A citation-based method for searching scientific literature

Ethan K Scott, Lindsay Mason, Aristides B Arrenberg, Limor Ziv, Nathan J Gosse, Tong Xiao, Neil C Chi, Kazuhide Asakawa, Koichi Kawakami, Herwig Baier. Nat Methods 2007
Times Cited: 260







List of co-cited articles
980 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Genetic dissection of neural circuits by Tol2 transposon-mediated Gal4 gene and enhancer trapping in zebrafish.
Kazuhide Asakawa, Maximiliano L Suster, Kanta Mizusawa, Saori Nagayoshi, Tomoya Kotani, Akihiro Urasaki, Yasuyuki Kishimoto, Masahiko Hibi, Koichi Kawakami. Proc Natl Acad Sci U S A 2008
337
39

Transactivation from Gal4-VP16 transgenic insertions for tissue-specific cell labeling and ablation in zebrafish.
Jon M Davison, Courtney M Akitake, Mary G Goll, Jerry M Rhee, Nathan Gosse, Herwig Baier, Marnie E Halpern, Steven D Leach, Michael J Parsons. Dev Biol 2007
235
20

Stages of embryonic development of the zebrafish.
C B Kimmel, W W Ballard, S R Kimmel, B Ullmann, T F Schilling. Dev Dyn 1995
20

Transgenerational analysis of transcriptional silencing in zebrafish.
Courtney M Akitake, Michelle Macurak, Marnie E Halpern, Mary G Goll. Dev Biol 2011
95
18

A transposon-mediated gene trap approach identifies developmentally regulated genes in zebrafish.
Koichi Kawakami, Hisashi Takeda, Noriko Kawakami, Makoto Kobayashi, Naoto Matsuda, Masayoshi Mishina. Dev Cell 2004
578
18

The Tol2kit: a multisite gateway-based construction kit for Tol2 transposon transgenesis constructs.
Kristen M Kwan, Esther Fujimoto, Clemens Grabher, Benjamin D Mangum, Melissa E Hardy, Douglas S Campbell, John M Parant, H Joseph Yost, John P Kanki, Chi-Bin Chien. Dev Dyn 2007
18

Whole-brain activity mapping onto a zebrafish brain atlas.
Owen Randlett, Caroline L Wee, Eva A Naumann, Onyeka Nnaemeka, David Schoppik, James E Fitzgerald, Ruben Portugues, Alix M B Lacoste, Clemens Riegler, Florian Engert,[...]. Nat Methods 2015
174
18

Whole-brain functional imaging at cellular resolution using light-sheet microscopy.
Misha B Ahrens, Michael B Orger, Drew N Robson, Jennifer M Li, Philipp J Keller. Nat Methods 2013
579
17


zTrap: zebrafish gene trap and enhancer trap database.
Koichi Kawakami, Gembu Abe, Tokuko Asada, Kazuhide Asakawa, Ryuichi Fukuda, Aki Ito, Pradeep Lal, Naoko Mouri, Akira Muto, Maximilliano L Suster,[...]. BMC Dev Biol 2010
98
16

Optogenetic dissection of a behavioural module in the vertebrate spinal cord.
Claire Wyart, Filippo Del Bene, Erica Warp, Ethan K Scott, Dirk Trauner, Herwig Baier, Ehud Y Isacoff. Nature 2009
260
16


Fiji: an open-source platform for biological-image analysis.
Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid,[...]. Nat Methods 2012
15

Transgenic tools to characterize neuronal properties of discrete populations of zebrafish neurons.
Chie Satou, Yukiko Kimura, Hiromi Hirata, Maximiliano L Suster, Koichi Kawakami, Shin-ichi Higashijima. Development 2013
96
14

Ultrasensitive fluorescent proteins for imaging neuronal activity.
Tsai-Wen Chen, Trevor J Wardill, Yi Sun, Stefan R Pulver, Sabine L Renninger, Amy Baohan, Eric R Schreiter, Rex A Kerr, Michael B Orger, Vivek Jayaraman,[...]. Nature 2013
14


