A citation-based method for searching scientific literature

A Gregory Matera, Rebecca M Terns, Michael P Terns. Nat Rev Mol Cell Biol 2007
Times Cited: 477







List of co-cited articles
1173 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity





The nuclear-retained noncoding RNA MALAT1 regulates alternative splicing by modulating SR splicing factor phosphorylation.
Vidisha Tripathi, Jonathan D Ellis, Zhen Shen, David Y Song, Qun Pan, Andrew T Watt, Susan M Freier, C Frank Bennett, Alok Sharma, Paula A Bubulya,[...]. Mol Cell 2010
10


A human snoRNA with microRNA-like functions.
Christine Ender, Azra Krek, Marc R Friedländer, Michaela Beitzinger, Lasse Weinmann, Wei Chen, Sébastien Pfeffer, Nikolaus Rajewsky, Gunter Meister. Mol Cell 2008
540
10

Eukaryotic snoRNAs: a paradigm for gene expression flexibility.
Giorgio Dieci, Milena Preti, Barbara Montanini. Genomics 2009
169
9

Landscape of transcription in human cells.
Sarah Djebali, Carrie A Davis, Angelika Merkel, Alex Dobin, Timo Lassmann, Ali Mortazavi, Andrea Tanzer, Julien Lagarde, Wei Lin, Felix Schlesinger,[...]. Nature 2012
8

Small nucleolar RNA 42 acts as an oncogene in lung tumorigenesis.
Y-P Mei, J-P Liao, J Shen, L Yu, B-L Liu, L Liu, R-Y Li, L Ji, S G Dorsey, Z-R Jiang,[...]. Oncogene 2012
156
8

The emerging landscape of small nucleolar RNAs in cell biology.
Fabien Dupuis-Sandoval, Mikaël Poirier, Michelle S Scott. Wiley Interdiscip Rev RNA 2015
119
8

Non-coding RNAs in human disease.
Manel Esteller. Nat Rev Genet 2011
8

A day in the life of the spliceosome.
A Gregory Matera, Zefeng Wang. Nat Rev Mol Cell Biol 2014
490
8

An architectural role for a nuclear noncoding RNA: NEAT1 RNA is essential for the structure of paraspeckles.
Christine M Clemson, John N Hutchinson, Sergio A Sara, Alexander W Ensminger, Archa H Fox, Andrew Chess, Jeanne B Lawrence. Mol Cell 2009
858
8

From snoRNA to miRNA: Dual function regulatory non-coding RNAs.
Michelle S Scott, Motoharu Ono. Biochimie 2011
144
8


Implication of snoRNA U50 in human breast cancer.
Xue-Yuan Dong, Peng Guo, Jeff Boyd, Xiaodong Sun, Qunna Li, Wei Zhou, Jin-Tang Dong. J Genet Genomics 2009
135
8

SnoRNA U50 is a candidate tumor-suppressor gene at 6q14.3 with a mutation associated with clinically significant prostate cancer.
Xue-Yuan Dong, Carmen Rodriguez, Peng Guo, Xiaodong Sun, Jeffrey T Talbot, Wei Zhou, John Petros, Qunna Li, Robert L Vessella, Adam S Kibel,[...]. Hum Mol Genet 2008
136
8

Biogenesis of small nucleolar ribonucleoproteins.
Witold Filipowicz, Vanda Pogacić. Curr Opin Cell Biol 2002
295
8

Clinical significance of SNORA42 as an oncogene and a prognostic biomarker in colorectal cancer.
Yoshinaga Okugawa, Yuji Toiyama, Shusuke Toden, Hiroki Mitoma, Takeshi Nagasaka, Koji Tanaka, Yasuhiro Inoue, Masato Kusunoki, C Richard Boland, Ajay Goel. Gut 2017
68
11

The noncoding RNAs SNORD50A and SNORD50B bind K-Ras and are recurrently deleted in human cancer.
Zurab Siprashvili, Dan E Webster, Danielle Johnston, Rajani M Shenoy, Alexander J Ungewickell, Aparna Bhaduri, Ross Flockhart, Brian J Zarnegar, Yonglu Che, Francesca Meschi,[...]. Nat Genet 2016
87
9

Small RNAs derived from snoRNAs.
Ryan J Taft, Evgeny A Glazov, Timo Lassmann, Yoshihide Hayashizaki, Piero Carninci, John S Mattick. RNA 2009
293
7

Insights into snoRNA biogenesis and processing from PAR-CLIP of snoRNA core proteins and small RNA sequencing.
Shivendra Kishore, Andreas R Gruber, Dominik J Jedlinski, Afzal P Syed, Hadi Jorjani, Mihaela Zavolan. Genome Biol 2013
73
9

Assembly and trafficking of box C/D and H/ACA snoRNPs.
Séverine Massenet, Edouard Bertrand, Céline Verheggen. RNA Biol 2017
72
9

An updated human snoRNAome.
Hadi Jorjani, Stephanie Kehr, Dominik J Jedlinski, Rafal Gumienny, Jana Hertel, Peter F Stadler, Mihaela Zavolan, Andreas R Gruber. Nucleic Acids Res 2016
108
7


Are snoRNAs and snoRNA host genes new players in cancer?
Gwyn T Williams, Farzin Farzaneh. Nat Rev Cancer 2012
194
7

Natural RNA circles function as efficient microRNA sponges.
Thomas B Hansen, Trine I Jensen, Bettina H Clausen, Jesper B Bramsen, Bente Finsen, Christian K Damgaard, Jørgen Kjems. Nature 2013
7

