A citation-based method for searching scientific literature

Feng Wu, Themistocles Dassopoulos, Leslie Cope, Anirban Maitra, Steven R Brant, Mary L Harris, Theodore M Bayless, Giovanni Parmigiani, Shukti Chakravarti. Inflamm Bowel Dis 2007
Times Cited: 186







List of co-cited articles
775 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Transcriptional analysis of the intestinal mucosa of patients with ulcerative colitis in remission reveals lasting epithelial cell alterations.
Núria Planell, Juan J Lozano, Rut Mora-Buch, M Carme Masamunt, Mireya Jimeno, Ingrid Ordás, Miriam Esteller, Elena Ricart, Josep M Piqué, Julián Panés,[...]. Gut 2013
128
24

Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.
Luke Jostins, Stephan Ripke, Rinse K Weersma, Richard H Duerr, Dermot P McGovern, Ken Y Hui, James C Lee, L Philip Schumm, Yashoda Sharma, Carl A Anderson,[...]. Nature 2012
17

Diagnosis of ulcerative colitis before onset of inflammation by multivariate modeling of genome-wide gene expression data.
Jørgen Olsen, Thomas A Gerds, Jakob B Seidelin, Claudio Csillag, Jacob T Bjerrum, Jesper T Troelsen, Ole Haagen Nielsen. Inflamm Bowel Dis 2009
72
22


MicroRNAs are differentially expressed in ulcerative colitis and alter expression of macrophage inflammatory peptide-2 alpha.
Feng Wu, Michelle Zikusoka, Anil Trindade, Themistocles Dassopoulos, Mary L Harris, Theodore M Bayless, Steven R Brant, Shukti Chakravarti, John H Kwon. Gastroenterology 2008
371
11

Ulcerative colitis.
Ingrid Ordás, Lars Eckmann, Mark Talamini, Daniel C Baumgart, William J Sandborn. Lancet 2012
819
10

Whole genome gene expression meta-analysis of inflammatory bowel disease colon mucosa demonstrates lack of major differences between Crohn's disease and ulcerative colitis.
Atle van Beelen Granlund, Arnar Flatberg, Ann E Østvik, Ignat Drozdov, Bjørn I Gustafsson, Mark Kidd, Vidar Beisvag, Sverre H Torp, Helge L Waldum, Tom Christian Martinsen,[...]. PLoS One 2013
80
12

Dissection of the inflammatory bowel disease transcriptome using genome-wide cDNA microarrays.
Christine M Costello, Nancy Mah, Robert Häsler, Philip Rosenstiel, Georg H Waetzig, Andreas Hahn, Tim Lu, Yesim Gurbuz, Susanna Nikolaus, Mario Albrecht,[...]. PLoS Med 2005
153
10

Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.
Andre Franke, Dermot P B McGovern, Jeffrey C Barrett, Kai Wang, Graham L Radford-Smith, Tariq Ahmad, Charlie W Lees, Tobias Balschun, James Lee, Rebecca Roberts,[...]. Nat Genet 2010
9


Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.
Aravind Subramanian, Pablo Tamayo, Vamsi K Mootha, Sayan Mukherjee, Benjamin L Ebert, Michael A Gillette, Amanda Paulovich, Scott L Pomeroy, Todd R Golub, Eric S Lander,[...]. Proc Natl Acad Sci U S A 2005
9

Regional variation in gene expression in the healthy colon is dysregulated in ulcerative colitis.
C L Noble, A R Abbas, J Cornelius, C W Lees, G-T Ho, K Toy, Z Modrusan, N Pal, F Zhong, S Chalasani,[...]. Gut 2008
120
9

Genetics and pathogenesis of inflammatory bowel disease.
Bernard Khor, Agnès Gardet, Ramnik J Xavier. Nature 2011
8

Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.
Carl A Anderson, Gabrielle Boucher, Charlie W Lees, Andre Franke, Mauro D'Amato, Kent D Taylor, James C Lee, Philippe Goyette, Marcin Imielinski, Anna Latiano,[...]. Nat Genet 2011
914
8

Analysis of mucosal gene expression in inflammatory bowel disease by parallel oligonucleotide arrays.
B K Dieckgraefe, W F Stenson, J R Korzenik, P E Swanson, C A Harrington. Physiol Genomics 2000
154
8

Gene expression profiling and response signatures associated with differential responses to infliximab treatment in ulcerative colitis.
Gary Toedter, Katherine Li, Colleen Marano, Keying Ma, Sarah Sague, C Chris Huang, Xiao-Yu Song, Paul Rutgeerts, Frédéric Baribaud. Am J Gastroenterol 2011
53
15

Molecular classification of Crohn's disease and ulcerative colitis patients using transcriptional profiles in peripheral blood mononuclear cells.
Michael E Burczynski, Ron L Peterson, Natalie C Twine, Krystyna A Zuberek, Brendan J Brodeur, Lori Casciotti, Vasu Maganti, Padma S Reddy, Andrew Strahs, Fred Immermann,[...]. J Mol Diagn 2006
112
8

