A citation-based method for searching scientific literature

Jean Livet, Tamily A Weissman, Hyuno Kang, Ryan W Draft, Ju Lu, Robyn A Bennis, Joshua R Sanes, Jeff W Lichtman. Nature 2007
Times Cited: 1094







List of co-cited articles
876 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Intestinal crypt homeostasis results from neutral competition between symmetrically dividing Lgr5 stem cells.
Hugo J Snippert, Laurens G van der Flier, Toshiro Sato, Johan H van Es, Maaike van den Born, Carla Kroon-Veenboer, Nick Barker, Allon M Klein, Jacco van Rheenen, Benjamin D Simons,[...]. Cell 2010
27

Improved tools for the Brainbow toolbox.
Dawen Cai, Kimberly B Cohen, Tuanlian Luo, Jeff W Lichtman, Joshua R Sanes. Nat Methods 2013
226
19

Polylox barcoding reveals haematopoietic stem cell fates realized in vivo.
Weike Pei, Thorsten B Feyerabend, Jens Rössler, Xi Wang, Daniel Postrach, Katrin Busch, Immanuel Rode, Kay Klapproth, Nikolaus Dietlein, Claudia Quedenau,[...]. Nature 2017
163
15

Developmental barcoding of whole mouse via homing CRISPR.
Reza Kalhor, Kian Kalhor, Leo Mejia, Kathleen Leeper, Amanda Graveline, Prashant Mali, George M Church. Science 2018
126
15

A robust and high-throughput Cre reporting and characterization system for the whole mouse brain.
Linda Madisen, Theresa A Zwingman, Susan M Sunkin, Seung Wook Oh, Hatim A Zariwala, Hong Gu, Lydia L Ng, Richard D Palmiter, Michael J Hawrylycz, Allan R Jones,[...]. Nat Neurosci 2010
14

Simultaneous lineage tracing and cell-type identification using CRISPR-Cas9-induced genetic scars.
Bastiaan Spanjaard, Bo Hu, Nina Mitic, Pedro Olivares-Chauvet, Sharan Janjuha, Nikolay Ninov, Jan Philipp Junker. Nat Biotechnol 2018
176
14

Whole-organism lineage tracing by combinatorial and cumulative genome editing.
Aaron McKenna, Gregory M Findlay, James A Gagnon, Marshall S Horwitz, Alexander F Schier, Jay Shendure. Science 2016
302
14

Zebrabow: multispectral cell labeling for cell tracing and lineage analysis in zebrafish.
Y Albert Pan, Tom Freundlich, Tamily A Weissman, David Schoppik, X Cindy Wang, Steve Zimmerman, Brian Ciruna, Joshua R Sanes, Jeff W Lichtman, Alexander F Schier. Development 2013
172
13

Synthetic recording and in situ readout of lineage information in single cells.
Kirsten L Frieda, James M Linton, Sahand Hormoz, Joonhyuk Choi, Ke-Huan K Chow, Zakary S Singer, Mark W Budde, Michael B Elowitz, Long Cai. Nature 2017
172
13



Simultaneous single-cell profiling of lineages and cell types in the vertebrate brain.
Bushra Raj, Daniel E Wagner, Aaron McKenna, Shristi Pandey, Allon M Klein, Jay Shendure, James A Gagnon, Alexander F Schier. Nat Biotechnol 2018
213
12

Fiji: an open-source platform for biological-image analysis.
Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid,[...]. Nat Methods 2012
11

Molecular recording of mammalian embryogenesis.
Michelle M Chan, Zachary D Smith, Stefanie Grosswendt, Helene Kretzmer, Thomas M Norman, Britt Adamson, Marco Jost, Jeffrey J Quinn, Dian Yang, Matthew G Jones,[...]. Nature 2019
91
12

Whole-organism clone tracing using single-cell sequencing.
Anna Alemany, Maria Florescu, Chloé S Baron, Josi Peterson-Maduro, Alexander van Oudenaarden. Nature 2018
165
11

Lineage tracing.
Kai Kretzschmar, Fiona M Watt. Cell 2012
362
11


Mosaic analysis with double markers in mice.
Hui Zong, J Sebastian Espinosa, Helen Hong Su, Mandar D Muzumdar, Liqun Luo. Cell 2005
351
8

