A citation-based method for searching scientific literature

Jason M Brenchley, David A Price, Timothy W Schacker, Tedi E Asher, Guido Silvestri, Srinivas Rao, Zachary Kazzaz, Ethan Bornstein, Olivier Lambotte, Daniel Altmann, Bruce R Blazar, Benigno Rodriguez, Leia Teixeira-Johnson, Alan Landay, Jeffrey N Martin, Frederick M Hecht, Louis J Picker, Michael M Lederman, Steven G Deeks, Daniel C Douek. Nat Med 2006
Times Cited: 2494

List of co-cited articles
833 articles co-cited >1

Times Cited
  Times     Co-cited

Plasma levels of soluble CD14 independently predict mortality in HIV infection.
Netanya G Sandler, Handan Wand, Annelys Roque, Matthew Law, Martha C Nason, Daniel E Nixon, Court Pedersen, Kiat Ruxrungtham, Sharon R Lewin, Sean Emery,[...]. J Infect Dis 2011

Microbial translocation in the pathogenesis of HIV infection and AIDS.
Giulia Marchetti, Camilla Tincati, Guido Silvestri. Clin Microbiol Rev 2013

Inflammatory and coagulation biomarkers and mortality in patients with HIV infection.
Lewis H Kuller, Russell Tracy, Waldo Belloso, Stephane De Wit, Fraser Drummond, H Clifford Lane, Bruno Ledergerber, Jens Lundgren, Jacqueline Neuhaus, Daniel Nixon,[...]. PLoS Med 2008

CD4+ T cell depletion during all stages of HIV disease occurs predominantly in the gastrointestinal tract.
Jason M Brenchley, Timothy W Schacker, Laura E Ruff, David A Price, Jodie H Taylor, Gregory J Beilman, Phuong L Nguyen, Alexander Khoruts, Matthew Larson, Ashley T Haase,[...]. J Exp Med 2004

Damaged intestinal epithelial integrity linked to microbial translocation in pathogenic simian immunodeficiency virus infections.
Jacob D Estes, Levelle D Harris, Nichole R Klatt, Brian Tabb, Stefania Pittaluga, Mirko Paiardini, G Robin Barclay, Jeremy Smedley, Rhonda Pung, Kenneth M Oliveira,[...]. PLoS Pathog 2010

Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.
Ivan Vujkovic-Cvijin, Richard M Dunham, Shoko Iwai, Michael C Maher, Rebecca G Albright, Mara J Broadhurst, Ryan D Hernandez, Michael M Lederman, Yong Huang, Ma Somsouk,[...]. Sci Transl Med 2013

A compositional look at the human gastrointestinal microbiome and immune activation parameters in HIV infected subjects.
Ece A Mutlu, Ali Keshavarzian, John Losurdo, Garth Swanson, Basile Siewe, Christopher Forsyth, Audrey French, Patricia Demarais, Yan Sun, Lars Koenig,[...]. PLoS Pathog 2014

HIV reservoir size and persistence are driven by T cell survival and homeostatic proliferation.
Nicolas Chomont, Mohamed El-Far, Petronela Ancuta, Lydie Trautmann, Francesco A Procopio, Bader Yassine-Diab, Geneviève Boucher, Mohamed-Rachid Boulassel, Georges Ghattas, Jason M Brenchley,[...]. Nat Med 2009

Immunologic failure despite suppressive antiretroviral therapy is related to activation and turnover of memory CD4 cells.
Michael M Lederman, Leonard Calabrese, Nicholas T Funderburg, Brian Clagett, Kathy Medvik, Hector Bonilla, Barbara Gripshover, Robert A Salata, Alan Taege, Michelle Lisgaris,[...]. J Infect Dis 2011

Gut epithelial barrier dysfunction and innate immune activation predict mortality in treated HIV infection.
Peter W Hunt, Elizabeth Sinclair, Benigno Rodriguez, Carey Shive, Brian Clagett, Nicholas Funderburg, Janet Robinson, Yong Huang, Lorrie Epling, Jeffrey N Martin,[...]. J Infect Dis 2014

An altered intestinal mucosal microbiome in HIV-1 infection is associated with mucosal and systemic immune activation and endotoxemia.
S M Dillon, E J Lee, C V Kotter, G L Austin, Z Dong, D K Hecht, S Gianella, B Siewe, D M Smith, A L Landay,[...]. Mucosal Immunol 2014

Intestinal microbiota, microbial translocation, and systemic inflammation in chronic HIV infection.
Duy M Dinh, Gretchen E Volpe, Chad Duffalo, Seema Bhalchandra, Albert K Tai, Anne V Kane, Christine A Wanke, Honorine D Ward. J Infect Dis 2015

Primary HIV-1 infection is associated with preferential depletion of CD4+ T lymphocytes from effector sites in the gastrointestinal tract.
Saurabh Mehandru, Michael A Poles, Klara Tenner-Racz, Amir Horowitz, Arlene Hurley, Christine Hogan, Daniel Boden, Paul Racz, Martin Markowitz. J Exp Med 2004

