A citation-based method for searching scientific literature

Hai-Ying M Cheng, Joseph W Papp, Olga Varlamova, Heather Dziema, Brandon Russell, John P Curfman, Takanobu Nakazawa, Kimiko Shimizu, Hitoshi Okamura, Soren Impey, Karl Obrietan. Neuron 2007
Times Cited: 429







List of co-cited articles
1109 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


miRNAs are required for generating a time delay critical for the circadian oscillator.
Rongmin Chen, Matthew D'Alessandro, Choogon Lee. Curr Biol 2013
74
28

miRNA-132 orchestrates chromatin remodeling and translational control of the circadian clock.
Matías Alvarez-Saavedra, Ghadi Antoun, Akiko Yanagiya, Reynaldo Oliva-Hernandez, Daniel Cornejo-Palma, Carolina Perez-Iratxeta, Nahum Sonenberg, Hai-Ying M Cheng. Hum Mol Genet 2011
144
19


Expression and rhythmic modulation of circulating microRNAs targeting the clock gene Bmal1 in mice.
Vikram R Shende, Marianna M Goldrick, Suchitra Ramani, David J Earnest. PLoS One 2011
79
17

MicroRNAs shape circadian hepatic gene expression on a transcriptome-wide scale.
Ngoc-Hien Du, Alaaddin Bulak Arpat, Mara De Matos, David Gatfield. Elife 2014
73
17

Transcriptional architecture and chromatin landscape of the core circadian clock in mammals.
Nobuya Koike, Seung-Hee Yoo, Hung-Chung Huang, Vivek Kumar, Choogon Lee, Tae-Kyung Kim, Joseph S Takahashi. Science 2012
863
13

A novel role of microRNA 17-5p in the modulation of circadian rhythm.
Qian Gao, Lan Zhou, Su-Yu Yang, Ji-Min Cao. Sci Rep 2016
24
54

Period2 3'-UTR and microRNA-24 regulate circadian rhythms by repressing PERIOD2 protein accumulation.
Seung-Hee Yoo, Shihoko Kojima, Kazuhiro Shimomura, Nobuya Koike, Ethan D Buhr, Tadashi Furukawa, Caroline H Ko, Gabrielle Gloston, Christopher Ayoub, Kazunari Nohara,[...]. Proc Natl Acad Sci U S A 2017
50
26

Genetic variants and abnormal processing of pre-miR-182, a circadian clock modulator, in major depression patients with late insomnia.
Ester Saus, Virginia Soria, Geòrgia Escaramís, Francesca Vivarelli, José M Crespo, Birgit Kagerbauer, José Manuel Menchón, Mikel Urretavizcaya, Mònica Gratacòs, Xavier Estivill. Hum Mol Genet 2010
119
13

A circadian gene expression atlas in mammals: implications for biology and medicine.
Ray Zhang, Nicholas F Lahens, Heather I Ballance, Michael E Hughes, John B Hogenesch. Proc Natl Acad Sci U S A 2014
13

Circadian regulation of a limited set of conserved microRNAs in Drosophila.
Maocheng Yang, Jung-Eun Lee, Richard W Padgett, Isaac Edery. BMC Genomics 2008
81
13

Integration of microRNA miR-122 in hepatic circadian gene expression.
David Gatfield, Gwendal Le Martelot, Charles E Vejnar, Daniel Gerlach, Olivier Schaad, Fabienne Fleury-Olela, Anna-Liisa Ruskeepää, Matej Oresic, Christine C Esau, Evgeny M Zdobnov,[...]. Genes Dev 2009
284
11

SIRT1 regulates circadian clock gene expression through PER2 deacetylation.
Gad Asher, David Gatfield, Markus Stratmann, Hans Reinke, Charna Dibner, Florian Kreppel, Raul Mostoslavsky, Frederick W Alt, Ueli Schibler. Cell 2008
917
11

Role of miR-142-3p in the post-transcriptional regulation of the clock gene Bmal1 in the mouse SCN.
Vikram R Shende, Nichole Neuendorff, David J Earnest. PLoS One 2013
33
33

An activity-regulated microRNA controls dendritic plasticity by down-regulating p250GAP.
Gary A Wayman, Monika Davare, Hideaki Ando, Dale Fortin, Olga Varlamova, Hai-Ying M Cheng, Daniel Marks, Karl Obrietan, Thomas R Soderling, Richard H Goodman,[...]. Proc Natl Acad Sci U S A 2008
428
11


