A citation-based method for searching scientific literature

Shuhei Matsuoka, Bryan A Ballif, Agata Smogorzewska, E Robert McDonald, Kristen E Hurov, Ji Luo, Corey E Bakalarski, Zhenming Zhao, Nicole Solimini, Yaniv Lerenthal, Yosef Shiloh, Steven P Gygi, Stephen J Elledge. Science 2007
Times Cited: 2123







List of co-cited articles
1018 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



ATM, ATR, and DNA-PK: The Trinity at the Heart of the DNA Damage Response.
Andrew N Blackford, Stephen P Jackson. Mol Cell 2017
660
18




The DNA-damage response in human biology and disease.
Stephen P Jackson, Jiri Bartek. Nature 2009
12

A single ataxia telangiectasia gene with a product similar to PI-3 kinase.
K Savitsky, A Bar-Shira, S Gilad, G Rotman, Y Ziv, L Vanagaite, D A Tagle, S Smith, T Uziel, S Sfez,[...]. Science 1995
11

ATM-dependent and -independent dynamics of the nuclear phosphoproteome after DNA damage.
Ariel Bensimon, Alexander Schmidt, Yael Ziv, Ran Elkon, Shih-Ya Wang, David J Chen, Ruedi Aebersold, Yosef Shiloh. Sci Signal 2010
197
11

The DNA damage response: making it safe to play with knives.
Alberto Ciccia, Stephen J Elledge. Mol Cell 2010
11

Causes and consequences of replication stress.
Michelle K Zeman, Karlene A Cimprich. Nat Cell Biol 2014
967
11

Structures of closed and open conformations of dimeric human ATM.
Domagoj Baretić, Hannah K Pollard, David I Fisher, Christopher M Johnson, Balaji Santhanam, Caroline M Truman, Tomas Kouba, Alan R Fersht, Christopher Phillips, Roger L Williams. Sci Adv 2017
57
17

TopBP1 activates the ATR-ATRIP complex.
Akiko Kumagai, Joon Lee, Hae Yong Yoo, William G Dunphy. Cell 2006
518
10

Requirement of the MRN complex for ATM activation by DNA damage.
Tamar Uziel, Yaniv Lerenthal, Lilach Moyal, Yair Andegeko, Leonid Mittelman, Yosef Shiloh. EMBO J 2003
763
10

Conserved modes of recruitment of ATM, ATR and DNA-PKcs to sites of DNA damage.
Jacob Falck, Julia Coates, Stephen P Jackson. Nature 2005
899
9

ATM activation by oxidative stress.
Zhi Guo, Sergei Kozlov, Martin F Lavin, Maria D Person, Tanya T Paull. Science 2010
718
9

ATM phosphorylates histone H2AX in response to DNA double-strand breaks.
S Burma, B P Chen, M Murphy, A Kurimasa, D J Chen. J Biol Chem 2001
9

DNA damage sensing by the ATM and ATR kinases.
Alexandre Maréchal, Lee Zou. Cold Spring Harb Perspect Biol 2013
631
9

Hallmarks of cancer: the next generation.
Douglas Hanahan, Robert A Weinberg. Cell 2011
9

Two-step activation of ATM by DNA and the Mre11-Rad50-Nbs1 complex.
Aude Dupré, Louise Boyer-Chatenet, Jean Gautier. Nat Struct Mol Biol 2006
165
8

Common mechanisms of PIKK regulation.
Courtney A Lovejoy, David Cortez. DNA Repair (Amst) 2009
182
8

Site-specific phosphorylation dynamics of the nuclear proteome during the DNA damage response.
Martin V Bennetzen, Dorthe Helena Larsen, Jakob Bunkenborg, Jiri Bartek, Jiri Lukas, Jens S Andersen. Mol Cell Proteomics 2010
187
8


Playing the end game: DNA double-strand break repair pathway choice.
J Ross Chapman, Martin R G Taylor, Simon J Boulton. Mol Cell 2012
958
8


Cryo-EM structure of human ATR-ATRIP complex.
Qinhui Rao, Mengjie Liu, Yuan Tian, Zihan Wu, Yuhan Hao, Lei Song, Zhaoyu Qin, Chen Ding, Hong-Wei Wang, Jiawei Wang,[...]. Cell Res 2018
32
21

3.9 Å structure of the yeast Mec1-Ddc2 complex, a homolog of human ATR-ATRIP.
Xuejuan Wang, Tingting Ran, Xuan Zhang, Jiyu Xin, Zhihui Zhang, Tengwei Wu, Weiwu Wang, Gang Cai. Science 2017
38
18

Proteomic investigations reveal a role for RNA processing factor THRAP3 in the DNA damage response.
Petra Beli, Natalia Lukashchuk, Sebastian A Wagner, Brian T Weinert, Jesper V Olsen, Linda Baskcomb, Matthias Mann, Stephen P Jackson, Chunaram Choudhary. Mol Cell 2012
211
7

ATM and ATR as therapeutic targets in cancer.
Anika Maria Weber, Anderson Joseph Ryan. Pharmacol Ther 2015
313
7

Profiling of UV-induced ATM/ATR signaling pathways.
Matthew P Stokes, John Rush, Joan Macneill, Jian Min Ren, Kam Sprott, Julie Nardone, Vicky Yang, Sean A Beausoleil, Steven P Gygi, Mark Livingstone,[...]. Proc Natl Acad Sci U S A 2007
222
7