Systemic effects of inflammation on health during chronic HIV infection.
Steven G Deeks, Russell Tracy, Daniel C Douek. Immunity 2013

Circulating (1→3)-β-D-glucan Is Associated With Immune Activation During Human Immunodeficiency Virus Infection.
Vikram Mehraj, Rayoun Ramendra, Stéphane Isnard, Franck P Dupuy, Rosalie Ponte, Jun Chen, Ido Kema, Mohammad-Ali Jenabian, Cecilia T Costinuik, Bertrand Lebouché,[...]. Clin Infect Dis 2020

HIV-associated gut dysbiosis is independent of sexual practice and correlates with noncommunicable diseases.
I Vujkovic-Cvijin, O Sortino, E Verheij, J Sklar, F W Wit, N A Kootstra, B Sellers, J M Brenchley, J Ananworanich, M Schim van der Loeff,[...]. Nat Commun 2020

Microbial translocation across the GI tract.
Jason M Brenchley, Daniel C Douek. Annu Rev Immunol 2012

Differential Th17 CD4 T-cell depletion in pathogenic and nonpathogenic lentiviral infections.
Jason M Brenchley, Mirko Paiardini, Kenneth S Knox, Ava I Asher, Barbara Cervasi, Tedi E Asher, Phillip Scheinberg, David A Price, Chadi A Hage, Lisa M Kholi,[...]. Blood 2008

Altered Virome and Bacterial Microbiome in Human Immunodeficiency Virus-Associated Acquired Immunodeficiency Syndrome.
Cynthia L Monaco, David B Gootenberg, Guoyan Zhao, Scott A Handley, Musie S Ghebremichael, Efrem S Lim, Alex Lankowski, Megan T Baldridge, Craig B Wilen, Meaghan Flagg,[...]. Cell Host Microbe 2016

Gut epithelial barrier and systemic inflammation during chronic HIV infection.
Ma Somsouk, Jacob D Estes, Claire Deleage, Richard M Dunham, Rebecca Albright, John M Inadomi, Jeffrey N Martin, Steven G Deeks, Joseph M McCune, Peter W Hunt. AIDS 2015

Cell death by pyroptosis drives CD4 T-cell depletion in HIV-1 infection.
Gilad Doitsh, Nicole L K Galloway, Xin Geng, Zhiyuan Yang, Kathryn M Monroe, Orlando Zepeda, Peter W Hunt, Hiroyu Hatano, Stefanie Sowinski, Isa Muñoz-Arias,[...]. Nature 2014

Microbial translocation, immune activation, and HIV disease.
Nichole R Klatt, Nicholas T Funderburg, Jason M Brenchley. Trends Microbiol 2013

HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.
Sergio Serrano-Villar, Talia Sainz, Sulggi A Lee, Peter W Hunt, Elizabeth Sinclair, Barbara L Shacklett, April L Ferre, Timothy L Hayes, Ma Somsouk, Priscilla Y Hsue,[...]. PLoS Pathog 2014

Global Burden of Atherosclerotic Cardiovascular Disease in People Living With HIV: Systematic Review and Meta-Analysis.
Anoop S V Shah, Dominik Stelzle, Kuan Ken Lee, Eduard J Beck, Shirjel Alam, Sarah Clifford, Chris T Longenecker, Fiona Strachan, Shashwatee Bagchi, William Whiteley,[...]. Circulation 2018

Microbial translocation and microbiome dysbiosis in HIV-associated immune activation.
Alexander S Zevin, Lyle McKinnon, Adam Burgener, Nichole R Klatt. Curr Opin HIV AIDS 2016

Markers of inflammation, coagulation, and renal function are elevated in adults with HIV infection.
Jacqueline Neuhaus, David R Jacobs, Jason V Baker, Alexandra Calmy, Daniel Duprez, Alberto La Rosa, Lewis H Kuller, Sarah L Pett, Matti Ristola, Michael J Ross,[...]. J Infect Dis 2010

Association Between Gut Microbiota and CD4 Recovery in HIV-1 Infected Patients.
Wei Lu, Yuqing Feng, Fanhui Jing, Yang Han, Na Lyu, Fei Liu, Jing Li, Xiaojing Song, Jing Xie, Zhifeng Qiu,[...]. Front Microbiol 2018

Gut Microbiota Linked to Sexual Preference and HIV Infection.
Marc Noguera-Julian, Muntsa Rocafort, Yolanda Guillén, Javier Rivera, Maria Casadellà, Piotr Nowak, Falk Hildebrand, Georg Zeller, Mariona Parera, Rocío Bellido,[...]. EBioMedicine 2016

Alterations in the gut microbiota associated with HIV-1 infection.
Catherine A Lozupone, Marcella Li, Thomas B Campbell, Sonia C Flores, Derek Linderman, Matthew J Gebert, Rob Knight, Andrew P Fontenot, Brent E Palmer. Cell Host Microbe 2013