Imaging neuronal subsets in transgenic mice expressing multiple spectral variants of GFP.
G Feng, R H Mellor, M Bernstein, C Keller-Peck, Q T Nguyen, M Wallace, J M Nerbonne, J W Lichtman, J R Sanes. Neuron 2000
8

Three-dimensional intact-tissue sequencing of single-cell transcriptional states.
Xiao Wang, William E Allen, Matthew A Wright, Emily L Sylwestrak, Nikolay Samusik, Sam Vesuna, Kathryn Evans, Cindy Liu, Charu Ramakrishnan, Jia Liu,[...]. Science 2018
280
8

Multiplex cell and lineage tracking with combinatorial labels.
Karine Loulier, Raphaëlle Barry, Pierre Mahou, Yann Le Franc, Willy Supatto, Katherine S Matho, Siohoi Ieng, Stéphane Fouquet, Elisabeth Dupin, Ryad Benosman,[...]. Neuron 2014
89
8

Clarifying Tissue Clearing.
Douglas S Richardson, Jeff W Lichtman. Cell 2015
513
8

Optical imaging. Expansion microscopy.
Fei Chen, Paul W Tillberg, Edward S Boyden. Science 2015
452
8

Rapidly evolving homing CRISPR barcodes.
Reza Kalhor, Prashant Mali, George M Church. Nat Methods 2017
91
7

Enhancing the precision of genetic lineage tracing using dual recombinases.
Lingjuan He, Yan Li, Yi Li, Wenjuan Pu, Xiuzhen Huang, Xueying Tian, Yue Wang, Hui Zhang, Qiaozhen Liu, Libo Zhang,[...]. Nat Med 2017
97
7

Cre reporter strains produced by targeted insertion of EYFP and ECFP into the ROSA26 locus.
S Srinivas, T Watanabe, C S Lin, C M William, Y Tanabe, T M Jessell, F Costantini. BMC Dev Biol 2001
7

Dre recombinase, like Cre, is a highly efficient site-specific recombinase in E. coli, mammalian cells and mice.
Konstantinos Anastassiadis, Jun Fu, Christoph Patsch, Shengbiao Hu, Stefanie Weidlich, Kristin Duerschke, Frank Buchholz, Frank Edenhofer, A Francis Stewart. Dis Model Mech 2009
171
7

Clonal dynamics of native haematopoiesis.
Jianlong Sun, Azucena Ramos, Brad Chapman, Jonathan B Johnnidis, Linda Le, Yu-Jui Ho, Allon Klein, Oliver Hofmann, Fernando D Camargo. Nature 2014
438
7

Developmental potential and dynamic behavior of hematopoietic stem cells.
I R Lemischka, D H Raulet, R C Mulligan. Cell 1986
763
7

Drosophila Brainbow: a recombinase-based fluorescence labeling technique to subdivide neural expression patterns.
Stefanie Hampel, Phuong Chung, Claire E McKellar, Donald Hall, Loren L Looger, Julie H Simpson. Nat Methods 2011
135
7

Transgenic mice for intersectional targeting of neural sensors and effectors with high specificity and performance.
Linda Madisen, Aleena R Garner, Daisuke Shimaoka, Amy S Chuong, Nathan C Klapoetke, Lu Li, Alexander van der Bourg, Yusuke Niino, Ladan Egolf, Claudio Monetti,[...]. Neuron 2015
457
7

Three-dimensional imaging of solvent-cleared organs using 3DISCO.
Ali Ertürk, Klaus Becker, Nina Jährling, Christoph P Mauch, Caroline D Hojer, Jackson G Egen, Farida Hellal, Frank Bradke, Morgan Sheng, Hans-Ulrich Dodt. Nat Protoc 2012
491
7

iDISCO: a simple, rapid method to immunolabel large tissue samples for volume imaging.
Nicolas Renier, Zhuhao Wu, David J Simon, Jing Yang, Pablo Ariel, Marc Tessier-Lavigne. Cell 2014
601
7

The embryonic cell lineage of the nematode Caenorhabditis elegans.
J E Sulston, E Schierenberg, J G White, J N Thomson. Dev Biol 1983
7

