A citation-based method for searching scientific literature

Jochen Hampe, Andre Franke, Philip Rosenstiel, Andreas Till, Markus Teuber, Klaus Huse, Mario Albrecht, Gabriele Mayr, Francisco M De La Vega, Jason Briggs, Simone Günther, Natalie J Prescott, Clive M Onnie, Robert Häsler, Bence Sipos, Ulrich R Fölsch, Thomas Lengauer, Matthias Platzer, Christopher G Mathew, Michael Krawczak, Stefan Schreiber. Nat Genet 2007
Times Cited: 1390







List of co-cited articles
1091 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Genome-wide association study identifies new susceptibility loci for Crohn disease and implicates autophagy in disease pathogenesis.
John D Rioux, Ramnik J Xavier, Kent D Taylor, Mark S Silverberg, Philippe Goyette, Alan Huett, Todd Green, Petric Kuballa, M Michael Barmada, Lisa Wu Datta,[...]. Nat Genet 2007
40

Loss of the autophagy protein Atg16L1 enhances endotoxin-induced IL-1beta production.
Tatsuya Saitoh, Naonobu Fujita, Myoung Ho Jang, Satoshi Uematsu, Bo-Gie Yang, Takashi Satoh, Hiroko Omori, Takeshi Noda, Naoki Yamamoto, Masaaki Komatsu,[...]. Nature 2008
29

A key role for autophagy and the autophagy gene Atg16l1 in mouse and human intestinal Paneth cells.
Ken Cadwell, John Y Liu, Sarah L Brown, Hiroyuki Miyoshi, Joy Loh, Jochen K Lennerz, Chieko Kishi, Wumesh Kc, Javier A Carrero, Steven Hunt,[...]. Nature 2008
27

A Crohn's disease variant in Atg16l1 enhances its degradation by caspase 3.
Aditya Murthy, Yun Li, Ivan Peng, Mike Reichelt, Anand Kumar Katakam, Rajkumar Noubade, Merone Roose-Girma, Jason DeVoss, Lauri Diehl, Robert R Graham,[...]. Nature 2014
253
24

Association of NOD2 leucine-rich repeat variants with susceptibility to Crohn's disease.
J P Hugot, M Chamaillard, H Zouali, S Lesage, J P Cézard, J Belaiche, S Almer, C Tysk, C A O'Morain, M Gassull,[...]. Nature 2001
23

Atg16L1 T300A variant decreases selective autophagy resulting in altered cytokine signaling and decreased antibacterial defense.
Kara G Lassen, Petric Kuballa, Kara L Conway, Khushbu K Patel, Christine E Becker, Joanna M Peloquin, Eduardo J Villablanca, Jason M Norman, Ta-Chiang Liu, Robert J Heath,[...]. Proc Natl Acad Sci U S A 2014
223
21

Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.
Luke Jostins, Stephan Ripke, Rinse K Weersma, Richard H Duerr, Dermot P McGovern, Ken Y Hui, James C Lee, L Philip Schumm, Yashoda Sharma, Carl A Anderson,[...]. Nature 2012
18

Sequence variants in the autophagy gene IRGM and multiple other replicating loci contribute to Crohn's disease susceptibility.
Miles Parkes, Jeffrey C Barrett, Natalie J Prescott, Mark Tremelling, Carl A Anderson, Sheila A Fisher, Roland G Roberts, Elaine R Nimmo, Fraser R Cummings, Dianne Soars,[...]. Nat Genet 2007
886
17

A frameshift mutation in NOD2 associated with susceptibility to Crohn's disease.
Y Ogura, D K Bonen, N Inohara, D L Nicolae, F F Chen, R Ramos, H Britton, T Moran, R Karaliuskas, R H Duerr,[...]. Nature 2001
16

XBP1 links ER stress to intestinal inflammation and confers genetic risk for human inflammatory bowel disease.
Arthur Kaser, Ann-Hwee Lee, Andre Franke, Jonathan N Glickman, Sebastian Zeissig, Herbert Tilg, Edward E S Nieuwenhuis, Darren E Higgins, Stefan Schreiber, Laurie H Glimcher,[...]. Cell 2008
980
14

Paneth cells as a site of origin for intestinal inflammation.
Timon E Adolph, Michal F Tomczak, Lukas Niederreiter, Hyun-Jeong Ko, Janne Böck, Eduardo Martinez-Naves, Jonathan N Glickman, Markus Tschurtschenthaler, John Hartwig, Shuhei Hosomi,[...]. Nature 2013
447
13

Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases.
Daniel N Frank, Allison L St Amand, Robert A Feldman, Edgar C Boedeker, Noam Harpaz, Norman R Pace. Proc Natl Acad Sci U S A 2007
13

Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.
Jimmy Z Liu, Suzanne van Sommeren, Hailiang Huang, Siew C Ng, Rudi Alberts, Atsushi Takahashi, Stephan Ripke, James C Lee, Luke Jostins, Tejas Shah,[...]. Nat Genet 2015
12

