A citation-based method for searching scientific literature

Steen K T Ooi, Chen Qiu, Emily Bernstein, Keqin Li, Da Jia, Zhe Yang, Hediye Erdjument-Bromage, Paul Tempst, Shau-Ping Lin, C David Allis, Xiaodong Cheng, Timothy H Bestor. Nature 2007
Times Cited: 955







List of co-cited articles
1235 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Structural basis for recognition of H3K4 methylation status by the DNA methyltransferase 3A ATRX-DNMT3-DNMT3L domain.
Junji Otani, Toshiyuki Nankumo, Kyohei Arita, Susumu Inamoto, Mariko Ariyoshi, Masahiro Shirakawa. EMBO Rep 2009
234
29

Structural insight into autoinhibition and histone H3-induced activation of DNMT3A.
Xue Guo, Ling Wang, Jie Li, Zhanyu Ding, Jianxiong Xiao, Xiaotong Yin, Shuang He, Pan Shi, Liping Dong, Guohong Li,[...]. Nature 2015
178
28


Chromatin methylation activity of Dnmt3a and Dnmt3a/3L is guided by interaction of the ADD domain with the histone H3 tail.
Yingying Zhang, Renata Jurkowska, Szabolcs Soeroes, Arumugam Rajavelu, Arunkumar Dhayalan, Ina Bock, Philipp Rathert, Ole Brandt, Richard Reinhardt, Wolfgang Fischle,[...]. Nucleic Acids Res 2010
221
20

The histone mark H3K36me2 recruits DNMT3A and shapes the intergenic DNA methylation landscape.
Daniel N Weinberg, Simon Papillon-Cavanagh, Haifen Chen, Yuan Yue, Xiao Chen, Kartik N Rajagopalan, Cynthia Horth, John T McGuire, Xinjing Xu, Hamid Nikbakht,[...]. Nature 2019
114
19

Dnmt3L and the establishment of maternal genomic imprints.
D Bourc'his, G L Xu, C S Lin, B Bollman, T H Bestor. Science 2001
909
18

Genomic profiling of DNA methyltransferases reveals a role for DNMT3B in genic methylation.
Tuncay Baubec, Daniele F Colombo, Christiane Wirbelauer, Juliane Schmidt, Lukas Burger, Arnaud R Krebs, Altuna Akalin, Dirk Schübeler. Nature 2015
341
18

Structure of Dnmt3a bound to Dnmt3L suggests a model for de novo DNA methylation.
Da Jia, Renata Z Jurkowska, Xing Zhang, Albert Jeltsch, Xiaodong Cheng. Nature 2007
516
17

The Dnmt3a PWWP domain reads histone 3 lysine 36 trimethylation and guides DNA methylation.
Arunkumar Dhayalan, Arumugam Rajavelu, Philipp Rathert, Raluca Tamas, Renata Z Jurkowska, Sergey Ragozin, Albert Jeltsch. J Biol Chem 2010
316
16

Structural basis for DNMT3A-mediated de novo DNA methylation.
Zhi-Min Zhang, Rui Lu, Pengcheng Wang, Yang Yu, Dongliang Chen, Linfeng Gao, Shuo Liu, Debin Ji, Scott B Rothbart, Yinsheng Wang,[...]. Nature 2018
90
16

The diverse roles of DNA methylation in mammalian development and disease.
Maxim V C Greenberg, Deborah Bourc'his. Nat Rev Mol Cell Biol 2019
398
15

Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome.
Nathaniel D Heintzman, Rhona K Stuart, Gary Hon, Yutao Fu, Christina W Ching, R David Hawkins, Leah O Barrera, Sara Van Calcar, Chunxu Qu, Keith A Ching,[...]. Nat Genet 2007
14

Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome.
Michael Weber, Ines Hellmann, Michael B Stadler, Liliana Ramos, Svante Pääbo, Michael Rebhan, Dirk Schübeler. Nat Genet 2007
13


Essential role for de novo DNA methyltransferase Dnmt3a in paternal and maternal imprinting.
Masahiro Kaneda, Masaki Okano, Kenichiro Hata, Takashi Sado, Naomi Tsujimoto, En Li, Hiroyuki Sasaki. Nature 2004
874
12