The orphan nuclear receptor REV-ERBalpha controls circadian transcription within the positive limb of the mammalian circadian oscillator.
Nicolas Preitner, Francesca Damiola, Luis Lopez-Molina, Joszef Zakany, Denis Duboule, Urs Albrecht, Ueli Schibler. Cell 2002
11

Role of the CLOCK protein in the mammalian circadian mechanism.
N Gekakis, D Staknis, H B Nguyen, F C Davis, L D Wilsbacher, D P King, J S Takahashi, C J Weitz. Science 1998
11


Clock-controlled mir-142-3p can target its activator, Bmal1.
Xiaochao Tan, Peng Zhang, Lan Zhou, Bin Yin, Hui Pan, Xiaozhong Peng. BMC Mol Biol 2012
35
28

MicroRNA (miRNA) transcriptome of mouse retina and identification of a sensory organ-specific miRNA cluster.
Shunbin Xu, P Dane Witmer, Stephen Lumayag, Beatrix Kovacs, David Valle. J Biol Chem 2007
365
10


miRNA-132: a dynamic regulator of cognitive capacity.
Katelin F Hansen, Kate Karelina, Kensuke Sakamoto, Gary A Wayman, Soren Impey, Karl Obrietan. Brain Struct Funct 2013
101
10

Neuronal activity rapidly induces transcription of the CREB-regulated microRNA-132, in vivo.
Aaron S Nudelman, Derek P DiRocco, Talley J Lambert, Michael G Garelick, Josh Le, Neil M Nathanson, Daniel R Storm. Hippocampus 2010
235
10


Coordinated transcription of key pathways in the mouse by the circadian clock.
Satchidananda Panda, Marina P Antoch, Brooke H Miller, Andrew I Su, Andrew B Schook, Marty Straume, Peter G Schultz, Steve A Kay, Joseph S Takahashi, John B Hogenesch. Cell 2002
10

Molecular architecture of the mammalian circadian clock.
Carrie L Partch, Carla B Green, Joseph S Takahashi. Trends Cell Biol 2014
738
10

Circadian regulator CLOCK is a histone acetyltransferase.
Masao Doi, Jun Hirayama, Paolo Sassone-Corsi. Cell 2006
583
9

CLOCK-mediated acetylation of BMAL1 controls circadian function.
Jun Hirayama, Saurabh Sahar, Benedetto Grimaldi, Teruya Tamaru, Ken Takamatsu, Yasukazu Nakahata, Paolo Sassone-Corsi. Nature 2007
353
9

Rhythmic histone acetylation underlies transcription in the mammalian circadian clock.
Jean-Pierre Etchegaray, Choogon Lee, Paul A Wade, Steven M Reppert. Nature 2003
496
9

Regulation of Drosophila circadian rhythms by miRNA let-7 is mediated by a regulatory cycle.
Wenfeng Chen, Zhenxing Liu, Tianjiao Li, Ruifeng Zhang, Yongbo Xue, Yang Zhong, Weiwei Bai, Dasen Zhou, Zhangwu Zhao. Nat Commun 2014
59
15

The NAD+-dependent deacetylase SIRT1 modulates CLOCK-mediated chromatin remodeling and circadian control.
Yasukazu Nakahata, Milota Kaluzova, Benedetto Grimaldi, Saurabh Sahar, Jun Hirayama, Danica Chen, Leonard P Guarente, Paolo Sassone-Corsi. Cell 2008
952
9

A role for microRNAs in the Drosophila circadian clock.
Sebastian Kadener, Jerome S Menet, Ken Sugino, Michael D Horwich, Uri Weissbein, Pipat Nawathean, Vasia V Vagin, Phillip D Zamore, Sacha B Nelson, Michael Rosbash. Genes Dev 2009
118
9

MicroRNA-433 Dampens Glucocorticoid Receptor Signaling, Impacting Circadian Rhythm and Osteoblastic Gene Expression.
Spenser S Smith, Neha S Dole, Tiziana Franceschetti, Henry C Hrdlicka, Anne M Delany. J Biol Chem 2016
32
28

A cAMP-response element binding protein-induced microRNA regulates neuronal morphogenesis.
Ngan Vo, Matthew E Klein, Olga Varlamova, David M Keller, Tadashi Yamamoto, Richard H Goodman, Soren Impey. Proc Natl Acad Sci U S A 2005
644
9

