A citation-based method for searching scientific literature

Felix Mitelman, Bertil Johansson, Fredrik Mertens. Nat Rev Cancer 2007
Times Cited: 908







List of co-cited articles
774 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The emerging complexity of gene fusions in cancer.
Fredrik Mertens, Bertil Johansson, Thoas Fioretos, Felix Mitelman. Nat Rev Cancer 2015
383
25

Driver Fusions and Their Implications in the Development and Treatment of Human Cancers.
Qingsong Gao, Wen-Wei Liang, Steven M Foltz, Gnanavel Mutharasu, Reyka G Jayasinghe, Song Cao, Wen-Wei Liao, Sheila M Reynolds, Matthew A Wyczalkowski, Lijun Yao,[...]. Cell Rep 2018
253
19

Accuracy assessment of fusion transcript detection via read-mapping and de novo fusion transcript assembly-based methods.
Brian J Haas, Alexander Dobin, Bo Li, Nicolas Stransky, Nathalie Pochet, Aviv Regev. Genome Biol 2019
186
14

Transcriptome sequencing to detect gene fusions in cancer.
Christopher A Maher, Chandan Kumar-Sinha, Xuhong Cao, Shanker Kalyana-Sundaram, Bo Han, Xiaojun Jing, Lee Sam, Terrence Barrette, Nallasivam Palanisamy, Arul M Chinnaiyan. Nature 2009
596
13

The landscape of kinase fusions in cancer.
Nicolas Stransky, Ethan Cerami, Stefanie Schalm, Joseph L Kim, Christoph Lengauer. Nat Commun 2014
589
13

The landscape and therapeutic relevance of cancer-associated transcript fusions.
K Yoshihara, Q Wang, W Torres-Garcia, S Zheng, R Vegesna, H Kim, R G W Verhaak. Oncogene 2015
306
11

Diagnosis of fusion genes using targeted RNA sequencing.
Erin E Heyer, Ira W Deveson, Danson Wooi, Christina I Selinger, Ruth J Lyons, Vanessa M Hayes, Sandra A O'Toole, Mandy L Ballinger, Devinder Gill, David M Thomas,[...]. Nat Commun 2019
73
13

Identification of the transforming EML4-ALK fusion gene in non-small-cell lung cancer.
Manabu Soda, Young Lim Choi, Munehiro Enomoto, Shuji Takada, Yoshihiro Yamashita, Shunpei Ishikawa, Shin-ichiro Fujiwara, Hideki Watanabe, Kentaro Kurashina, Hisashi Hatanaka,[...]. Nature 2007
10


STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
10

Transforming fusions of FGFR and TACC genes in human glioblastoma.
Devendra Singh, Joseph Minhow Chan, Pietro Zoppoli, Francesco Niola, Ryan Sullivan, Angelica Castano, Eric Minwei Liu, Jonathan Reichel, Paola Porrati, Serena Pellegatta,[...]. Science 2012
524
9

Efficacy of Larotrectinib in TRK Fusion-Positive Cancers in Adults and Children.
Alexander Drilon, Theodore W Laetsch, Shivaani Kummar, Steven G DuBois, Ulrik N Lassen, George D Demetri, Michael Nathenson, Robert C Doebele, Anna F Farago, Alberto S Pappo,[...]. N Engl J Med 2018
9

Chimeras taking shape: potential functions of proteins encoded by chimeric RNA transcripts.
Milana Frenkel-Morgenstern, Vincent Lacroix, Iakes Ezkurdia, Yishai Levin, Alexandra Gabashvili, Jaime Prilusky, Angela Del Pozo, Michael Tress, Rory Johnson, Roderic Guigo,[...]. Genome Res 2012
103
8

Identifying fusion transcripts using next generation sequencing.
Shailesh Kumar, Sundus Khalid Razzaq, Angie Duy Vo, Mamta Gautam, Hui Li. Wiley Interdiscip Rev RNA 2016
54
14

Gene fusion with an ETS DNA-binding domain caused by chromosome translocation in human tumours.
O Delattre, J Zucman, B Plougastel, C Desmaze, T Melot, M Peter, H Kovar, I Joubert, P de Jong, G Rouleau. Nature 1992
7

Recurrent fusion of TMPRSS2 and ETS transcription factor genes in prostate cancer.
Scott A Tomlins, Daniel R Rhodes, Sven Perner, Saravana M Dhanasekaran, Rohit Mehra, Xiao-Wei Sun, Sooryanarayana Varambally, Xuhong Cao, Joelle Tchinda, Rainer Kuefer,[...]. Science 2005
7