Persistent, Albeit Reduced, Chronic Inflammation in Persons Starting Antiretroviral Therapy in Acute HIV Infection.
Irini Sereti, Shelly J Krebs, Nittaya Phanuphak, James L Fletcher, Bonnie Slike, Suteeraporn Pinyakorn, Robert J O'Connell, Adam Rupert, Nicolas Chomont, Victor Valcour,[...]. Clin Infect Dis 2017

Plasma levels of bacterial DNA correlate with immune activation and the magnitude of immune restoration in persons with antiretroviral-treated HIV infection.
Wei Jiang, Michael M Lederman, Peter Hunt, Scott F Sieg, Kathryn Haley, Benigno Rodriguez, Alan Landay, Jeffrey Martin, Elizabeth Sinclair, Ava I Asher,[...]. J Infect Dis 2009

Translocated microbiome composition determines immunological outcome in treated HIV infection.
Krystelle Nganou-Makamdop, Aarthi Talla, Ashish Arunkumar Sharma, Sam Darko, Amy Ransier, Farida Laboune, Jeffrey G Chipman, Gregory J Beilman, Torfi Hoskuldsson, Slim Fourati,[...]. Cell 2021

Massive infection and loss of memory CD4+ T cells in multiple tissues during acute SIV infection.
Joseph J Mattapallil, Daniel C Douek, Brenna Hill, Yoshiaki Nishimura, Malcolm Martin, Mario Roederer. Nature 2005

Microbial translocation is associated with increased monocyte activation and dementia in AIDS patients.
Petronela Ancuta, Anupa Kamat, Kevin J Kunstman, Eun-Young Kim, Patrick Autissier, Alysse Wurcel, Tauheed Zaman, David Stone, Megan Mefford, Susan Morgello,[...]. PLoS One 2008

Cytomegalovirus Seropositivity Is Associated With Increased Microbial Translocation in People Living With Human Immunodeficiency Virus and Uninfected Controls.
Rayoun Ramendra, Stéphane Isnard, John Lin, Brandon Fombuena, Jing Ouyang, Vikram Mehraj, Yonglong Zhang, Malcolm Finkelman, Cecilia Costiniuk, Bertrand Lebouché,[...]. Clin Infect Dis 2020

HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.
Ivan Vujkovic-Cvijin, Ma Somsouk. Curr HIV/AIDS Rep 2019

Soluble markers of inflammation and coagulation but not T-cell activation predict non-AIDS-defining morbid events during suppressive antiretroviral treatment.
Allan R Tenorio, Yu Zheng, Ronald J Bosch, Supriya Krishnan, Benigno Rodriguez, Peter W Hunt, Jill Plants, Arjun Seth, Cara C Wilson, Steven G Deeks,[...]. J Infect Dis 2014

Altered metabolism of gut microbiota contributes to chronic immune activation in HIV-infected individuals.
J F Vázquez-Castellanos, S Serrano-Villar, A Latorre, A Artacho, M L Ferrús, N Madrid, A Vallejo, T Sainz, J Martínez-Botas, S Ferrando-Martínez,[...]. Mucosal Immunol 2015

Human immunodeficiency virus (HIV)-1 infects human hepatic stellate cells and promotes collagen I and monocyte chemoattractant protein-1 expression: implications for the pathogenesis of HIV/hepatitis C virus-induced liver fibrosis.
Ana C Tuyama, Feng Hong, Yedidya Saiman, Chuansheng Wang, Derya Ozkok, Arevik Mosoian, Ping Chen, Benjamin K Chen, Mary E Klotman, Meena B Bansal. Hepatology 2010

Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.
Ekaterina Maidji, Ma Somsouk, Jose M Rivera, Peter W Hunt, Cheryl A Stoddart. PLoS Pathog 2017

Defining total-body AIDS-virus burden with implications for curative strategies.
Jacob D Estes, Cissy Kityo, Francis Ssali, Louise Swainson, Krystelle Nganou Makamdop, Gregory Q Del Prete, Steven G Deeks, Paul A Luciw, Jeffrey G Chipman, Gregory J Beilman,[...]. Nat Med 2017

Dysbiotic bacteria translocate in progressive SIV infection.
Z Klase, A Ortiz, C Deleage, J C Mudd, M Quiñones, E Schwartzman, N R Klatt, L Canary, J D Estes, J M Brenchley. Mucosal Immunol 2015

HIV Infection is associated with compositional and functional shifts in the rectal mucosal microbiota.
Ian H McHardy, Xiaoxiao Li, Maomeng Tong, Paul Ruegger, Jonathan Jacobs, James Borneman, Peter Anton, Jonathan Braun. Microbiome 2013

Probiotic/prebiotic supplementation of antiretrovirals improves gastrointestinal immunity in SIV-infected macaques.
Nichole R Klatt, Lauren A Canary, Xiaoyong Sun, Carol L Vinton, Nicholas T Funderburg, David R Morcock, Mariam Quiñones, Clayton B Deming, Molly Perkins, Daria J Hazuda,[...]. J Clin Invest 2013

Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.