Crohn's disease.
Daniel C Baumgart, William J Sandborn. Lancet 2012
7

Bioconductor: open software development for computational biology and bioinformatics.
Robert C Gentleman, Vincent J Carey, Douglas M Bates, Ben Bolstad, Marcel Dettling, Sandrine Dudoit, Byron Ellis, Laurent Gautier, Yongchao Ge, Jeff Gentry,[...]. Genome Biol 2004
7

Mucosal gene expression of antimicrobial peptides in inflammatory bowel disease before and after first infliximab treatment.
Ingrid Arijs, Gert De Hertogh, Katleen Lemaire, Roel Quintens, Leentje Van Lommel, Kristel Van Steen, Peter Leemans, Isabelle Cleynen, Gert Van Assche, Séverine Vermeire,[...]. PLoS One 2009
127
7

Identification of novel predictor classifiers for inflammatory bowel disease by gene expression profiling.
Trinidad Montero-Meléndez, Xavier Llor, Esther García-Planella, Mauro Perretti, Antonio Suárez. PLoS One 2013
37
18

Pediatric Crohn disease patients exhibit specific ileal transcriptome and microbiome signature.
Yael Haberman, Timothy L Tickle, Phillip J Dexheimer, Mi-Ok Kim, Dora Tang, Rebekah Karns, Robert N Baldassano, Joshua D Noe, Joel Rosh, James Markowitz,[...]. J Clin Invest 2014
277
7

Interferon-inducible gene family 1-8U expression in colitis-associated colon cancer and severely inflamed mucosa in ulcerative colitis.
T Hisamatsu, M Watanabe, H Ogata, T Ezaki, S Hozawa, H Ishii, T Kanai, T Hibi. Cancer Res 1999
46
15

Identification of the IFITM family as a new molecular marker in human colorectal tumors.
Pauline Andreu, Sabine Colnot, Cécile Godard, Pierre Laurent-Puig, Dominique Lamarque, Axel Kahn, Christine Perret, Béatrice Romagnolo. Cancer Res 2006
99
7

Activation pattern of signal transducers and activators of transcription (STAT) factors in inflammatory bowel diseases.
Jonas Mudter, Benno Weigmann, Brigitte Bartsch, Ralf Kiesslich, Dennis Strand, Peter R Galle, Hans A Lehr, Jan Schmidt, Markus F Neurath. Am J Gastroenterol 2005
165
7

Identification of microRNAs associated with ileal and colonic Crohn's disease.
Feng Wu, Simin Zhang, Themistocles Dassopoulos, Mary L Harris, Theodore M Bayless, Stephen J Meltzer, Steven R Brant, John H Kwon. Inflamm Bowel Dis 2010
197
6

Diagnostics of inflammatory bowel disease.
Susanna Nikolaus, Stefan Schreiber. Gastroenterology 2007
247
6

Peripheral blood microRNAs distinguish active ulcerative colitis and Crohn's disease.
Feng Wu, Natalie Jia Guo, Hongying Tian, Michael Marohn, Susan Gearhart, Theodore M Bayless, Steven R Brant, John H Kwon. Inflamm Bowel Dis 2011
148
6

Gene Expression Omnibus: NCBI gene expression and hybridization array data repository.
Ron Edgar, Michael Domrachev, Alex E Lash. Nucleic Acids Res 2002
6

Mucosal gene signatures to predict response to infliximab in patients with ulcerative colitis.
I Arijs, K Li, G Toedter, R Quintens, L Van Lommel, K Van Steen, P Leemans, G De Hertogh, K Lemaire, M Ferrante,[...]. Gut 2009
231
6

Increasing incidence and prevalence of the inflammatory bowel diseases with time, based on systematic review.
Natalie A Molodecky, Ing Shian Soon, Doreen M Rabi, William A Ghali, Mollie Ferris, Greg Chernoff, Eric I Benchimol, Remo Panaccione, Subrata Ghosh, Herman W Barkema,[...]. Gastroenterology 2012
6

Mucosal gene expression of cell adhesion molecules, chemokines, and chemokine receptors in patients with inflammatory bowel disease before and after infliximab treatment.
Ingrid Arijs, Gert De Hertogh, Kathleen Machiels, Kristel Van Steen, Katleen Lemaire, Anica Schraenen, Leentje Van Lommel, Roel Quintens, Gert Van Assche, Séverine Vermeire,[...]. Am J Gastroenterol 2011
104
6

Cytokines in inflammatory bowel disease.
Markus F Neurath. Nat Rev Immunol 2014
6

Blockade of interleukin 6 trans signaling suppresses T-cell resistance against apoptosis in chronic intestinal inflammation: evidence in crohn disease and experimental colitis in vivo.
R Atreya, J Mudter, S Finotto, J Müllberg, T Jostock, S Wirtz, M Schütz, B Bartsch, M Holtmann, C Becker,[...]. Nat Med 2000
956
6

