A citation-based method for searching scientific literature

Daniel J Fitzgerald, Philipp Berger, Christiane Schaffitzel, Kazuhiro Yamada, Timothy J Richmond, Imre Berger. Nat Methods 2006
Times Cited: 240







List of co-cited articles
470 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Baculovirus expression system for heterologous multiprotein complexes.
Imre Berger, Daniel J Fitzgerald, Timothy J Richmond. Nat Biotechnol 2004
309
34

Features and development of Coot.
P Emsley, B Lohkamp, W G Scott, K Cowtan. Acta Crystallogr D Biol Crystallogr 2010
27

MultiBac: expanding the research toolbox for multiprotein complexes.
Christoph Bieniossek, Tsuyoshi Imasaki, Yuichiro Takagi, Imre Berger. Trends Biochem Sci 2012
147
19

PHENIX: a comprehensive Python-based system for macromolecular structure solution.
Paul D Adams, Pavel V Afonine, Gábor Bunkóczi, Vincent B Chen, Ian W Davis, Nathaniel Echols, Jeffrey J Headd, Li-Wei Hung, Gary J Kapral, Ralf W Grosse-Kunstleve,[...]. Acta Crystallogr D Biol Crystallogr 2010
16

UCSF Chimera--a visualization system for exploratory research and analysis.
Eric F Pettersen, Thomas D Goddard, Conrad C Huang, Gregory S Couch, Daniel M Greenblatt, Elaine C Meng, Thomas E Ferrin. J Comput Chem 2004
16

New baculovirus expression tools for recombinant protein complex production.
Simon Trowitzsch, Christoph Bieniossek, Yan Nie, Frederic Garzoni, Imre Berger. J Struct Biol 2010
132
14

XDS.
Wolfgang Kabsch. Acta Crystallogr D Biol Crystallogr 2010
13

MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy.
Shawn Q Zheng, Eugene Palovcak, Jean-Paul Armache, Kliment A Verba, Yifan Cheng, David A Agard. Nat Methods 2017
12

Phaser crystallographic software.
Airlie J McCoy, Ralf W Grosse-Kunstleve, Paul D Adams, Martyn D Winn, Laurent C Storoni, Randy J Read. J Appl Crystallogr 2007
12



The MultiBac Baculovirus/Insect Cell Expression Vector System for Producing Complex Protein Biologics.
Duygu Sari, Kapil Gupta, Deepak Balaji Thimiri Govinda Raj, Alice Aubert, Petra Drncová, Frederic Garzoni, Daniel Fitzgerald, Imre Berger. Adv Exp Med Biol 2016
39
25

Enzymatic assembly of DNA molecules up to several hundred kilobases.
Daniel G Gibson, Lei Young, Ray-Yuan Chuang, J Craig Venter, Clyde A Hutchison, Hamilton O Smith. Nat Methods 2009
10

Highly efficient baculovirus-mediated multigene delivery in primary cells.
Maysam Mansouri, Itxaso Bellon-Echeverria, Aurélien Rizk, Zahra Ehsaei, Chiara Cianciolo Cosentino, Catarina S Silva, Ye Xie, Frederick M Boyce, M Wayne Davis, Stephan C F Neuhauss,[...]. Nat Commun 2016
68
14

MultiBac: multigene baculovirus-based eukaryotic protein complex production.
Christoph Bieniossek, Timothy J Richmond, Imre Berger. Curr Protoc Protein Sci 2008
106
10

Multiprotein expression strategy for structural biology of eukaryotic complexes.
Daniel J Fitzgerald, Christiane Schaffitzel, Philipp Berger, Ralf Wellinger, Christoph Bieniossek, Timothy J Richmond, Imre Berger. Structure 2007
44
22


MolProbity: all-atom structure validation for macromolecular crystallography.
Vincent B Chen, W Bryan Arendall, Jeffrey J Headd, Daniel A Keedy, Robert M Immormino, Gary J Kapral, Laura W Murray, Jane S Richardson, David C Richardson. Acta Crystallogr D Biol Crystallogr 2010
10

Robots, pipelines, polyproteins: enabling multiprotein expression in prokaryotic and eukaryotic cells.
Lakshmi Sumitra Vijayachandran, Cristina Viola, Frederic Garzoni, Simon Trowitzsch, Christoph Bieniossek, Maxime Chaillet, Christiane Schaffitzel, Didier Busso, Christophe Romier, Arnaud Poterszman,[...]. J Struct Biol 2011
69
13

Overview of the CCP4 suite and current developments.
Martyn D Winn, Charles C Ballard, Kevin D Cowtan, Eleanor J Dodson, Paul Emsley, Phil R Evans, Ronan M Keegan, Eugene B Krissinel, Andrew G W Leslie, Airlie McCoy,[...]. Acta Crystallogr D Biol Crystallogr 2011
9

MultiBac: from protein complex structures to synthetic viral nanosystems.
Martin Pelosse, Hannah Crocker, Barbara Gorda, Paul Lemaire, Jens Rauch, Imre Berger. BMC Biol 2017
16
56

Genetic code expansion for multiprotein complex engineering.
Christine Koehler, Paul F Sauter, Mirella Wawryszyn, Gemma Estrada Girona, Kapil Gupta, Jonathan J M Landry, Markus Hsi-Yang Fritz, Ksenija Radic, Jan-Erik Hoffmann, Zhuo A Chen,[...]. Nat Methods 2016
42
19