Elevated snoRNA biogenesis is essential in breast cancer.
H Su, T Xu, S Ganapathy, M Shadfan, M Long, T H-M Huang, I Thompson, Z-M Yuan. Oncogene 2014
105
7

snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs.
Laurent Lestrade, Michel J Weber. Nucleic Acids Res 2006
339
7

SNORD126 promotes HCC and CRC cell growth by activating the PI3K-AKT pathway through FGFR2.
Xianlong Fang, Dongmei Yang, Hongping Luo, Shuai Wu, Wenjie Dong, Jing Xiao, Sujing Yuan, Aimin Ni, Kang-Jian Zhang, Xin-Yuan Liu,[...]. J Mol Cell Biol 2017
39
17

Small Nucleolar Noncoding RNA SNORA23, Up-Regulated in Human Pancreatic Ductal Adenocarcinoma, Regulates Expression of Spectrin Repeat-Containing Nuclear Envelope 2 to Promote Growth and Metastasis of Xenograft Tumors in Mice.
Lin Cui, Kenji Nakano, Sumalee Obchoei, Kiyoko Setoguchi, Masaki Matsumoto, Tsuyoshi Yamamoto, Satoshi Obika, Kazuaki Shimada, Nobuyoshi Hiraoka. Gastroenterology 2017
29
24

Spliceosomal snRNA modifications and their function.
John Karijolich, Yi-Tao Yu. RNA Biol 2010
94
6

Identification of brain-specific and imprinted small nucleolar RNA genes exhibiting an unusual genomic organization.
J Cavaillé, K Buiting, M Kiefmann, M Lalande, C I Brannan, B Horsthemke, J P Bachellerie, J Brosius, A Hüttenhofer. Proc Natl Acad Sci U S A 2000
416
6

rRNA modifications and ribosome function.
Wayne A Decatur, Maurille J Fournier. Trends Biochem Sci 2002
404
6

circRNA biogenesis competes with pre-mRNA splicing.
Reut Ashwal-Fluss, Markus Meyer, Nagarjuna Reddy Pamudurti, Andranik Ivanov, Osnat Bartok, Mor Hanan, Naveh Evantal, Sebastian Memczak, Nikolaus Rajewsky, Sebastian Kadener. Mol Cell 2014
6

The multifunctional nucleolus.
François-Michel Boisvert, Silvana van Koningsbruggen, Joaquín Navascués, Angus I Lamond. Nat Rev Mol Cell Biol 2007
932
6

Long noncoding RNAs with snoRNA ends.
Qing-Fei Yin, Li Yang, Yang Zhang, Jian-Feng Xiang, Yue-Wei Wu, Gordon G Carmichael, Ling-Ling Chen. Mol Cell 2012
252
6

A novel class of small RNAs: tRNA-derived RNA fragments (tRFs).
Yong Sun Lee, Yoshiyuki Shibata, Ankit Malhotra, Anindya Dutta. Genes Dev 2009
594
6

Small nucleolar RNAs in cancer.
Kaiissar Mannoor, Jipei Liao, Feng Jiang. Biochim Biophys Acta 2012
94
6

Trimmomatic: a flexible trimmer for Illumina sequence data.
Anthony M Bolger, Marc Lohse, Bjoern Usadel. Bioinformatics 2014
6

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
6


Protein coding genes as hosts for noncoding RNA expression.
Vincent Boivin, Gabrielle Deschamps-Francoeur, Michelle S Scott. Semin Cell Dev Biol 2018
30
20

Small RNAs with big implications: new insights into H/ACA snoRNA function and their role in human disease.
Mary McMahon, Adrian Contreras, Davide Ruggero. Wiley Interdiscip Rev RNA 2015
71
8

Small nucleolar RNA signatures as biomarkers for non-small-cell lung cancer.
Jipei Liao, Lei Yu, Yuping Mei, Maria Guarnera, Jun Shen, Ruiyun Li, Zhenqiu Liu, Feng Jiang. Mol Cancer 2010
154
6

SNORA21 - An Oncogenic Small Nucleolar RNA, with a Prognostic Biomarker Potential in Human Colorectal Cancer.
Kazuhiro Yoshida, Shusuke Toden, Wenhao Weng, Kunitoshi Shigeyasu, Jinsei Miyoshi, Jacob Turner, Takeshi Nagasaka, Yanlei Ma, Tetsuji Takayama, Toshiyoshi Fujiwara,[...]. EBioMedicine 2017
29
20

Germline Duplication of SNORA18L5 Increases Risk for HBV-related Hepatocellular Carcinoma by Altering Localization of Ribosomal Proteins and Decreasing Levels of p53.
Pengbo Cao, Aiqing Yang, Rui Wang, Xia Xia, Yun Zhai, Yuanfeng Li, Fei Yang, Ying Cui, Weimin Xie, Ying Liu,[...]. Gastroenterology 2018
25
24

A Pan-cancer Analysis of the Expression and Clinical Relevance of Small Nucleolar RNAs in Human Cancer.
Jing Gong, Yajuan Li, Chun-Jie Liu, Yu Xiang, Chunlai Li, Youqiong Ye, Zhao Zhang, David H Hawke, Peter K Park, Lixia Diao,[...]. Cell Rep 2017
88
6


Small nucleolar RNAs U32a, U33, and U35a are critical mediators of metabolic stress.
Carlos I Michel, Christopher L Holley, Benjamin S Scruggs, Rohini Sidhu, Rita T Brookheart, Laura L Listenberger, Mark A Behlke, Daniel S Ory, Jean E Schaffer. Cell Metab 2011
131
5


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.