Regulation of synaptic structure and function by FMRP-associated microRNAs miR-125b and miR-132.
Dieter Edbauer, Joel R Neilson, Kelly A Foster, Chi-Fong Wang, Daniel P Seeburg, Matthew N Batterton, Tomoko Tada, Bridget M Dolan, Phillip A Sharp, Morgan Sheng. Neuron 2010
549
9

microRNA-132 regulates dendritic growth and arborization of newborn neurons in the adult hippocampus.
Stephen T Magill, Xiaolu A Cambronne, Bryan W Luikart, Daniel T Lioy, Barbara H Leighton, Gary L Westbrook, Gail Mandel, Richard H Goodman. Proc Natl Acad Sci U S A 2010
311
9

Nascent-Seq reveals novel features of mouse circadian transcriptional regulation.
Jerome S Menet, Joseph Rodriguez, Katharine C Abruzzi, Michael Rosbash. Elife 2012
225
9

Circadian control of innate immunity in macrophages by miR-155 targeting Bmal1.
Anne M Curtis, Caio T Fagundes, Guangrui Yang, Eva M Palsson-McDermott, Paulina Wochal, Anne F McGettrick, Niamh H Foley, James O Early, Lihong Chen, Hanrui Zhang,[...]. Proc Natl Acad Sci U S A 2015
173
9


Rhythmic expression of miR-27b-3p targets the clock gene Bmal1 at the posttranscriptional level in the mouse liver.
Wenxiang Zhang, Peng Wang, Siyu Chen, Zhao Zhang, Tingming Liang, Chang Liu. FASEB J 2016
21
42

Circadian oscillations of protein-coding and regulatory RNAs in a highly dynamic mammalian liver epigenome.
Christopher Vollmers, Robert J Schmitz, Jason Nathanson, Gene Yeo, Joseph R Ecker, Satchidananda Panda. Cell Metab 2012
171
9

MicroRNA-185 oscillation controls circadian amplitude of mouse Cryptochrome 1 via translational regulation.
Kyung-Ha Lee, Sung-Hoon Kim, Hwa-Rim Lee, Wanil Kim, Do-Yeon Kim, Jae-Cheon Shin, Seung-Hee Yoo, Kyong-Tai Kim. Mol Biol Cell 2013
29
27

The oscillating miRNA 959-964 cluster impacts Drosophila feeding time and other circadian outputs.
Sadanand Vodala, Stefan Pescatore, Joseph Rodriguez, Marita Buescher, Ya-Wen Chen, Ruifen Weng, Stephen M Cohen, Michael Rosbash. Cell Metab 2012
37
21

miR-124 Regulates the Phase of Drosophila Circadian Locomotor Behavior.
Yong Zhang, Pallavi Lamba, Peiyi Guo, Patrick Emery. J Neurosci 2016
27
29

Comprehensive analysis of microRNA-mRNA co-expression in circadian rhythm.
Young Ji Na, Jung Hwan Sung, Suk Chan Lee, Young Ju Lee, Yeun Joo Choi, Woong Yang Park, Hee Sup Shin, Ju Han Kim. Exp Mol Med 2009
65
12

Transgenic miR132 alters neuronal spine density and impairs novel object recognition memory.
Katelin F Hansen, Kensuke Sakamoto, Gary A Wayman, Soren Impey, Karl Obrietan. PLoS One 2010
175
8

Mammalian circadian biology: elucidating genome-wide levels of temporal organization.
Phillip L Lowrey, Joseph S Takahashi. Annu Rev Genomics Hum Genet 2004
658
8

PERIOD2::LUCIFERASE real-time reporting of circadian dynamics reveals persistent circadian oscillations in mouse peripheral tissues.
Seung-Hee Yoo, Shin Yamazaki, Phillip L Lowrey, Kazuhiro Shimomura, Caroline H Ko, Ethan D Buhr, Sandra M Siepka, Hee-Kyung Hong, Won Jun Oh, Ook Joon Yoo,[...]. Proc Natl Acad Sci U S A 2004
8

Oscillating primary transcripts harbor miRNAs with circadian functions.
Haifang Wang, Zenghua Fan, Meng Zhao, Juan Li, Minghua Lu, Wei Liu, Hao Ying, Mofang Liu, Jun Yan. Sci Rep 2016
20
40


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.