Chimeric RNAs and their implications in cancer.
Zi Li, Fujun Qin, Hui Li. Curr Opin Genet Dev 2018
21
33


Accurate and efficient detection of gene fusions from RNA sequencing data.
Sebastian Uhrig, Julia Ellermann, Tatjana Walther, Pauline Burkhardt, Martina Fröhlich, Barbara Hutter, Umut H Toprak, Olaf Neumann, Albrecht Stenzinger, Claudia Scholl,[...]. Genome Res 2021
72
9

A new subtype of bone sarcoma defined by BCOR-CCNB3 gene fusion.
Gaëlle Pierron, Franck Tirode, Carlo Lucchesi, Stéphanie Reynaud, Stelly Ballet, Sarah Cohen-Gogo, Virginie Perrin, Jean-Michel Coindre, Olivier Delattre. Nat Genet 2012
294
6

TumorFusions: an integrative resource for cancer-associated transcript fusions.
Xin Hu, Qianghu Wang, Ming Tang, Floris Barthel, Samirkumar Amin, Kosuke Yoshihara, Frederick M Lang, Emmanuel Martinez-Ledesma, Soo Hyun Lee, Siyuan Zheng,[...]. Nucleic Acids Res 2018
115
6

Recurrent chimeric fusion RNAs in non-cancer tissues and cells.
Mihaela Babiceanu, Fujun Qin, Zhongqiu Xie, Yuemeng Jia, Kevin Lopez, Nick Janus, Loryn Facemire, Shailesh Kumar, Yuwei Pang, Yanjun Qi,[...]. Nucleic Acids Res 2016
105
6

Gene fusions and chimeric RNAs, and their implications in cancer.
Hao Wu, Xiaorong Li, Hui Li. Genes Dis 2019
19
31

Hallmarks of cancer: the next generation.
Douglas Hanahan, Robert A Weinberg. Cell 2011
6

Genomic basis for RNA alterations in cancer.
Claudia Calabrese, Natalie R Davidson, Deniz Demircioğlu, Nuno A Fonseca, Yao He, André Kahles, Kjong-Van Lehmann, Fenglin Liu, Yuichi Shiraishi, Cameron M Soulette,[...]. Nature 2020
165
6

Immunogenic neoantigens derived from gene fusions stimulate T cell responses.
Wei Yang, Ken-Wing Lee, Raghvendra M Srivastava, Fengshen Kuo, Chirag Krishna, Diego Chowell, Vladimir Makarov, Douglas Hoen, Martin G Dalin, Leonard Wexler,[...]. Nat Med 2019
161
6

The biogenesis of chromosome translocations.
Vassilis Roukos, Tom Misteli. Nat Cell Biol 2014
98
6

Fusion of FIG to the receptor tyrosine kinase ROS in a glioblastoma with an interstitial del(6)(q21q21).
Alain Charest, Keara Lane, Kevin McMahon, Julie Park, Elizabeth Preisinger, Helen Conroy, David Housman. Genes Chromosomes Cancer 2003
147
5


The 2016 revision to the World Health Organization classification of myeloid neoplasms and acute leukemia.
Daniel A Arber, Attilio Orazi, Robert Hasserjian, Jürgen Thiele, Michael J Borowitz, Michelle M Le Beau, Clara D Bloomfield, Mario Cazzola, James W Vardiman. Blood 2016
5

Complex landscapes of somatic rearrangement in human breast cancer genomes.
Philip J Stephens, David J McBride, Meng-Lay Lin, Ignacio Varela, Erin D Pleasance, Jared T Simpson, Lucy A Stebbings, Catherine Leroy, Sarah Edkins, Laura J Mudie,[...]. Nature 2009
626
5

Frequent fusion of the JAZF1 and JJAZ1 genes in endometrial stromal tumors.
J I Koontz, A L Soreng, M Nucci, F C Kuo, P Pauwels, H van Den Berghe, P Dal Cin, J A Fletcher, J Sklar. Proc Natl Acad Sci U S A 2001
266
5

deFuse: an algorithm for gene fusion discovery in tumor RNA-Seq data.
Andrew McPherson, Fereydoun Hormozdiari, Abdalnasser Zayed, Ryan Giuliany, Gavin Ha, Mark G F Sun, Malachi Griffith, Alireza Heravi Moussavi, Janine Senz, Nataliya Melnyk,[...]. PLoS Comput Biol 2011
387
5

