A citation-based method for searching scientific literature

Daniel A Dombeck, Anton N Khabbaz, Forrest Collman, Thomas L Adelman, David W Tank. Neuron 2007
Times Cited: 653







List of co-cited articles
1037 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Ultrasensitive fluorescent proteins for imaging neuronal activity.
Tsai-Wen Chen, Trevor J Wardill, Yi Sun, Stefan R Pulver, Sabine L Renninger, Amy Baohan, Eric R Schreiter, Rex A Kerr, Michael B Orger, Vivek Jayaraman,[...]. Nature 2013
38

Functional imaging of hippocampal place cells at cellular resolution during virtual navigation.
Daniel A Dombeck, Christopher D Harvey, Lin Tian, Loren L Looger, David W Tank. Nat Neurosci 2010
430
19

Simultaneous Denoising, Deconvolution, and Demixing of Calcium Imaging Data.
Eftychios A Pnevmatikakis, Daniel Soudry, Yuanjun Gao, Timothy A Machado, Josh Merel, David Pfau, Thomas Reardon, Yu Mu, Clay Lacefield, Weijian Yang,[...]. Neuron 2016
394
16

NoRMCorre: An online algorithm for piecewise rigid motion correction of calcium imaging data.
Eftychios A Pnevmatikakis, Andrea Giovannucci. J Neurosci Methods 2017
234
15

CaImAn an open source tool for scalable calcium imaging data analysis.
Andrea Giovannucci, Johannes Friedrich, Pat Gunn, Jérémie Kalfon, Brandon L Brown, Sue Ann Koay, Jiannis Taxidis, Farzaneh Najafi, Jeffrey L Gauthier, Pengcheng Zhou,[...]. Elife 2019
184
15


Intracellular dynamics of hippocampal place cells during virtual navigation.
Christopher D Harvey, Forrest Collman, Daniel A Dombeck, David W Tank. Nature 2009
532
14

Two-photon laser scanning fluorescence microscopy.
W Denk, J H Strickler, W W Webb. Science 1990
13

Long-term, high-resolution imaging in the mouse neocortex through a chronic cranial window.
Anthony Holtmaat, Tobias Bonhoeffer, David K Chow, Jyoti Chuckowree, Vincenzo De Paola, Sonja B Hofer, Mark Hübener, Tara Keck, Graham Knott, Wei-Chung A Lee,[...]. Nat Protoc 2009
603
13

Automated analysis of cellular signals from large-scale calcium imaging data.
Eran A Mukamel, Axel Nimmerjahn, Mark J Schnitzer. Neuron 2009
375
12

DeepLabCut: markerless pose estimation of user-defined body parts with deep learning.
Alexander Mathis, Pranav Mamidanna, Kevin M Cury, Taiga Abe, Venkatesh N Murthy, Mackenzie Weygandt Mathis, Matthias Bethge. Nat Neurosci 2018
766
12

Single-trial neural dynamics are dominated by richly varied movements.
Simon Musall, Matthew T Kaufman, Ashley L Juavinett, Steven Gluf, Anne K Churchland. Nat Neurosci 2019
232
11

Deep tissue two-photon microscopy.
Fritjof Helmchen, Winfried Denk. Nat Methods 2005
11

Spontaneous behaviors drive multidimensional, brainwide activity.
Carsen Stringer, Marius Pachitariu, Nicholas Steinmetz, Charu Bai Reddy, Matteo Carandini, Kenneth D Harris. Science 2019
337
11

Benchmarking Spike Rate Inference in Population Calcium Imaging.
Lucas Theis, Philipp Berens, Emmanouil Froudarakis, Jacob Reimer, Miroslav Román Rosón, Tom Baden, Thomas Euler, Andreas S Tolias, Matthias Bethge. Neuron 2016
85
11


High-performance calcium sensors for imaging activity in neuronal populations and microcompartments.
Hod Dana, Yi Sun, Boaz Mohar, Brad K Hulse, Aaron M Kerlin, Jeremy P Hasseman, Getahun Tsegaye, Arthur Tsang, Allan Wong, Ronak Patel,[...]. Nat Methods 2019
321
10