Functional architecture of an optic flow-responsive area that drives horizontal eye movements in zebrafish.
Fumi Kubo, Bastian Hablitzel, Marco Dal Maschio, Wolfgang Driever, Herwig Baier, Aristides B Arrenberg. Neuron 2014
77
16


Filtering of visual information in the tectum by an identified neural circuit.
Filippo Del Bene, Claire Wyart, Estuardo Robles, Amanda Tran, Loren Looger, Ethan K Scott, Ehud Y Isacoff, Herwig Baier. Science 2010
154
13


Targeted gene expression by the Gal4-UAS system in zebrafish.
Kazuhide Asakawa, Koichi Kawakami. Dev Growth Differ 2008
113
13

A 3D Searchable Database of Transgenic Zebrafish Gal4 and Cre Lines for Functional Neuroanatomy Studies.
Gregory D Marquart, Kathryn M Tabor, Mary Brown, Jennifer L Strykowski, Gaurav K Varshney, Matthew C LaFave, Thomas Mueller, Shawn M Burgess, Shin-Ichi Higashijima, Harold A Burgess. Front Neural Circuits 2015
53
24

Optical control of zebrafish behavior with halorhodopsin.
Aristides B Arrenberg, Filippo Del Bene, Herwig Baier. Proc Natl Acad Sci U S A 2009
158
12

The zebrafish reference genome sequence and its relationship to the human genome.
Kerstin Howe, Matthew D Clark, Carlos F Torroja, James Torrance, Camille Berthelot, Matthieu Muffato, John E Collins, Sean Humphray, Karen McLaren, Lucy Matthews,[...]. Nature 2013
12

Optimization of a GCaMP calcium indicator for neural activity imaging.
Jasper Akerboom, Tsai-Wen Chen, Trevor J Wardill, Lin Tian, Jonathan S Marvin, Sevinç Mutlu, Nicole Carreras Calderón, Federico Esposti, Bart G Borghuis, Xiaonan Richard Sun,[...]. J Neurosci 2012
694
12

Transcriptional silencing and reactivation in transgenic zebrafish.
Mary G Goll, Ryan Anderson, Didier Y R Stainier, Allan C Spradling, Marnie E Halpern. Genetics 2009
104
12

Highly efficient CRISPR/Cas9-mediated knock-in in zebrafish by homology-independent DNA repair.
Thomas O Auer, Karine Duroure, Anne De Cian, Jean-Paul Concordet, Filippo Del Bene. Genome Res 2014
374
12

A structural and functional ground plan for neurons in the hindbrain of zebrafish.
Amina Kinkhabwala, Michael Riley, Minoru Koyama, Joost Monen, Chie Satou, Yukiko Kimura, Shin-Ichi Higashijima, Joseph Fetcho. Proc Natl Acad Sci U S A 2011
126
11

Brain-wide neuronal dynamics during motor adaptation in zebrafish.
Misha B Ahrens, Jennifer M Li, Michael B Orger, Drew N Robson, Alexander F Schier, Florian Engert, Ruben Portugues. Nature 2012
324
11

Layer-specific targeting of direction-selective neurons in the zebrafish optic tectum.
Jens P Gabriel, Chintan A Trivedi, Colette M Maurer, Soojin Ryu, Johann H Bollmann. Neuron 2012
70
15

Whole-brain activity maps reveal stereotyped, distributed networks for visuomotor behavior.
Ruben Portugues, Claudia E Feierstein, Florian Engert, Michael B Orger. Neuron 2014
137
11

nacre encodes a zebrafish microphthalmia-related protein that regulates neural-crest-derived pigment cell fate.
J A Lister, C P Robertson, T Lepage, S L Johnson, D W Raible. Development 1999
520
11

