A citation-based method for searching scientific literature

Dawn M Stults, Michael W Killen, Heather H Pierce, Andrew J Pierce. Genome Res 2008
Times Cited: 177







List of co-cited articles
1105 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Concerted copy number variation balances ribosomal DNA dosage in human and mouse genomes.
John G Gibbons, Alan T Branco, Susana A Godinho, Shoukai Yu, Bernardo Lemos. Proc Natl Acad Sci U S A 2015
102
36

Ribosomal DNA copy number loss and sequence variation in cancer.
Baoshan Xu, Hua Li, John M Perry, Vijay Pratap Singh, Jay Unruh, Zulin Yu, Musinu Zakari, William McDowell, Linheng Li, Jennifer L Gerton. PLoS Genet 2017
73
43


Location of ribosomal DNA in the human chromosome complement.
A S Henderson, D Warburton, K C Atwood. Proc Natl Acad Sci U S A 1972
531
24

Human rRNA gene clusters are recombinational hotspots in cancer.
Dawn M Stults, Michael W Killen, Erica P Williamson, Jon S Hourigan, H David Vargas, Susanne M Arnold, Jeffrey A Moscow, Andrew J Pierce. Cancer Res 2009
98
24

The epigenetics of rRNA genes: from molecular to chromosome biology.
Brian McStay, Ingrid Grummt. Annu Rev Cell Dev Biol 2008
363
23

Variant ribosomal RNA alleles are conserved and exhibit tissue-specific expression.
Matthew M Parks, Chad M Kurylo, Randall A Dass, Linda Bojmar, David Lyden, C Theresa Vincent, Scott C Blanchard. Sci Adv 2018
98
23

Ribosomal DNA copy number is coupled with gene expression variation and mitochondrial abundance in humans.
John G Gibbons, Alan T Branco, Shoukai Yu, Bernardo Lemos. Nat Commun 2014
82
26


The shared genomic architecture of human nucleolar organizer regions.
Ioanna Floutsakou, Saumya Agrawal, Thong T Nguyen, Cathal Seoighe, Austen R D Ganley, Brian McStay. Genome Res 2013
71
28


Human ribosomal RNA gene arrays display a broad range of palindromic structures.
Sandrine Caburet, Chiara Conti, Catherine Schurra, Ronald Lebofsky, Stuart J Edelstein, Aaron Bensimon. Genome Res 2005
100
16

Breaks in the 45S rDNA Lead to Recombination-Mediated Loss of Repeats.
Daniël O Warmerdam, Jeroen van den Berg, René H Medema. Cell Rep 2016
55
29

Abundance of ribosomal RNA gene copies maintains genome integrity.
Satoru Ide, Takaaki Miyazaki, Hisaji Maki, Takehiko Kobayashi. Science 2010
197
15

Ribosomal DNA contributes to global chromatin regulation.
Silvana Paredes, Keith A Maggert. Proc Natl Acad Sci U S A 2009
97
14


Ribosomal DNA copy loss and repeat instability in ATRX-mutated cancers.
Maheshi Udugama, Elaine Sanij, Hsiao P J Voon, Jinbae Son, Linda Hii, Jeremy D Henson, F Lyn Chan, Fiona T M Chang, Yumei Liu, Richard B Pearson,[...]. Proc Natl Acad Sci U S A 2018
50
28

Loss of Bloom syndrome protein destabilizes human gene cluster architecture.
Michael W Killen, Dawn M Stults, Noritaka Adachi, Les Hanakahi, Andrew J Pierce. Hum Mol Genet 2009
62
20

ATM Dependent Silencing Links Nucleolar Chromatin Reorganization to DNA Damage Recognition.
Shane M Harding, Jonathan A Boiarsky, Roger A Greenberg. Cell Rep 2015
100
13

Ribosomal RNA gene repeats, their stability and cellular senescence.
Takehiko Kobayashi. Proc Jpn Acad Ser B Phys Biol Sci 2014
91
14

Integrative genomic analysis of human ribosomal DNA.
Gabriel E Zentner, Alina Saiakhova, Pavel Manaenkov, Mark D Adams, Peter C Scacheri. Nucleic Acids Res 2011
107
12

Inhibition of RNA polymerase I as a therapeutic strategy to promote cancer-specific activation of p53.
Megan J Bywater, Gretchen Poortinga, Elaine Sanij, Nadine Hein, Abigail Peck, Carleen Cullinane, Meaghan Wall, Leonie Cluse, Denis Drygin, Kenna Anderes,[...]. Cancer Cell 2012
369
12

Nucleolar reorganization in response to rDNA damage.
Marjolein van Sluis, Brian McStay. Curr Opin Cell Biol 2017
48
25


The ATM repair pathway inhibits RNA polymerase I transcription in response to chromosome breaks.
Michael Kruhlak, Elizabeth E Crouch, Marika Orlov, Carolina Montaño, Stanislaw A Gorski, André Nussenzweig, Tom Misteli, Robert D Phair, Rafael Casellas. Nature 2007
209
11

