A citation-based method for searching scientific literature

Serhiy Pankiv, Terje Høyvarde Clausen, Trond Lamark, Andreas Brech, Jack-Ansgar Bruun, Heidi Outzen, Aud Øvervatn, Geir Bjørkøy, Terje Johansen. J Biol Chem 2007
Times Cited: 2930







List of co-cited articles
708 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition).
Daniel J Klionsky, Kotb Abdelmohsen, Akihisa Abe, Md Joynal Abedin, Hagai Abeliovich, Abraham Acevedo Arozena, Hiroaki Adachi, Christopher M Adams, Peter D Adams, Khosrow Adeli,[...]. Autophagy 2016
18

p62/SQSTM1 forms protein aggregates degraded by autophagy and has a protective effect on huntingtin-induced cell death.
Geir Bjørkøy, Trond Lamark, Andreas Brech, Heidi Outzen, Maria Perander, Aud Overvatn, Harald Stenmark, Terje Johansen. J Cell Biol 2005
17

LC3, a mammalian homologue of yeast Apg8p, is localized in autophagosome membranes after processing.
Y Kabeya, N Mizushima, T Ueno, A Yamamoto, T Kirisako, T Noda, E Kominami, Y Ohsumi, T Yoshimori. EMBO J 2000
14

Autophagy: renovation of cells and tissues.
Noboru Mizushima, Masaaki Komatsu. Cell 2011
13

Autophagy fights disease through cellular self-digestion.
Noboru Mizushima, Beth Levine, Ana Maria Cuervo, Daniel J Klionsky. Nature 2008
11

Methods in mammalian autophagy research.
Noboru Mizushima, Tamotsu Yoshimori, Beth Levine. Cell 2010
11

Autophagy in the pathogenesis of disease.
Beth Levine, Guido Kroemer. Cell 2008
11

A role for NBR1 in autophagosomal degradation of ubiquitinated substrates.
Vladimir Kirkin, Trond Lamark, Yu-Shin Sou, Geir Bjørkøy, Jennifer L Nunn, Jack-Ansgar Bruun, Elena Shvets, David G McEwan, Terje H Clausen, Philipp Wild,[...]. Mol Cell 2009
756
10


Selective autophagy mediated by autophagic adapter proteins.
Terje Johansen, Trond Lamark. Autophagy 2011
9

LC3, GABARAP and GATE16 localize to autophagosomal membrane depending on form-II formation.
Yukiko Kabeya, Noboru Mizushima, Akitsugu Yamamoto, Satsuki Oshitani-Okamoto, Yoshinori Ohsumi, Tamotsu Yoshimori. J Cell Sci 2004
8


AMPK and mTOR regulate autophagy through direct phosphorylation of Ulk1.
Joungmok Kim, Mondira Kundu, Benoit Viollet, Kun-Liang Guan. Nat Cell Biol 2011
8

Mechanism and medical implications of mammalian autophagy.
Ivan Dikic, Zvulun Elazar. Nat Rev Mol Cell Biol 2018
893
8

Structural basis for sorting mechanism of p62 in selective autophagy.
Yoshinobu Ichimura, Taichi Kumanomidou, Yu-shin Sou, Tsunehiro Mizushima, Junji Ezaki, Takashi Ueno, Eiki Kominami, Takashi Yamane, Keiji Tanaka, Masaaki Komatsu. J Biol Chem 2008
535
8

Guidelines for the use and interpretation of assays for monitoring autophagy.
Daniel J Klionsky, Fabio C Abdalla, Hagai Abeliovich, Robert T Abraham, Abraham Acevedo-Arozena, Khosrow Adeli, Lotta Agholme, Maria Agnello, Patrizia Agostinis, Julio A Aguirre-Ghiso,[...]. Autophagy 2012
8

Phosphorylation of the autophagy receptor optineurin restricts Salmonella growth.
Philipp Wild, Hesso Farhan, David G McEwan, Sebastian Wagner, Vladimir V Rogov, Nathan R Brady, Benjamin Richter, Jelena Korac, Oliver Waidmann, Chunaram Choudhary,[...]. Science 2011
838
7

Mitochondrial outer-membrane protein FUNDC1 mediates hypoxia-induced mitophagy in mammalian cells.
Lei Liu, Du Feng, Guo Chen, Ming Chen, Qiaoxia Zheng, Pingping Song, Qi Ma, Chongzhuo Zhu, Rui Wang, Wanjun Qi,[...]. Nat Cell Biol 2012
788
7

Cargo recognition and trafficking in selective autophagy.
Alexandra Stolz, Andreas Ernst, Ivan Dikic. Nat Cell Biol 2014
691
7

TFEB links autophagy to lysosomal biogenesis.
Carmine Settembre, Chiara Di Malta, Vinicia Assunta Polito, Moises Garcia Arencibia, Francesco Vetrini, Serkan Erdin, Serpil Uckac Erdin, Tuong Huynh, Diego Medina, Pasqualina Colella,[...]. Science 2011
7

Inhibition of mTOR induces autophagy and reduces toxicity of polyglutamine expansions in fly and mouse models of Huntington disease.
Brinda Ravikumar, Coralie Vacher, Zdenek Berger, Janet E Davies, Shouqing Luo, Lourdes G Oroz, Francesco Scaravilli, Douglas F Easton, Rainer Duden, Cahir J O'Kane,[...]. Nat Genet 2004
7

Impairment of starvation-induced and constitutive autophagy in Atg7-deficient mice.
Masaaki Komatsu, Satoshi Waguri, Takashi Ueno, Junichi Iwata, Shigeo Murata, Isei Tanida, Junji Ezaki, Noboru Mizushima, Yoshinori Ohsumi, Yasuo Uchiyama,[...]. J Cell Biol 2005
7

