A citation-based method for searching scientific literature

Chunyuan Jin, Gary Felsenfeld. Genes Dev 2007
Times Cited: 376







List of co-cited articles
1664 articles co-cited >1



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H3.3/H2A.Z double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions.
Chunyuan Jin, Chongzhi Zang, Gang Wei, Kairong Cui, Weiqun Peng, Keji Zhao, Gary Felsenfeld. Nat Genet 2009
548
48

Distinct factors control histone variant H3.3 localization at specific genomic regions.
Aaron D Goldberg, Laura A Banaszynski, Kyung-Min Noh, Peter W Lewis, Simon J Elsaesser, Sonja Stadler, Scott Dewell, Martin Law, Xingyi Guo, Xuan Li,[...]. Cell 2010
839
36

Crystal structure of the nucleosome core particle at 2.8 A resolution.
K Luger, A W Mäder, R K Richmond, D F Sargent, T J Richmond. Nature 1997
33

Histone H3.1 and H3.3 complexes mediate nucleosome assembly pathways dependent or independent of DNA synthesis.
Hideaki Tagami, Dominique Ray-Gallet, Geneviève Almouzni, Yoshihiro Nakatani. Cell 2004
932
25

Dynamics of histone H3 deposition in vivo reveal a nucleosome gap-filling mechanism for H3.3 to maintain chromatin integrity.
Dominique Ray-Gallet, Adam Woolfe, Isabelle Vassias, Céline Pellentz, Nicolas Lacoste, Aastha Puri, David C Schultz, Nikolay A Pchelintsev, Peter D Adams, Lars E T Jansen,[...]. Mol Cell 2011
255
20

H3.3 actively marks enhancers and primes gene transcription via opening higher-ordered chromatin.
Ping Chen, Jicheng Zhao, Yan Wang, Min Wang, Haizhen Long, Dan Liang, Li Huang, Zengqi Wen, Wei Li, Xia Li,[...]. Genes Dev 2013
134
20

Histone H3.3 is required for endogenous retroviral element silencing in embryonic stem cells.
Simon J Elsässer, Kyung-Min Noh, Nichole Diaz, C David Allis, Laura A Banaszynski. Nature 2015
212
18


Histone H2A.Z controls a critical chromatin remodeling step required for DNA double-strand break repair.
Ye Xu, Marina K Ayrapetov, Chang Xu, Ozge Gursoy-Yuzugullu, Yiduo Hu, Brendan D Price. Mol Cell 2012
210
18

High-resolution profiling of histone methylations in the human genome.
Artem Barski, Suresh Cuddapah, Kairong Cui, Tae-Young Roh, Dustin E Schones, Zhibin Wang, Gang Wei, Iouri Chepelev, Keji Zhao. Cell 2007
18

ANP32E is a histone chaperone that removes H2A.Z from chromatin.
Arnaud Obri, Khalid Ouararhni, Christophe Papin, Marie-Laure Diebold, Kiran Padmanabhan, Martin Marek, Isabelle Stoll, Ludovic Roy, Patrick T Reilly, Tak W Mak,[...]. Nature 2014
158
17

ATP-driven exchange of histone H2AZ variant catalyzed by SWR1 chromatin remodeling complex.
Gaku Mizuguchi, Xuetong Shen, Joe Landry, Wei-Hua Wu, Subhojit Sen, Carl Wu. Science 2004
924
17

The double face of the histone variant H3.3.
Emmanuelle Szenker, Dominique Ray-Gallet, Geneviève Almouzni. Cell Res 2011
247
16

Crystal structure of a nucleosome core particle containing the variant histone H2A.Z.
R K Suto, M J Clarkson, D J Tremethick, K Luger. Nat Struct Biol 2000
400
16

H2A.Z facilitates access of active and repressive complexes to chromatin in embryonic stem cell self-renewal and differentiation.
Gangqing Hu, Kairong Cui, Daniel Northrup, Chengyu Liu, Chaochen Wang, Qingsong Tang, Kai Ge, David Levens, Colyn Crane-Robinson, Keji Zhao. Cell Stem Cell 2013
208
16