Nod1 and Nod2 direct autophagy by recruiting ATG16L1 to the plasma membrane at the site of bacterial entry.
Leonardo H Travassos, Leticia A M Carneiro, Mahendrasingh Ramjeet, Seamus Hussey, Yun-Gi Kim, João G Magalhães, Linda Yuan, Fraser Soares, Evelyn Chea, Lionel Le Bourhis,[...]. Nat Immunol 2010
923
11

The Crohn's disease polymorphism, ATG16L1 T300A, alters the gut microbiota and enhances the local Th1/Th17 response.
Sydney Lavoie, Kara L Conway, Kara G Lassen, Humberto B Jijon, Hui Pan, Eunyoung Chun, Monia Michaud, Jessica K Lang, Carey Ann Gallini Comeau, Jonathan M Dreyfuss,[...]. Elife 2019
45
24

NOD2 stimulation induces autophagy in dendritic cells influencing bacterial handling and antigen presentation.
Rachel Cooney, John Baker, Oliver Brain, Benedicte Danis, Tica Pichulik, Philip Allan, David J P Ferguson, Barry J Campbell, Derek Jewell, Alison Simmons. Nat Med 2010
745
11

Genetic variants synthesize to produce paneth cell phenotypes that define subtypes of Crohn's disease.
Kelli L VanDussen, Ta-Chiang Liu, Dalin Li, Fadi Towfic, Nir Modiano, Rachel Winter, Talin Haritunians, Kent D Taylor, Deepti Dhall, Stephan R Targan,[...]. Gastroenterology 2014
110
10

Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.
Jeffrey C Barrett, Sarah Hansoul, Dan L Nicolae, Judy H Cho, Richard H Duerr, John D Rioux, Steven R Brant, Mark S Silverberg, Kent D Taylor, M Michael Barmada,[...]. Nat Genet 2008
10

Genetic variation in the autophagy gene ULK1 and risk of Crohn's disease.
Liesbet Henckaerts, Isabelle Cleynen, Marko Brinar, Jestinah Mahachie John, Kristel Van Steen, Paul Rutgeerts, Séverine Vermeire. Inflamm Bowel Dis 2011
108
10

Mechanism and medical implications of mammalian autophagy.
Ivan Dikic, Zvulun Elazar. Nat Rev Mol Cell Biol 2018
10

High prevalence of adherent-invasive Escherichia coli associated with ileal mucosa in Crohn's disease.
Arlette Darfeuille-Michaud, Jérôme Boudeau, Philippe Bulois, Christel Neut, Anne-Lise Glasser, Nicolas Barnich, Marie-Agnès Bringer, Alexander Swidsinski, Laurent Beaugerie, Jean-Frédéric Colombel. Gastroenterology 2004
10

Autophagy in the pathogenesis of disease.
Beth Levine, Guido Kroemer. Cell 2008
9

Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.
Katrina M de Lange, Loukas Moutsianas, James C Lee, Christopher A Lamb, Yang Luo, Nicholas A Kennedy, Luke Jostins, Daniel L Rice, Javier Gutierrez-Achury, Sun-Gou Ji,[...]. Nat Genet 2017
464
9

Virus-plus-susceptibility gene interaction determines Crohn's disease gene Atg16L1 phenotypes in intestine.
Ken Cadwell, Khushbu K Patel, Nicole S Maloney, Ta-Chiang Liu, Aylwin C Y Ng, Chad E Storer, Richard D Head, Ramnik Xavier, Thaddeus S Stappenbeck, Herbert W Virgin. Cell 2010
637
9

NOD2 (CARD15) mutations in Crohn's disease are associated with diminished mucosal alpha-defensin expression.
J Wehkamp, J Harder, M Weichenthal, M Schwab, E Schäffeler, M Schlee, K R Herrlinger, A Stallmach, F Noack, P Fritz,[...]. Gut 2004
588
9

Paneth cells secrete lysozyme via secretory autophagy during bacterial infection of the intestine.
Shai Bel, Mihir Pendse, Yuhao Wang, Yun Li, Kelly A Ruhn, Brian Hassell, Tess Leal, Sebastian E Winter, Ramnik J Xavier, Lora V Hooper. Science 2017
163
9

Autophagy Protects against Colitis by the Maintenance of Normal Gut Microflora and Secretion of Mucus.
Koichiro Tsuboi, Mayo Nishitani, Atsushi Takakura, Yasuyuki Imai, Masaaki Komatsu, Hiroto Kawashima. J Biol Chem 2015
46
19


The global burden of IBD: from 2015 to 2025.
Gilaad G Kaplan. Nat Rev Gastroenterol Hepatol 2015
978
8


Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients.
Harry Sokol, Bénédicte Pigneur, Laurie Watterlot, Omar Lakhdari, Luis G Bermúdez-Humarán, Jean-Jacques Gratadoux, Sébastien Blugeon, Chantal Bridonneau, Jean-Pierre Furet, Gérard Corthier,[...]. Proc Natl Acad Sci U S A 2008
8