The role of Atg proteins in autophagosome formation.
Noboru Mizushima, Tamotsu Yoshimori, Yoshinori Ohsumi. Annu Rev Cell Dev Biol 2011
7

Molecular definitions of autophagy and related processes.
Lorenzo Galluzzi, Eric H Baehrecke, Andrea Ballabio, Patricia Boya, José Manuel Bravo-San Pedro, Francesco Cecconi, Augustine M Choi, Charleen T Chu, Patrice Codogno, Maria Isabel Colombo,[...]. EMBO J 2017
732
7

An overview of autophagy: morphology, mechanism, and regulation.
Katherine R Parzych, Daniel J Klionsky. Antioxid Redox Signal 2014
818
7

Nix is a selective autophagy receptor for mitochondrial clearance.
Ivana Novak, Vladimir Kirkin, David G McEwan, Ji Zhang, Philipp Wild, Alexis Rozenknop, Vladimir Rogov, Frank Löhr, Doris Popovic, Angelo Occhipinti,[...]. EMBO Rep 2010
781
6

Atg8 family LC3/GABARAP proteins are crucial for autophagosome-lysosome fusion but not autophagosome formation during PINK1/Parkin mitophagy and starvation.
Thanh Ngoc Nguyen, Benjamin Scott Padman, Joanne Usher, Viola Oorschot, Georg Ramm, Michael Lazarou. J Cell Biol 2016
286
6

Autophagy in immunity and inflammation.
Beth Levine, Noboru Mizushima, Herbert W Virgin. Nature 2011
6



Monitoring and Measuring Autophagy.
Saori R Yoshii, Noboru Mizushima. Int J Mol Sci 2017
416
6

Autophagy pathway: Cellular and molecular mechanisms.
Li Yu, Yang Chen, Sharon A Tooze. Autophagy 2018
484
6

The autophagy-related protein beclin 1 shows reduced expression in early Alzheimer disease and regulates amyloid beta accumulation in mice.
Fiona Pickford, Eliezer Masliah, Markus Britschgi, Kurt Lucin, Ramya Narasimhan, Philipp A Jaeger, Scott Small, Brian Spencer, Edward Rockenstein, Beth Levine,[...]. J Clin Invest 2008
749
6

Autophagy: cellular and molecular mechanisms.
Danielle Glick, Sandra Barth, Kay F Macleod. J Pathol 2010
6


ULK1 induces autophagy by phosphorylating Beclin-1 and activating VPS34 lipid kinase.
Ryan C Russell, Ye Tian, Haixin Yuan, Hyun Woo Park, Yu-Yun Chang, Joungmok Kim, Haerin Kim, Thomas P Neufeld, Andrew Dillin, Kun-Liang Guan. Nat Cell Biol 2013
882
6

Nutrient-dependent mTORC1 association with the ULK1-Atg13-FIP200 complex required for autophagy.
Nao Hosokawa, Taichi Hara, Takeshi Kaizuka, Chieko Kishi, Akito Takamura, Yutaka Miura, Shun-ichiro Iemura, Tohru Natsume, Kenji Takehana, Naoyuki Yamada,[...]. Mol Biol Cell 2009
6

Autophagy: process and function.
Noboru Mizushima. Genes Dev 2007
6

Selective turnover of p62/A170/SQSTM1 by autophagy.
Yoshinobu Ichimura, Eiki Kominami, Keiji Tanaka, Masaaki Komatsu. Autophagy 2008
170
6

Autophagy suppresses tumorigenesis through elimination of p62.
Robin Mathew, Cristina M Karp, Brian Beaudoin, Nhan Vuong, Guanghua Chen, Hsin-Yi Chen, Kevin Bray, Anupama Reddy, Gyan Bhanot, Celine Gelinas,[...]. Cell 2009
6

Oligomerization of p62 allows for selection of ubiquitinated cargo and isolation membrane during selective autophagy.
Bettina Wurzer, Gabriele Zaffagnini, Dorotea Fracchiolla, Eleonora Turco, Christine Abert, Julia Romanov, Sascha Martens. Elife 2015
133
6


Aggrephagy: selective disposal of protein aggregates by macroautophagy.
Trond Lamark, Terje Johansen. Int J Cell Biol 2012
244
5

The LIR motif - crucial for selective autophagy.
Åsa Birna Birgisdottir, Trond Lamark, Terje Johansen. J Cell Sci 2013
465
5

LC3 and GATE-16/GABARAP subfamilies are both essential yet act differently in autophagosome biogenesis.
Hilla Weidberg, Elena Shvets, Tomer Shpilka, Frida Shimron, Vera Shinder, Zvulun Elazar. EMBO J 2010
450
5

Homeostatic levels of p62 control cytoplasmic inclusion body formation in autophagy-deficient mice.
Masaaki Komatsu, Satoshi Waguri, Masato Koike, Yu-Shin Sou, Takashi Ueno, Taichi Hara, Noboru Mizushima, Jun-Ichi Iwata, Junji Ezaki, Shigeo Murata,[...]. Cell 2007
5

The role of autophagy during the early neonatal starvation period.
Akiko Kuma, Masahiko Hatano, Makoto Matsui, Akitsugu Yamamoto, Haruaki Nakaya, Tamotsu Yoshimori, Yoshinori Ohsumi, Takeshi Tokuhisa, Noboru Mizushima. Nature 2004
5


Regulation of selective autophagy: the p62/SQSTM1 paradigm.
Trond Lamark, Steingrim Svenning, Terje Johansen. Essays Biochem 2017
214
5

Crosstalk Between Mammalian Autophagy and the Ubiquitin-Proteasome System.
Nur Mehpare Kocaturk, Devrim Gozuacik. Front Cell Dev Biol 2018
117
5


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.