Hira-dependent histone H3.3 deposition facilitates PRC2 recruitment at developmental loci in ES cells.
Laura A Banaszynski, Duancheng Wen, Scott Dewell, Sarah J Whitcomb, Mingyan Lin, Nichole Diaz, Simon J Elsässer, Ariane Chapgier, Aaron D Goldberg, Eli Canaani,[...]. Cell 2013
174
15



The death-associated protein DAXX is a novel histone chaperone involved in the replication-independent deposition of H3.3.
Pascal Drané, Khalid Ouararhni, Arnaud Depaux, Muhammad Shuaib, Ali Hamiche. Genes Dev 2010
448
14

Genome-scale profiling of histone H3.3 replacement patterns.
Yoshiko Mito, Jorja G Henikoff, Steven Henikoff. Nat Genet 2005
399
14

Histone variants--ancient wrap artists of the epigenome.
Paul B Talbert, Steven Henikoff. Nat Rev Mol Cell Biol 2010
534
14

Fast gapped-read alignment with Bowtie 2.
Ben Langmead, Steven L Salzberg. Nat Methods 2012
14

The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
13

Daxx is an H3.3-specific histone chaperone and cooperates with ATRX in replication-independent chromatin assembly at telomeres.
Peter W Lewis, Simon J Elsaesser, Kyung-Min Noh, Sonja C Stadler, C David Allis. Proc Natl Acad Sci U S A 2010
534
13

Nucleosomes are context-specific, H2A.Z-modulated barriers to RNA polymerase.
Christopher M Weber, Srinivas Ramachandran, Steven Henikoff. Mol Cell 2014
228
13

Histone variant H2A.Z is required for early mammalian development.
R Faast, V Thonglairoam, T C Schulz, J Beall, J R Wells, H Taylor, K Matthaei, P D Rathjen, D J Tremethick, I Lyons. Curr Biol 2001
271
13

Histone variants on the move: substrates for chromatin dynamics.
Paul B Talbert, Steven Henikoff. Nat Rev Mol Cell Biol 2017
179
13

Histone chaperone Anp32e removes H2A.Z from DNA double-strand breaks and promotes nucleosome reorganization and DNA repair.
Ozge Gursoy-Yuzugullu, Marina K Ayrapetov, Brendan D Price. Proc Natl Acad Sci U S A 2015
76
17

Histone exchange, chromatin structure and the regulation of transcription.
Swaminathan Venkatesh, Jerry L Workman. Nat Rev Mol Cell Biol 2015
546
12

Histone variant H2A.Z marks the 5' ends of both active and inactive genes in euchromatin.
Ryan M Raisner, Paul D Hartley, Marc D Meneghini, Marie Z Bao, Chih Long Liu, Stuart L Schreiber, Oliver J Rando, Hiten D Madhani. Cell 2005
489
12

Histone H3.3 maintains genome integrity during mammalian development.
Chuan-Wei Jang, Yoichiro Shibata, Joshua Starmer, Della Yee, Terry Magnuson. Genes Dev 2015
95
12

H2AZ is enriched at polycomb complex target genes in ES cells and is necessary for lineage commitment.
Menno P Creyghton, Styliani Markoulaki, Stuart S Levine, Jacob Hanna, Michael A Lodato, Ky Sha, Richard A Young, Rudolf Jaenisch, Laurie A Boyer. Cell 2008
251
12

The histone variant H2A.Z in gene regulation.
Benedetto Daniele Giaimo, Francesca Ferrante, Andreas Herchenröther, Sandra B Hake, Tilman Borggrefe. Epigenetics Chromatin 2019
103
12


Global regulation of H2A.Z localization by the INO80 chromatin-remodeling enzyme is essential for genome integrity.
Manolis Papamichos-Chronakis, Shinya Watanabe, Oliver J Rando, Craig L Peterson. Cell 2011
276
11