Baculovirus as versatile vectors for protein expression in insect and mammalian cells.
Thomas A Kost, J Patrick Condreay, Donald L Jarvis. Nat Biotechnol 2005
660
8


biGBac enables rapid gene assembly for the expression of large multisubunit protein complexes.
Florian Weissmann, Georg Petzold, Ryan VanderLinden, Pim J Huis In 't Veld, Nicholas G Brown, Fabienne Lampert, Stefan Westermann, Holger Stark, Brenda A Schulman, Jan-Michael Peters. Proc Natl Acad Sci U S A 2016
115
8

SweetBac: a new approach for the production of mammalianised glycoproteins in insect cells.
Dieter Palmberger, Iain B H Wilson, Imre Berger, Reingard Grabherr, Dubravko Rendic. PLoS One 2012
57
14

MultiBac turns sweet.
Dieter Palmberger, Miriam Klausberger, Imre Berger, Reingard Grabherr. Bioengineered 2013
26
30

New tools for automated high-resolution cryo-EM structure determination in RELION-3.
Jasenko Zivanov, Takanori Nakane, Björn O Forsberg, Dari Kimanius, Wim Jh Hagen, Erik Lindahl, Sjors Hw Scheres. Elife 2018
8

CTFFIND4: Fast and accurate defocus estimation from electron micrographs.
Alexis Rohou, Nikolaus Grigorieff. J Struct Biol 2015
7

cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination.
Ali Punjani, John L Rubinstein, David J Fleet, Marcus A Brubaker. Nat Methods 2017
7

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega.
Fabian Sievers, Andreas Wilm, David Dineen, Toby J Gibson, Kevin Karplus, Weizhong Li, Rodrigo Lopez, Hamish McWilliam, Michael Remmert, Johannes Söding,[...]. Mol Syst Biol 2011
6


The architecture of human general transcription factor TFIID core complex.
Christoph Bieniossek, Gabor Papai, Christiane Schaffitzel, Frederic Garzoni, Maxime Chaillet, Elisabeth Scheer, Petros Papadopoulos, Laszlo Tora, Patrick Schultz, Imre Berger. Nature 2013
110
6


Coot: model-building tools for molecular graphics.
Paul Emsley, Kevin Cowtan. Acta Crystallogr D Biol Crystallogr 2004
6

How good are my data and what is the resolution?
Philip R Evans, Garib N Murshudov. Acta Crystallogr D Biol Crystallogr 2013
6

ACEMBL Tool-Kits for High-Throughput Multigene Delivery and Expression in Prokaryotic and Eukaryotic Hosts.
Yan Nie, Maxime Chaillet, Christian Becke, Matthias Haffke, Martin Pelosse, Daniel Fitzgerald, Ian Collinson, Christiane Schaffitzel, Imre Berger. Adv Exp Med Biol 2016
10
60

The Phyre2 web portal for protein modeling, prediction and analysis.
Lawrence A Kelley, Stefans Mezulis, Christopher M Yates, Mark N Wass, Michael J E Sternberg. Nat Protoc 2015
6

MultiBac complexomics.
Simon Trowitzsch, Dieter Palmberger, Daniel Fitzgerald, Yuichiro Takagi, Imre Berger. Expert Rev Proteomics 2012
15
40

MultiBac: Baculovirus-Mediated Multigene DNA Cargo Delivery in Insect and Mammalian Cells.
Kapil Gupta, Christine Tölzer, Duygu Sari-Ak, Daniel J Fitzgerald, Christiane Schaffitzel, Imre Berger. Viruses 2019
17
35

REFMAC5 for the refinement of macromolecular crystal structures.
Garib N Murshudov, Pavol Skubák, Andrey A Lebedev, Navraj S Pannu, Roberto A Steiner, Robert A Nicholls, Martyn D Winn, Fei Long, Alexei A Vagin. Acta Crystallogr D Biol Crystallogr 2011
5

Genome engineering using the CRISPR-Cas9 system.
F Ann Ran, Patrick D Hsu, Jason Wright, Vineeta Agarwala, David A Scott, Feng Zhang. Nat Protoc 2013
5


Quantifying the local resolution of cryo-EM density maps.
Alp Kucukelbir, Fred J Sigworth, Hemant D Tagare. Nat Methods 2014
5


Baculovirus-mediated gene transfer into mammalian cells.
F M Boyce, N L Bucher. Proc Natl Acad Sci U S A 1996
354
5

The multiBac protein complex production platform at the EMBL.
Imre Berger, Frederic Garzoni, Maxime Chaillet, Matthias Haffke, Kapil Gupta, Alice Aubert. J Vis Exp 2013
20
25

The titerless infected-cells preservation and scale-up (TIPS) method for large-scale production of NO-sensitive human soluble guanylate cyclase (sGC) from insect cells infected with recombinant baculovirus.
David J Wasilko, S Edward Lee, Kim J Stutzman-Engwall, Beverly A Reitz, Thomas L Emmons, Karl J Mathis, Michael J Bienkowski, Alfredo G Tomasselli, H David Fischer. Protein Expr Purif 2009
75
6

Towards automated crystallographic structure refinement with phenix.refine.
Pavel V Afonine, Ralf W Grosse-Kunstleve, Nathaniel Echols, Jeffrey J Headd, Nigel W Moriarty, Marat Mustyakimov, Thomas C Terwilliger, Alexandre Urzhumtsev, Peter H Zwart, Paul D Adams. Acta Crystallogr D Biol Crystallogr 2012
5


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.