Signal transducers and activators of transcription 3 signaling pathway: an essential mediator of inflammatory bowel disease and other forms of intestinal inflammation.
Alessandro Musso, Patrizia Dentelli, Alessandra Carlino, Luigi Chiusa, Alessandro Repici, Andreas Sturm, Claudio Fiocchi, Mario Rizzetto, Luigi Pegoraro, Carla Sategna-Guidetti,[...]. Inflamm Bowel Dis 2005
79
7

The small interferon-induced transmembrane genes and proteins.
Fredy Siegrist, Martin Ebeling, Ulrich Certa. J Interferon Cytokine Res 2011
108
6

KLF4-mediated negative regulation of IFITM3 expression plays a critical role in colon cancer pathogenesis.
Dawei Li, Zhihai Peng, Huamei Tang, Ping Wei, Xiangyu Kong, Dongwang Yan, Fei Huang, Qiang Li, Xiangdong Le, Qi Li,[...]. Clin Cancer Res 2011
69
8

The IFITM proteins mediate cellular resistance to influenza A H1N1 virus, West Nile virus, and dengue virus.
Abraham L Brass, I-Chueh Huang, Yair Benita, Sinu P John, Manoj N Krishnan, Eric M Feeley, Bethany J Ryan, Jessica L Weyer, Louise van der Weyden, Erol Fikrig,[...]. Cell 2009
826
6

Identification of the polymorphisms in IFITM3 gene and their association in a Korean population with ulcerative colitis.
Geom Seog Seo, Jeong Kun Lee, Ji In Yu, Ki Jung Yun, Soo Cheon Chae, Suck Chei Choi. Exp Mol Med 2010
20
30


Multigene analysis can discriminate between ulcerative colitis, Crohn's disease, and irritable bowel syndrome.
Petra von Stein, Robert Lofberg, Nikolai V Kuznetsov, Alexander W Gielen, Jan-Olov Persson, Rolf Sundberg, Karin Hellstrom, Anders Eriksson, Ragnar Befrits, Ake Ost,[...]. Gastroenterology 2008
51
9

Identification of restricted subsets of mature microRNA abnormally expressed in inactive colonic mucosa of patients with inflammatory bowel disease.
Magali Fasseu, Xavier Tréton, Cécile Guichard, Eric Pedruzzi, Dominique Cazals-Hatem, Christophe Richard, Thomas Aparicio, Fanny Daniel, Jean-Claude Soulé, Richard Moreau,[...]. PLoS One 2010
187
5

Genome-wide association identifies multiple ulcerative colitis susceptibility loci.
Dermot P B McGovern, Agnès Gardet, Leif Törkvist, Philippe Goyette, Jonah Essers, Kent D Taylor, Benjamin M Neale, Rick T H Ong, Caroline Lagacé, Chun Li,[...]. Nat Genet 2010
450
5

Familial diarrhea syndrome caused by an activating GUCY2C mutation.
Torunn Fiskerstrand, Najla Arshad, Bjørn Ivar Haukanes, Rune Rose Tronstad, Khanh Do-Cong Pham, Stefan Johansson, Bjarte Håvik, Siv L Tønder, Shawn E Levy, Damien Brackman,[...]. N Engl J Med 2012
120
5

MicroRNAs control intestinal epithelial differentiation, architecture, and barrier function.
Lindsay B McKenna, Jonathan Schug, Anastassios Vourekas, Jaime B McKenna, Nuria C Bramswig, Joshua R Friedman, Klaus H Kaestner. Gastroenterology 2010
206
5


Ulcerative colitis.
Silvio Danese, Claudio Fiocchi. N Engl J Med 2011
699
5

Gene expression analysis of peripheral cells for subclassification of pediatric inflammatory bowel disease in remission.
Pieter P E van Lierop, Sigrid M Swagemakers, Charlotte I de Bie, Sabine Middendorp, Peter van Baarlen, Janneke N Samsom, Wilfred F J van Ijcken, Johanna C Escher, Peter J van der Spek, Edward E S Nieuwenhuis. PLoS One 2013
10
50

Peripheral blood gene expression patterns discriminate among chronic inflammatory diseases and healthy controls and identify novel targets.
Bertalan Mesko, Szilard Poliska, Andrea Szegedi, Zoltan Szekanecz, Karoly Palatka, Maria Papp, Laszlo Nagy. BMC Med Genomics 2010
69
7

Inflammation, adenoma and cancer: objective classification of colon biopsy specimens with gene expression signature.
Orsolya Galamb, Balázs Györffy, Ferenc Sipos, Sándor Spisák, Anna Mária Németh, Pál Miheller, Zsolt Tulassay, Elek Dinya, Béla Molnár. Dis Markers 2008
69
7


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.