Acetylation of H2A.Z is a key epigenetic modification associated with gene deregulation and epigenetic remodeling in cancer.
Fátima Valdés-Mora, Jenny Z Song, Aaron L Statham, Dario Strbenac, Mark D Robinson, Shalima S Nair, Kate I Patterson, David J Tremethick, Clare Stirzaker, Susan J Clark. Genome Res 2012
125
11

Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks.
Daniel Zilberman, Devin Coleman-Derr, Tracy Ballinger, Steven Henikoff. Nature 2008
381
11

H2A.Z landscapes and dual modifications in pluripotent and multipotent stem cells underlie complex genome regulatory functions.
Manching Ku, Jacob D Jaffe, Richard P Koche, Esther Rheinbay, Mitsuhiro Endoh, Haruhiko Koseki, Steven A Carr, Bradley E Bernstein. Genome Biol 2012
122
11

Model-based analysis of ChIP-Seq (MACS).
Yong Zhang, Tao Liu, Clifford A Meyer, Jérôme Eeckhoute, David S Johnson, Bradley E Bernstein, Chad Nusbaum, Richard M Myers, Myles Brown, Wei Li,[...]. Genome Biol 2008
11


ATRX interacts with H3.3 in maintaining telomere structural integrity in pluripotent embryonic stem cells.
Lee H Wong, James D McGhie, Marcus Sim, Melissa A Anderson, Soyeon Ahn, Ross D Hannan, Amee J George, Kylie A Morgan, Jeffrey R Mann, K H Andy Choo. Genome Res 2010
276
10

Enhancer regions show high histone H3.3 turnover that changes during differentiation.
Aimee M Deaton, Mariluz Gómez-Rodríguez, Jakub Mieczkowski, Michael Y Tolstorukov, Sharmistha Kundu, Ruslan I Sadreyev, Lars Et Jansen, Robert E Kingston. Elife 2016
53
18

HIRA is critical for a nucleosome assembly pathway independent of DNA synthesis.
Dominique Ray-Gallet, Jean-Pierre Quivy, Christine Scamps, Emmanuelle M-D Martini, Marc Lipinski, Geneviève Almouzni. Mol Cell 2002
298
10

H2A.Z alters the nucleosome surface to promote HP1alpha-mediated chromatin fiber folding.
Jun Y Fan, Danny Rangasamy, Karolin Luger, David J Tremethick. Mol Cell 2004
215
10

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.
Ben Langmead, Cole Trapnell, Mihai Pop, Steven L Salzberg. Genome Biol 2009
9

High-resolution nucleosome mapping reveals transcription-dependent promoter packaging.
Assaf Weiner, Amanda Hughes, Moran Yassour, Oliver J Rando, Nir Friedman. Genome Res 2010
273
9

Driver mutations in histone H3.3 and chromatin remodelling genes in paediatric glioblastoma.
Jeremy Schwartzentruber, Andrey Korshunov, Xiao-Yang Liu, David T W Jones, Elke Pfaff, Karine Jacob, Dominik Sturm, Adam M Fontebasso, Dong-Anh Khuong Quang, Martje Tönjes,[...]. Nature 2012
9

ATRX Plays a Key Role in Maintaining Silencing at Interstitial Heterochromatic Loci and Imprinted Genes.
Hsiao P J Voon, Jim R Hughes, Christina Rode, Inti A De La Rosa-Velázquez, Thomas Jenuwein, Robert Feil, Douglas R Higgs, Richard J Gibbons. Cell Rep 2015
100
9

Transcriptional and developmental functions of the H3.3 histone variant in Drosophila.
Akiko Sakai, Brian E Schwartz, Sara Goldstein, Kami Ahmad. Curr Biol 2009
108
9

Distribution of histone H3.3 in hematopoietic cell lineages.
Chunyuan Jin, Gary Felsenfeld. Proc Natl Acad Sci U S A 2006
61
14


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.