Sensitive red protein calcium indicators for imaging neural activity.
Hod Dana, Boaz Mohar, Yi Sun, Sujatha Narayan, Andrew Gordus, Jeremy P Hasseman, Getahun Tsegaye, Graham T Holt, Amy Hu, Deepika Walpita,[...]. Elife 2016
439
10

Sensorimotor mismatch signals in primary visual cortex of the behaving mouse.
Georg B Keller, Tobias Bonhoeffer, Mark Hübener. Neuron 2012
278
10

Arousal and locomotion make distinct contributions to cortical activity patterns and visual encoding.
Martin Vinck, Renata Batista-Brito, Ulf Knoblich, Jessica A Cardin. Neuron 2015
340
10

Fast nonnegative deconvolution for spike train inference from population calcium imaging.
Joshua T Vogelstein, Adam M Packer, Timothy A Machado, Tanya Sippy, Baktash Babadi, Rafael Yuste, Liam Paninski. J Neurophysiol 2010
225
9

Fast online deconvolution of calcium imaging data.
Johannes Friedrich, Pengcheng Zhou, Liam Paninski. PLoS Comput Biol 2017
143
9

Accurate spike estimation from noisy calcium signals for ultrafast three-dimensional imaging of large neuronal populations in vivo.
Thomas Deneux, Attila Kaszas, Gergely Szalay, Gergely Katona, Tamás Lakner, Amiram Grinvald, Balázs Rózsa, Ivo Vanzetta. Nat Commun 2016
90
10

Highly selective receptive fields in mouse visual cortex.
Cristopher M Niell, Michael P Stryker. J Neurosci 2008
628
9

Long-term dynamics of CA1 hippocampal place codes.
Yaniv Ziv, Laurie D Burns, Eric D Cocker, Elizabeth O Hamel, Kunal K Ghosh, Lacey J Kitch, Abbas El Gamal, Mark J Schnitzer. Nat Neurosci 2013
506
9

SIMA: Python software for analysis of dynamic fluorescence imaging data.
Patrick Kaifosh, Jeffrey D Zaremba, Nathan B Danielson, Attila Losonczy. Front Neuroinform 2014
99
9

Fast high-resolution miniature two-photon microscopy for brain imaging in freely behaving mice.
Weijian Zong, Runlong Wu, Mingli Li, Yanhui Hu, Yijun Li, Jinghang Li, Hao Rong, Haitao Wu, Yangyang Xu, Yang Lu,[...]. Nat Methods 2017
177
9

ScanImage: flexible software for operating laser scanning microscopes.
Thomas A Pologruto, Bernardo L Sabatini, Karel Svoboda. Biomed Eng Online 2003
754
9

Transient Opening of the Mitochondrial Permeability Transition Pore Induces Microdomain Calcium Transients in Astrocyte Processes.
Amit Agarwal, Pei-Hsun Wu, Ethan G Hughes, Masahiro Fukaya, Max A Tischfield, Abraham J Langseth, Denis Wirtz, Dwight E Bergles. Neuron 2017
214
9

A Cellular Resolution Map of Barrel Cortex Activity during Tactile Behavior.
Simon P Peron, Jeremy Freeman, Vijay Iyer, Caiying Guo, Karel Svoboda. Neuron 2015
156
9

Imaging calcium in neurons.
Christine Grienberger, Arthur Konnerth. Neuron 2012
647
9


Cortical Circuit Activity Evokes Rapid Astrocyte Calcium Signals on a Similar Timescale to Neurons.
Jillian L Stobart, Kim David Ferrari, Matthew J P Barrett, Chaim Glück, Michael J Stobart, Marc Zuend, Bruno Weber. Neuron 2018
97
8

Efficient subpixel image registration algorithms.
Manuel Guizar-Sicairos, Samuel T Thurman, James R Fienup. Opt Lett 2008
642
8