Deletion polymorphism upstream of IRGM associated with altered IRGM expression and Crohn's disease.
Steven A McCarroll, Alan Huett, Petric Kuballa, Shannon D Chilewski, Aimee Landry, Philippe Goyette, Michael C Zody, Jennifer L Hall, Steven R Brant, Judy H Cho,[...]. Nat Genet 2008
494
8

A genome-wide association study identifies IL23R as an inflammatory bowel disease gene.
Richard H Duerr, Kent D Taylor, Steven R Brant, John D Rioux, Mark S Silverberg, Mark J Daly, A Hillary Steinhart, Clara Abraham, Miguel Regueiro, Anne Griffiths,[...]. Science 2006
8

Impaired autophagy of an intracellular pathogen induced by a Crohn's disease associated ATG16L1 variant.
Petric Kuballa, Alan Huett, John D Rioux, Mark J Daly, Ramnik J Xavier. PLoS One 2008
253
8

Autophagy protein ATG16L1 prevents necroptosis in the intestinal epithelium.
Yu Matsuzawa-Ishimoto, Yusuke Shono, Luis E Gomez, Vanessa M Hubbard-Lucey, Michael Cammer, Jessica Neil, M Zahidunnabi Dewan, Sophia R Lieberman, Amina Lazrak, Jill M Marinis,[...]. J Exp Med 2017
142
8


Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.
Andre Franke, Dermot P B McGovern, Jeffrey C Barrett, Kai Wang, Graham L Radford-Smith, Tariq Ahmad, Charlie W Lees, Tobias Balschun, James Lee, Rebecca Roberts,[...]. Nat Genet 2010
7

Selective autophagy of the adaptor TRIF regulates innate inflammatory signaling.
Mohammad Samie, Junghyun Lim, Erik Verschueren, Joshua M Baughman, Ivan Peng, Aaron Wong, Youngsu Kwon, Yasin Senbabaoglu, Jason A Hackney, Mary Keir,[...]. Nat Immunol 2018
70
10

Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases.
Jason Lloyd-Price, Cesar Arze, Ashwin N Ananthakrishnan, Melanie Schirmer, Julian Avila-Pacheco, Tiffany W Poon, Elizabeth Andrews, Nadim J Ajami, Kevin S Bonham, Colin J Brislawn,[...]. Nature 2019
775
7

Atg16l1 is required for autophagy in intestinal epithelial cells and protection of mice from Salmonella infection.
Kara L Conway, Petric Kuballa, Joo-Hye Song, Khushbu K Patel, Adam B Castoreno, Omer H Yilmaz, Humberto B Jijon, Mei Zhang, Leslie N Aldrich, Eduardo J Villablanca,[...]. Gastroenterology 2013
163
7

Genetics and pathogenesis of inflammatory bowel disease.
Bernard Khor, Agnès Gardet, Ramnik J Xavier. Nature 2011
7

Inherited determinants of Crohn's disease and ulcerative colitis phenotypes: a genetic association study.
Isabelle Cleynen, Gabrielle Boucher, Luke Jostins, L Philip Schumm, Sebastian Zeissig, Tariq Ahmad, Vibeke Andersen, Jane M Andrews, Vito Annese, Stephan Brand,[...]. Lancet 2016
409
7

Reduced Paneth cell alpha-defensins in ileal Crohn's disease.
Jan Wehkamp, Nita H Salzman, Edith Porter, Sabine Nuding, Michael Weichenthal, Robert E Petras, Bo Shen, Elke Schaeffeler, Matthias Schwab, Rose Linzmeier,[...]. Proc Natl Acad Sci U S A 2005
704
7

Reduced diversity of faecal microbiota in Crohn's disease revealed by a metagenomic approach.
C Manichanh, L Rigottier-Gois, E Bonnaud, K Gloux, E Pelletier, L Frangeul, R Nalin, C Jarrin, P Chardon, P Marteau,[...]. Gut 2006
7


Presence of adherent Escherichia coli strains in ileal mucosa of patients with Crohn's disease.
A Darfeuille-Michaud, C Neut, N Barnich, E Lederman, P Di Martino, P Desreumaux, L Gambiez, B Joly, A Cortot, J F Colombel. Gastroenterology 1998
591
7

Autophagy: renovation of cells and tissues.
Noboru Mizushima, Masaaki Komatsu. Cell 2011
7

Autophagy: roles in intestinal mucosal homeostasis and inflammation.
Sabah Haq, Jensine Grondin, Suhrid Banskota, Waliul I Khan. J Biomed Sci 2019
57
12

The microbiome in inflammatory bowel disease: current status and the future ahead.
Aleksandar D Kostic, Ramnik J Xavier, Dirk Gevers. Gastroenterology 2014
950
7

Crohn's disease.
Joana Torres, Saurabh Mehandru, Jean-Frédéric Colombel, Laurent Peyrin-Biroulet. Lancet 2017
836
7


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.