A Visual Pathway for Looming-Evoked Escape in Larval Zebrafish.
Incinur Temizer, Joseph C Donovan, Herwig Baier, Julia L Semmelhack. Curr Biol 2015
101
11

A dedicated visual pathway for prey detection in larval zebrafish.
Julia L Semmelhack, Joseph C Donovan, Tod R Thiele, Enrico Kuehn, Eva Laurell, Herwig Baier. Elife 2014
88
12

Zebrabow: multispectral cell labeling for cell tracing and lineage analysis in zebrafish.
Y Albert Pan, Tom Freundlich, Tamily A Weissman, David Schoppik, X Cindy Wang, Steve Zimmerman, Brian Ciruna, Joshua R Sanes, Jeff W Lichtman, Alexander F Schier. Development 2013
172
10


Real-time visualization of neuronal activity during perception.
Akira Muto, Masamichi Ohkura, Gembu Abe, Junichi Nakai, Koichi Kawakami. Curr Biol 2013
128
10

Targeted ablation of beta cells in the embryonic zebrafish pancreas using E. coli nitroreductase.
Harshan Pisharath, Jerry M Rhee, Michelle A Swanson, Steven D Leach, Michael J Parsons. Mech Dev 2007
251
9

Escape behavior elicited by single, channelrhodopsin-2-evoked spikes in zebrafish somatosensory neurons.
Adam D Douglass, Sebastian Kraves, Karl Deisseroth, Alexander F Schier, Florian Engert. Curr Biol 2008
166
9

An optical marker based on the UV-induced green-to-red photoconversion of a fluorescent protein.
Ryoko Ando, Hiroshi Hama, Miki Yamamoto-Hino, Hideaki Mizuno, Atsushi Miyawaki. Proc Natl Acad Sci U S A 2002
680
9

Optogenetics in a transparent animal: circuit function in the larval zebrafish.
Ruben Portugues, Kristen E Severi, Claire Wyart, Misha B Ahrens. Curr Opin Neurobiol 2013
57
15

Ubiquitous transgene expression and Cre-based recombination driven by the ubiquitin promoter in zebrafish.
Christian Mosimann, Charles K Kaufman, Pulin Li, Emily K Pugach, Owen J Tamplin, Leonard I Zon. Development 2011
221
9


Classification of object size in retinotectal microcircuits.
Stephanie J Preuss, Chintan A Trivedi, Colette M vom Berg-Maurer, Soojin Ryu, Johann H Bollmann. Curr Biol 2014
56
16

Sensorimotor decision making in the zebrafish tectum.
Alison J Barker, Herwig Baier. Curr Biol 2015
49
18

Visuomotor transformations underlying hunting behavior in zebrafish.
Isaac H Bianco, Florian Engert. Curr Biol 2015
82
10

High-resolution analysis of central nervous system expression patterns in zebrafish Gal4 enhancer-trap lines.
Hideo Otsuna, David A Hutcheson, Robert N Duncan, Adam D McPherson, Aaron N Scoresby, Brooke F Gaynes, Zongzong Tong, Esther Fujimoto, Kristen M Kwan, Chi-Bin Chien,[...]. Dev Dyn 2015
16
56

Linking Neurons to Network Function and Behavior by Two-Photon Holographic Optogenetics and Volumetric Imaging.
Marco Dal Maschio, Joseph C Donovan, Thomas O Helmbrecht, Herwig Baier. Neuron 2017
56
16

The dorsal raphe modulates sensory responsiveness during arousal in zebrafish.
Tohei Yokogawa, Markus C Hannan, Harold A Burgess. J Neurosci 2012
70
11

Transparent adult zebrafish as a tool for in vivo transplantation analysis.
Richard Mark White, Anna Sessa, Christopher Burke, Teresa Bowman, Jocelyn LeBlanc, Craig Ceol, Caitlin Bourque, Michael Dovey, Wolfram Goessling, Caroline Erter Burns,[...]. Cell Stem Cell 2008
680
8


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.