Ca(2+) signaling in astrocytes from Ip3r2(-/-) mice in brain slices and during startle responses in vivo.
Rahul Srinivasan, Ben S Huang, Sharmila Venugopal, April D Johnston, Hua Chai, Hongkui Zeng, Peyman Golshani, Baljit S Khakh. Nat Neurosci 2015
267
8

Cellular mechanisms of brain state-dependent gain modulation in visual cortex.
Pierre-Olivier Polack, Jonathan Friedman, Peyman Golshani. Nat Neurosci 2013
348
8

Integration of visual motion and locomotion in mouse visual cortex.
Aman B Saleem, Aslı Ayaz, Kathryn J Jeffery, Kenneth D Harris, Matteo Carandini. Nat Neurosci 2013
204
8

Increased Prevalence of Calcium Transients across the Dendritic Arbor during Place Field Formation.
Mark E J Sheffield, Michael D Adoff, Daniel A Dombeck. Neuron 2017
68
11

Procedures for behavioral experiments in head-fixed mice.
Zengcai V Guo, S Andrew Hires, Nuo Li, Daniel H O'Connor, Takaki Komiyama, Eran Ophir, Daniel Huber, Claudia Bonardi, Karin Morandell, Diego Gutnisky,[...]. PLoS One 2014
177
8

Norepinephrine controls astroglial responsiveness to local circuit activity.
Martin Paukert, Amit Agarwal, Jaepyeong Cha, Van A Doze, Jin U Kang, Dwight E Bergles. Neuron 2014
293
8

Whole-brain functional imaging at cellular resolution using light-sheet microscopy.
Misha B Ahrens, Michael B Orger, Drew N Robson, Jennifer M Li, Philipp J Keller. Nat Methods 2013
660
7

An optimized fluorescent probe for visualizing glutamate neurotransmission.
Jonathan S Marvin, Bart G Borghuis, Lin Tian, Joseph Cichon, Mark T Harnett, Jasper Akerboom, Andrew Gordus, Sabine L Renninger, Tsai-Wen Chen, Cornelia I Bargmann,[...]. Nat Methods 2013
515
7

Broadly tuned response properties of diverse inhibitory neuron subtypes in mouse visual cortex.
Aaron M Kerlin, Mark L Andermann, Vladimir K Berezovskii, R Clay Reid. Neuron 2010
371
7

Three-dimensional Ca2+ imaging advances understanding of astrocyte biology.
Erika Bindocci, Iaroslav Savtchouk, Nicolas Liaudet, Denise Becker, Giovanni Carriero, Andrea Volterra. Science 2017
146
7

Fiji: an open-source platform for biological-image analysis.
Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid,[...]. Nat Methods 2012
7

Vision and Locomotion Shape the Interactions between Neuron Types in Mouse Visual Cortex.
Mario Dipoppa, Adam Ranson, Michael Krumin, Marius Pachitariu, Matteo Carandini, Kenneth D Harris. Neuron 2018
107
7

Pupil fluctuations track fast switching of cortical states during quiet wakefulness.
Jacob Reimer, Emmanouil Froudarakis, Cathryn R Cadwell, Dimitri Yatsenko, George H Denfield, Andreas S Tolias. Neuron 2014
318
7

Astrocytes Integrate Behavioral State and Vascular Signals during Functional Hyperemia.
Cam Ha T Tran, Govind Peringod, Grant R Gordon. Neuron 2018
45
15

Thy1-GCaMP6 transgenic mice for neuronal population imaging in vivo.
Hod Dana, Tsai-Wen Chen, Amy Hu, Brenda C Shields, Caiying Guo, Loren L Looger, Douglas S Kim, Karel Svoboda. PLoS One 2014
255
7

Volumetric Ca2+ Imaging in the Mouse Brain Using Hybrid Multiplexed Sculpted Light Microscopy.
Siegfried Weisenburger, Frank Tejera, Jeffrey Demas, Brandon Chen, Jason Manley, Fraser T Sparks, Francisca Martínez Traub, Tanya Daigle, Hongkui Zeng, Attila Losonczy,[...]. Cell 2019
67
10


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.