A bivalent chromatin structure marks key developmental genes in embryonic stem cells.
Bradley E Bernstein, Tarjei S Mikkelsen, Xiaohui Xie, Michael Kamal, Dana J Huebert, James Cuff, Ben Fry, Alex Meissner, Marius Wernig, Kathrin Plath,[...]. Cell 2006
12


In vivo targeting of de novo DNA methylation by histone modifications in yeast and mouse.
Marco Morselli, William A Pastor, Barbara Montanini, Kevin Nee, Roberto Ferrari, Kai Fu, Giancarlo Bonora, Liudmilla Rubbi, Amander T Clark, Simone Ottonello,[...]. Elife 2015
96
11

DNA methylation: roles in mammalian development.
Zachary D Smith, Alexander Meissner. Nat Rev Genet 2013
11

SETD2 regulates the maternal epigenome, genomic imprinting and embryonic development.
Qianhua Xu, Yunlong Xiang, Qiujun Wang, Leyun Wang, Julie Brind'Amour, Aaron Blair Bogutz, Yu Zhang, Bingjie Zhang, Guang Yu, Weikun Xia,[...]. Nat Genet 2019
73
15

UHRF1 plays a role in maintaining DNA methylation in mammalian cells.
Magnolia Bostick, Jong Kyong Kim, Pierre-Olivier Estève, Amander Clark, Sriharsa Pradhan, Steven E Jacobsen. Science 2007
828
11

DNA-binding factors shape the mouse methylome at distal regulatory regions.
Michael B Stadler, Rabih Murr, Lukas Burger, Robert Ivanek, Florian Lienert, Anne Schöler, Erik van Nimwegen, Christiane Wirbelauer, Edward J Oakeley, Dimos Gaidatzis,[...]. Nature 2011
865
11

Human DNA methylomes at base resolution show widespread epigenomic differences.
Ryan Lister, Mattia Pelizzola, Robert H Dowen, R David Hawkins, Gary Hon, Julian Tonti-Filippini, Joseph R Nery, Leonard Lee, Zhen Ye, Que-Minh Ngo,[...]. Nature 2009
11

Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine.
Shinsuke Ito, Li Shen, Qing Dai, Susan C Wu, Leonard B Collins, James A Swenberg, Chuan He, Yi Zhang. Science 2011
11

Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1.
Mamta Tahiliani, Kian Peng Koh, Yinghua Shen, William A Pastor, Hozefa Bandukwala, Yevgeny Brudno, Suneet Agarwal, Lakshminarayan M Iyer, David R Liu, L Aravind,[...]. Science 2009
11


Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities.
Sven Heinz, Christopher Benner, Nathanael Spann, Eric Bertolino, Yin C Lin, Peter Laslo, Jason X Cheng, Cornelis Murre, Harinder Singh, Christopher K Glass. Mol Cell 2010
10

Genome-wide maps of chromatin state in pluripotent and lineage-committed cells.
Tarjei S Mikkelsen, Manching Ku, David B Jaffe, Biju Issac, Erez Lieberman, Georgia Giannoukos, Pablo Alvarez, William Brockman, Tae-Kyung Kim, Richard P Koche,[...]. Nature 2007
10

Histone tails regulate DNA methylation by allosterically activating de novo methyltransferase.
Bin-Zhong Li, Zheng Huang, Qing-Yan Cui, Xue-Hui Song, Lin Du, Albert Jeltsch, Ping Chen, Guohong Li, En Li, Guo-Liang Xu. Cell Res 2011
78
12

Intragenic DNA methylation prevents spurious transcription initiation.
Francesco Neri, Stefania Rapelli, Anna Krepelova, Danny Incarnato, Caterina Parlato, Giulia Basile, Mara Maldotti, Francesca Anselmi, Salvatore Oliviero. Nature 2017
278
10

Allelic reprogramming of the histone modification H3K4me3 in early mammalian development.
Bingjie Zhang, Hui Zheng, Bo Huang, Wenzhi Li, Yunlong Xiang, Xu Peng, Jia Ming, Xiaotong Wu, Yu Zhang, Qianhua Xu,[...]. Nature 2016
271
10