Topological domains in mammalian genomes identified by analysis of chromatin interactions.
Jesse R Dixon, Siddarth Selvaraj, Feng Yue, Audrey Kim, Yan Li, Yin Shen, Ming Hu, Jun S Liu, Bing Ren. Nature 2012
5

Landscape of gene fusions in epithelial cancers: seq and ye shall find.
Chandan Kumar-Sinha, Shanker Kalyana-Sundaram, Arul M Chinnaiyan. Genome Med 2015
99
5

Pan-Cancer Analysis Reveals the Diverse Landscape of Novel Sense and Antisense Fusion Transcripts.
Neetha Nanoth Vellichirammal, Abrar Albahrani, Jasjit K Banwait, Nitish K Mishra, You Li, Shrabasti Roychoudhury, Mathew J Kling, Sameer Mirza, Kishor K Bhakat, Vimla Band,[...]. Mol Ther Nucleic Acids 2020
14
35


Intergenically Spliced Chimeric RNAs in Cancer.
Yuemeng Jia, Zhongqiu Xie, Hui Li. Trends Cancer 2016
54
9

Deep RNA sequencing analysis of readthrough gene fusions in human prostate adenocarcinoma and reference samples.
Serban Nacu, Wenlin Yuan, Zhengyan Kan, Deepali Bhatt, Celina Sanchez Rivers, Jeremy Stinson, Brock A Peters, Zora Modrusan, Kenneth Jung, Somasekar Seshagiri,[...]. BMC Med Genomics 2011
113
5

A neoplastic gene fusion mimics trans-splicing of RNAs in normal human cells.
Hui Li, Jinglan Wang, Gil Mor, Jeffrey Sklar. Science 2008
205
5

SLC45A3-ELK4 is a novel and frequent erythroblast transformation-specific fusion transcript in prostate cancer.
David S Rickman, Dorothee Pflueger, Benjamin Moss, Vanessa E VanDoren, Chen X Chen, Alexandre de la Taille, Rainer Kuefer, Ashutosh K Tewari, Sunita R Setlur, Francesca Demichelis,[...]. Cancer Res 2009
148
5

Transcription-mediated gene fusion in the human genome.
Pinchas Akiva, Amir Toporik, Sarit Edelheit, Yifat Peretz, Alex Diber, Ronen Shemesh, Amit Novik, Rotem Sorek. Genome Res 2006
208
5

Chimeric transcript generated by cis-splicing of adjacent genes regulates prostate cancer cell proliferation.
Yanmei Zhang, Mei Gong, Huiling Yuan, Hong G Park, Henry F Frierson, Hui Li. Cancer Discov 2012
101
5

Comparative assessment of methods for the fusion transcripts detection from RNA-Seq data.
Shailesh Kumar, Angie Duy Vo, Fujun Qin, Hui Li. Sci Rep 2016
91
5

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
5

Cancer-Specific Retargeting of BAF Complexes by a Prion-like Domain.
Gaylor Boulay, Gabriel J Sandoval, Nicolo Riggi, Sowmya Iyer, Rémi Buisson, Beverly Naigles, Mary E Awad, Shruthi Rengarajan, Angela Volorio, Matthew J McBride,[...]. Cell 2017
215
5

The genomic landscape of pediatric Ewing sarcoma.
Brian D Crompton, Chip Stewart, Amaro Taylor-Weiner, Gabriela Alexe, Kyle C Kurek, Monica L Calicchio, Adam Kiezun, Scott L Carter, Sachet A Shukla, Swapnil S Mehta,[...]. Cancer Discov 2014
303
5

Fusion transcripts: Unexploited vulnerabilities in cancer?
Carla Neckles, Soumya Sundara Rajan, Natasha J Caplen. Wiley Interdiscip Rev RNA 2020
13
38

Fusions in solid tumours: diagnostic strategies, targeted therapy, and acquired resistance.
Alison M Schram, Matthew T Chang, Philip Jonsson, Alexander Drilon. Nat Rev Clin Oncol 2017
163
5

Recurrent CIC Gene Abnormalities in Angiosarcomas: A Molecular Study of 120 Cases With Concurrent Investigation of PLCG1, KDR, MYC, and FLT4 Gene Alterations.
Shih-Chiang Huang, Lei Zhang, Yun-Shao Sung, Chun-Liang Chen, Yu-Chien Kao, Narasimhan P Agaram, Samuel Singer, William D Tap, Sandra D'Angelo, Cristina R Antonescu. Am J Surg Pathol 2016
96
5


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.