An Engineered CRISPR-Cas9 Mouse Line for Simultaneous Readout of Lineage Histories and Gene Expression Profiles in Single Cells.
Sarah Bowling, Duluxan Sritharan, Fernando G Osorio, Maximilian Nguyen, Priscilla Cheung, Alejo Rodriguez-Fraticelli, Sachin Patel, Wei-Chien Yuan, Yuko Fujiwara, Bin E Li,[...]. Cell 2020
31
22


RNA imaging. Spatially resolved, highly multiplexed RNA profiling in single cells.
Kok Hao Chen, Alistair N Boettiger, Jeffrey R Moffitt, Siyuan Wang, Xiaowei Zhuang. Science 2015
655
6

Transcriptome-scale super-resolved imaging in tissues by RNA seqFISH.
Chee-Huat Linus Eng, Michael Lawson, Qian Zhu, Ruben Dries, Noushin Koulena, Yodai Takei, Jina Yun, Christopher Cronin, Christoph Karp, Guo-Cheng Yuan,[...]. Nature 2019
303
6

A dual genetic tracing system identifies diverse and dynamic origins of cardiac valve mesenchyme.
Kuo Liu, Wei Yu, Muxue Tang, Juan Tang, Xiuxiu Liu, Qiaozhen Liu, Yan Li, Lingjuan He, Libo Zhang, Sylvia M Evans,[...]. Development 2018
17
35

A technicolour approach to the connectome.
Jeff W Lichtman, Jean Livet, Joshua R Sanes. Nat Rev Neurosci 2008
193
6

Is it possible to reconstruct an accurate cell lineage using CRISPR recorders?
Irepan Salvador-Martínez, Marco Grillo, Michalis Averof, Maximilian J Telford. Elife 2019
20
30

A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity.
Martin Jinek, Krzysztof Chylinski, Ines Fonfara, Michael Hauer, Jennifer A Doudna, Emmanuelle Charpentier. Science 2012
6

Shrinkage-mediated imaging of entire organs and organisms using uDISCO.
Chenchen Pan, Ruiyao Cai, Francesca Paola Quacquarelli, Alireza Ghasemigharagoz, Athanasios Lourbopoulos, Paweł Matryba, Nikolaus Plesnila, Martin Dichgans, Farida Hellal, Ali Ertürk. Nat Methods 2016
247
6

Continuous genetic recording with self-targeting CRISPR-Cas in human cells.
Samuel D Perli, Cheryl H Cui, Timothy K Lu. Science 2016
95
6

Lineage tracing meets single-cell omics: opportunities and challenges.
Daniel E Wagner, Allon M Klein. Nat Rev Genet 2020
64
9

RGB marking facilitates multicolor clonal cell tracking.
Kristoffer Weber, Michael Thomaschewski, Michael Warlich, Tassilo Volz, Kerstin Cornils, Birte Niebuhr, Maike Täger, Marc Lütgehetmann, Jörg-Matthias Pollok, Carol Stocking,[...]. Nat Med 2011
95
6

Ligand-activated site-specific recombination in mice.
R Feil, J Brocard, B Mascrez, M LeMeur, D Metzger, P Chambon. Proc Natl Acad Sci U S A 1996
618
5

Highly multiplexed subcellular RNA sequencing in situ.
Je Hyuk Lee, Evan R Daugharthy, Jonathan Scheiman, Reza Kalhor, Joyce L Yang, Thomas C Ferrante, Richard Terry, Sauveur S F Jeanty, Chao Li, Ryoji Amamoto,[...]. Science 2014
450
5

High-Throughput Mapping of Single-Neuron Projections by Sequencing of Barcoded RNA.
Justus M Kebschull, Pedro Garcia da Silva, Ashlan P Reid, Ian D Peikon, Dinu F Albeanu, Anthony M Zador. Neuron 2016
112
5

Single-cell mapping of lineage and identity in direct reprogramming.
Brent A Biddy, Wenjun Kong, Kenji Kamimoto, Chuner Guo, Sarah E Waye, Tao Sun, Samantha A Morris. Nature 2018
84
5


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.