An overview of pre-ribosomal RNA processing in eukaryotes.
Anthony K Henras, Célia Plisson-Chastang, Marie-Françoise O'Donohue, Anirban Chakraborty, Pierre-Emmanuel Gleizes. Wiley Interdiscip Rev RNA 2015
318
11


Targeting RNA polymerase I with an oral small molecule CX-5461 inhibits ribosomal RNA synthesis and solid tumor growth.
Denis Drygin, Amy Lin, Josh Bliesath, Caroline B Ho, Sean E O'Brien, Chris Proffitt, Mayuko Omori, Mustapha Haddach, Michael K Schwaebe, Adam Siddiqui-Jain,[...]. Cancer Res 2011
348
10

Ribosomal DNA deletions modulate genome-wide gene expression: "rDNA-sensitive" genes and natural variation.
Silvana Paredes, Alan T Branco, Daniel L Hartl, Keith A Maggert, Bernardo Lemos. PLoS Genet 2011
86
11


The multifunctional nucleolus.
François-Michel Boisvert, Silvana van Koningsbruggen, Joaquín Navascués, Angus I Lamond. Nat Rev Mol Cell Biol 2007
10



DNA replication stress restricts ribosomal DNA copy number.
Devika Salim, William D Bradford, Amy Freeland, Gillian Cady, Jianmin Wang, Steven C Pruitt, Jennifer L Gerton. PLoS Genet 2017
49
20

Variation in human chromosome 21 ribosomal RNA genes characterized by TAR cloning and long-read sequencing.
Jung-Hyun Kim, Alexander T Dilthey, Ramaiah Nagaraja, Hee-Sheung Lee, Sergey Koren, Dawood Dudekula, William H Wood Iii, Yulan Piao, Aleksey Y Ogurtsov, Koichi Utani,[...]. Nucleic Acids Res 2018
31
32

Repeated genes in eukaryotes.
E O Long, I B Dawid. Annu Rev Biochem 1980
984
9

Finely orchestrated movements: evolution of the ribosomal RNA genes.
Thomas H Eickbush, Danna G Eickbush. Genetics 2007
323
9

The correlation between rDNA copy number and genome size in eukaryotes.
Cheryl D Prokopowich, T Ryan Gregory, Teresa J Crease. Genome 2003
248
9

Genome organization in and around the nucleolus.
Attila Németh, Gernot Längst. Trends Genet 2011
133
9

Replication stress is a potent driver of functional decline in ageing haematopoietic stem cells.
Johanna Flach, Sietske T Bakker, Mary Mohrin, Pauline C Conroy, Eric M Pietras, Damien Reynaud, Silvia Alvarez, Morgan E Diolaiti, Fernando Ugarte, E Camilla Forsberg,[...]. Nature 2014
368
9


Treacher Collins syndrome TCOF1 protein cooperates with NBS1 in the DNA damage response.
Alberto Ciccia, Jen-Wei Huang, Lior Izhar, Mathew E Sowa, J Wade Harper, Stephen J Elledge. Proc Natl Acad Sci U S A 2014
73
12

The NoRC complex mediates the heterochromatin formation and stability of silent rRNA genes and centromeric repeats.
Claudio Guetg, Philipp Lienemann, Valentina Sirri, Ingrid Grummt, Danièle Hernandez-Verdun, Michael O Hottiger, Martin Fussenegger, Raffaella Santoro. EMBO J 2010
128
9

The long-range interaction map of ribosomal DNA arrays.
Shoukai Yu, Bernardo Lemos. PLoS Genet 2018
21
42

A natural polymorphism in rDNA replication origins links origin activation with calorie restriction and lifespan.
Elizabeth X Kwan, Eric J Foss, Scott Tsuchiyama, Gina M Alvino, Leonid Kruglyak, Matt Kaeberlein, M K Raghuraman, Bonita J Brewer, Brian K Kennedy, Antonio Bedalov. PLoS Genet 2013
68
13


Chemotherapeutic drugs inhibit ribosome biogenesis at various levels.
Kaspar Burger, Bastian Mühl, Thomas Harasim, Michaela Rohrmoser, Anastassia Malamoussi, Mathias Orban, Markus Kellner, Anita Gruber-Eber, Elisabeth Kremmer, Michael Hölzel,[...]. J Biol Chem 2010
264
8

UBF levels determine the number of active ribosomal RNA genes in mammals.
Elaine Sanij, Gretchen Poortinga, Kerith Sharkey, Sandy Hung, Timothy P Holloway, Jaclyn Quin, Elysia Robb, Lee H Wong, Walter G Thomas, Victor Stefanovsky,[...]. J Cell Biol 2008
134
8

Human ribosomal RNA gene cluster: identification of the proximal end containing a novel tandem repeat sequence.
K Sakai, T Ohta, S Minoshima, J Kudoh, Y Wang, P J de Jong, N Shimizu. Genomics 1995
52
15

ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage.
Shuhei Matsuoka, Bryan A Ballif, Agata Smogorzewska, E Robert McDonald, Kristen E Hurov, Ji Luo, Corey E Bakalarski, Zhenming Zhao, Nicole Solimini, Yaniv Lerenthal,[...]. Science 2007
8


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.