Activation of the ATR kinase by the RPA-binding protein ETAA1.
Peter Haahr, Saskia Hoffmann, Maxim A X Tollenaere, Teresa Ho, Luis Ignacio Toledo, Matthias Mann, Simon Bekker-Jensen, Markus Räschle, Niels Mailand. Nat Cell Biol 2016
122
7

ATR and ATRIP: partners in checkpoint signaling.
D Cortez, S Guntuku, J Qin, S J Elledge. Science 2001
696
7

A cell cycle-dependent regulatory circuit composed of 53BP1-RIF1 and BRCA1-CtIP controls DNA repair pathway choice.
Cristina Escribano-Díaz, Alexandre Orthwein, Amélie Fradet-Turcotte, Mengtan Xing, Jordan T F Young, Ján Tkáč, Michael A Cook, Adam P Rosebrock, Meagan Munro, Marella D Canny,[...]. Mol Cell 2013
540
7

ATM Mutations in Cancer: Therapeutic Implications.
Michael Choi, Thomas Kipps, Razelle Kurzrock. Mol Cancer Ther 2016
200
7

A pathway of double-strand break rejoining dependent upon ATM, Artemis, and proteins locating to gamma-H2AX foci.
Enriqueta Riballo, Martin Kühne, Nicole Rief, Aidan Doherty, Graeme C M Smith, María-José Recio, Caroline Reis, Kirsten Dahm, Andreas Fricke, Andrea Krempler,[...]. Mol Cell 2004
654
7

Cryo-EM Structure of Nucleotide-Bound Tel1ATM Unravels the Molecular Basis of Inhibition and Structural Rationale for Disease-Associated Mutations.
Luke A Yates, Rhys M Williams, Sarem Hailemariam, Rafael Ayala, Peter Burgers, Xiaodong Zhang. Structure 2020
18
33

Near-Complete Structure and Model of Tel1ATM from Chaetomium thermophilum Reveals a Robust Autoinhibited ATP State.
Marijke Jansma, Christian Linke-Winnebeck, Sebastian Eustermann, Katja Lammens, Dirk Kostrewa, Kristina Stakyte, Claudia Litz, Brigitte Kessler, Karl-Peter Hopfner. Structure 2020
14
42

Emerging common themes in regulation of PIKKs and PI3Ks.
Harri Lempiäinen, Thanos D Halazonetis. EMBO J 2009
204
6

Structural basis of allosteric regulation of Tel1/ATM kinase.
Jiyu Xin, Zhu Xu, Xuejuan Wang, Yanhua Tian, Zhihui Zhang, Gang Cai. Cell Res 2019
12
50

The PRIDE database and related tools and resources in 2019: improving support for quantification data.
Yasset Perez-Riverol, Attila Csordas, Jingwen Bai, Manuel Bernal-Llinares, Suresh Hewapathirana, Deepti J Kundu, Avinash Inuganti, Johannes Griss, Gerhard Mayer, Martin Eisenacher,[...]. Nucleic Acids Res 2019
6

Mechanisms of DNA damage, repair, and mutagenesis.
Nimrat Chatterjee, Graham C Walker. Environ Mol Mutagen 2017
383
6

A genome-wide siRNA screen reveals diverse cellular processes and pathways that mediate genome stability.
Renee D Paulsen, Deena V Soni, Roy Wollman, Angela T Hahn, Muh-Ching Yee, Anna Guan, Jayne A Hesley, Steven C Miller, Evan F Cromwell, David E Solow-Cordero,[...]. Mol Cell 2009
373
6

Mechanisms of ATM Activation.
Tanya T Paull. Annu Rev Biochem 2015
247
6

Orchestration of the DNA-damage response by the RNF8 ubiquitin ligase.
Nadine K Kolas, J Ross Chapman, Shinichiro Nakada, Jarkko Ylanko, Richard Chahwan, Frédéric D Sweeney, Stephanie Panier, Megan Mendez, Jan Wildenhain, Timothy M Thomson,[...]. Science 2007
667
6

Identification and characterization of a novel and specific inhibitor of the ataxia-telangiectasia mutated kinase ATM.
Ian Hickson, Yan Zhao, Caroline J Richardson, Sharon J Green, Niall M B Martin, Alisdair I Orr, Philip M Reaper, Stephen P Jackson, Nicola J Curtin, Graeme C M Smith. Cancer Res 2004
917
6

RPA-Binding Protein ETAA1 Is an ATR Activator Involved in DNA Replication Stress Response.
Yuan-Cho Lee, Qing Zhou, Junjie Chen, Jingsong Yuan. Curr Biol 2016
67
8

ETAA1 acts at stalled replication forks to maintain genome integrity.
Thomas E Bass, Jessica W Luzwick, Gina Kavanaugh, Clinton Carroll, Huzefa Dungrawala, Gloria G Glick, Michael D Feldkamp, Reid Putney, Walter J Chazin, David Cortez. Nat Cell Biol 2016
125
6

The ATM-Chk2 and ATR-Chk1 pathways in DNA damage signaling and cancer.
Joanne Smith, Lye Mun Tho, Naihan Xu, David A Gillespie. Adv Cancer Res 2010
721
6

The Rad9-Hus1-Rad1 checkpoint clamp regulates interaction of TopBP1 with ATR.
Joon Lee, Akiko Kumagai, William G Dunphy. J Biol Chem 2007
206
6

Repair of endogenous DNA damage.
T Lindahl, D E Barnes. Cold Spring Harb Symp Quant Biol 2000
337
6



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.