Association of UHRF1 with methylated H3K9 directs the maintenance of DNA methylation.
Scott B Rothbart, Krzysztof Krajewski, Nataliya Nady, Wolfram Tempel, Sheng Xue, Aimee I Badeaux, Dalia Barsyte-Lovejoy, Jorge Y Martinez, Mark T Bedford, Stephen M Fuchs,[...]. Nat Struct Mol Biol 2012
217
10

CpG islands and the regulation of transcription.
Aimée M Deaton, Adrian Bird. Genes Dev 2011
10

The dynamics of genome-wide DNA methylation reprogramming in mouse primordial germ cells.
Stefanie Seisenberger, Simon Andrews, Felix Krueger, Julia Arand, Jörn Walter, Fátima Santos, Christian Popp, Bernard Thienpont, Wendy Dean, Wolf Reik. Mol Cell 2012
553
10

The DNA methyltransferase-like protein DNMT3L stimulates de novo methylation by Dnmt3a.
Frederic Chedin, Michael R Lieber, Chih-Lin Hsieh. Proc Natl Acad Sci U S A 2002
328
10


High-resolution profiling of histone methylations in the human genome.
Artem Barski, Suresh Cuddapah, Kairong Cui, Tae-Young Roh, Dustin E Schones, Zhibin Wang, Gang Wei, Iouri Chepelev, Keji Zhao. Cell 2007
10


Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA.
Yu-Fei He, Bin-Zhong Li, Zheng Li, Peng Liu, Yang Wang, Qingyu Tang, Jianping Ding, Yingying Jia, Zhangcheng Chen, Lin Li,[...]. Science 2011
10

The lysine demethylase LSD1 (KDM1) is required for maintenance of global DNA methylation.
Jing Wang, Sarah Hevi, Julia K Kurash, Hong Lei, Frédérique Gay, Jeffrey Bajko, Hui Su, Weitao Sun, Hua Chang, Guoliang Xu,[...]. Nat Genet 2009
526
9

Sequential ChIP-bisulfite sequencing enables direct genome-scale investigation of chromatin and DNA methylation cross-talk.
Arie B Brinkman, Hongcang Gu, Stefanie J J Bartels, Yingying Zhang, Filomena Matarese, Femke Simmer, Hendrik Marks, Christoph Bock, Andreas Gnirke, Alexander Meissner,[...]. Genome Res 2012
238
9

Histone H3K27ac separates active from poised enhancers and predicts developmental state.
Menno P Creyghton, Albert W Cheng, G Grant Welstead, Tristan Kooistra, Bryce W Carey, Eveline J Steine, Jacob Hanna, Michael A Lodato, Garrett M Frampton, Phillip A Sharp,[...]. Proc Natl Acad Sci U S A 2010
9



Dynamic changes in histone modifications precede de novo DNA methylation in oocytes.
Kathleen R Stewart, Lenka Veselovska, Jeesun Kim, Jiahao Huang, Heba Saadeh, Shin-ichi Tomizawa, Sébastien A Smallwood, Taiping Chen, Gavin Kelsey. Genes Dev 2015
104
9


A DNMT3A PWWP mutation leads to methylation of bivalent chromatin and growth retardation in mice.
Gintarė Sendžikaitė, Courtney W Hanna, Kathleen R Stewart-Morgan, Elena Ivanova, Gavin Kelsey. Nat Commun 2019
36
25

Isoform-specific localization of DNMT3A regulates DNA methylation fidelity at bivalent CpG islands.
Massimiliano Manzo, Joël Wirz, Christina Ambrosi, Rodrigo Villaseñor, Bernd Roschitzki, Tuncay Baubec. EMBO J 2017
53
16

Stella safeguards the oocyte methylome by preventing de novo methylation mediated by DNMT1.
Yingfeng Li, Zhuqiang Zhang, Jiayu Chen, Wenqiang Liu, Weiyi Lai, Baodong Liu, Xiang Li, Liping Liu, Shaohua Xu, Qiang Dong,[...]. Nature 2018
82
10

Gain-of-function DNMT3A mutations cause microcephalic dwarfism and hypermethylation of Polycomb-regulated regions.
Patricia Heyn, Clare V Logan, Adeline Fluteau, Rachel C Challis, Tatsiana Auchynnikava, Carol-Anne Martin, Joseph A Marsh, Francesca Taglini, Fiona Kilanowski, David A Parry,[...]. Nat Genet 2019
50
18


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.