A citation-based method for searching scientific literature

Adi Barzel, Martin Kupiec. Nat Rev Genet 2008
Times Cited: 133







List of co-cited articles
1044 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Mechanism of eukaryotic homologous recombination.
Joseph San Filippo, Patrick Sung, Hannah Klein. Annu Rev Biochem 2008
18

Recombination, Pairing, and Synapsis of Homologs during Meiosis.
Denise Zickler, Nancy Kleckner. Cold Spring Harb Perspect Biol 2015
375
18



Single molecule detection of direct, homologous, DNA/DNA pairing.
C Danilowicz, C H Lee, K Kim, K Hatch, V W Coljee, N Kleckner, M Prentiss. Proc Natl Acad Sci U S A 2009
56
26

Increased mobility of double-strand breaks requires Mec1, Rad9 and the homologous recombination machinery.
Vincent Dion, Véronique Kalck, Chihiro Horigome, Benjamin D Towbin, Susan M Gasser. Nat Cell Biol 2012
212
15


Increased chromosome mobility facilitates homology search during recombination.
Judith Miné-Hattab, Rodney Rothstein. Nat Cell Biol 2012
238
15

Homologous pairing preceding SPO11-mediated double-strand breaks in mice.
Kingsley A Boateng, Marina A Bellani, Ivan V Gregoretti, Florencia Pratto, R Daniel Camerini-Otero. Dev Cell 2013
99
15


Mechanism of homologous recombination from the RecA-ssDNA/dsDNA structures.
Zhucheng Chen, Haijuan Yang, Nikola P Pavletich. Nature 2008
478
13

Dynamics of homologous chromosome pairing during meiotic prophase in fission yeast.
Da-Qiao Ding, Ayumu Yamamoto, Tokuko Haraguchi, Yasushi Hiraoka. Dev Cell 2004
181
13

Regulation of homologous recombination in eukaryotes.
Wolf-Dietrich Heyer, Kirk T Ehmsen, Jie Liu. Annu Rev Genet 2010
683
13

Meiotic chromosomes: integrating structure and function.
D Zickler, N Kleckner. Annu Rev Genet 1999
904
13

Mechanisms and principles of homology search during recombination.
Jörg Renkawitz, Claudio A Lademann, Stefan Jentsch. Nat Rev Mol Cell Biol 2014
98
13

DNA double helices recognize mutual sequence homology in a protein free environment.
Geoff S Baldwin, Nicholas J Brooks, Rebecca E Robson, Aaron Wynveen, Arach Goldar, Sergey Leikin, John M Seddon, Alexei A Kornyshev. J Phys Chem B 2008
55
21

The SUN rises on meiotic chromosome dynamics.
Yasushi Hiraoka, Abby F Dernburg. Dev Cell 2009
197
12

Homologous chromosome interactions in meiosis: diversity amidst conservation.
Jennifer L Gerton, R Scott Hawley. Nat Rev Genet 2005
213
12

Meiosis-specific noncoding RNA mediates robust pairing of homologous chromosomes in meiosis.
Da-Qiao Ding, Kasumi Okamasa, Miho Yamane, Chihiro Tsutsumi, Tokuko Haraguchi, Masayuki Yamamoto, Yasushi Hiraoka. Science 2012
90
13

Meiotic recombination in C. elegans initiates by a conserved mechanism and is dispensable for homologous chromosome synapsis.
A F Dernburg, K McDonald, G Moulder, R Barstead, M Dresser, A M Villeneuve. Cell 1998
561
12

A bouquet makes ends meet.
H Scherthan. Nat Rev Mol Cell Biol 2001
298
11

Chromosome territories.
Thomas Cremer, Marion Cremer. Cold Spring Harb Perspect Biol 2010
697
10

Sequence recognition in the pairing of DNA duplexes.
A A Kornyshev, S Leikin. Phys Rev Lett 2001
68
14

RecA filament sliding on DNA facilitates homology search.
Kaushik Ragunathan, Cheng Liu, Taekjip Ha. Elife 2012
68
14

Comprehensive mapping of long-range interactions reveals folding principles of the human genome.
Erez Lieberman-Aiden, Nynke L van Berkum, Louise Williams, Maxim Imakaev, Tobias Ragoczy, Agnes Telling, Ido Amit, Bryan R Lajoie, Peter J Sabo, Michael O Dorschner,[...]. Science 2009
9

Principles of chromosomal organization: lessons from yeast.
Christophe Zimmer, Emmanuelle Fabre. J Cell Biol 2011
93
9




Double-stranded DNA homology produces a physical signature.
Xing Wang, Xiaoping Zhang, Chengde Mao, Nadrian C Seeman. Proc Natl Acad Sci U S A 2010
25
36

Meiosis-specific cohesin mediates homolog recognition in mouse spermatocytes.
Kei-Ichiro Ishiguro, Jihye Kim, Hiroki Shibuya, Abrahan Hernández-Hernández, Aussie Suzuki, Tatsuo Fukagawa, Go Shioi, Hiroshi Kiyonari, Xin C Li, John Schimenti,[...]. Genes Dev 2014
87
10

DNA sequence alignment by microhomology sampling during homologous recombination.
Zhi Qi, Sy Redding, Ja Yil Lee, Bryan Gibb, YoungHo Kwon, Hengyao Niu, William A Gaines, Patrick Sung, Eric C Greene. Cell 2015
130
9

Homologous Pairing between Long DNA Double Helices.
Alexey K Mazur. Phys Rev Lett 2016
12
75

Capturing chromosome conformation.
Job Dekker, Karsten Rippe, Martijn Dekker, Nancy Kleckner. Science 2002
8

Somatic pairing of homologs in budding yeast: existence and modulation.
S M Burgess, N Kleckner, B M Weiner. Genes Dev 1999
91
8

Double-strand breaks in heterochromatin move outside of a dynamic HP1a domain to complete recombinational repair.
Irene Chiolo, Aki Minoda, Serafin U Colmenares, Aris Polyzos, Sylvain V Costes, Gary H Karpen. Cell 2011
369
8


Mechanism of homology recognition in DNA recombination from dual-molecule experiments.
Iwijn De Vlaminck, Marijn T J van Loenhout, Ludovit Zweifel, Johan den Blanken, Koen Hooning, Susanne Hage, Jacob Kerssemakers, Cees Dekker. Mol Cell 2012
65
12

Meiotic synapsis in the absence of recombination.
K S McKim, B L Green-Marroquin, J J Sekelsky, G Chin, C Steinberg, R Khodosh, R S Hawley. Science 1998
213
8

Prelude to a division.
Needhi Bhalla, Abby F Dernburg. Annu Rev Cell Dev Biol 2008
90
8

A three-dimensional model of the yeast genome.
Zhijun Duan, Mirela Andronescu, Kevin Schutz, Sean McIlwain, Yoo Jung Kim, Choli Lee, Jay Shendure, Stanley Fields, C Anthony Blau, William S Noble. Nature 2010
641
8

Monitoring homology search during DNA double-strand break repair in vivo.
Jörg Renkawitz, Claudio A Lademann, Marian Kalocsay, Stefan Jentsch. Mol Cell 2013
51
15


Mechanisms and regulation of mitotic recombination in Saccharomyces cerevisiae.
Lorraine S Symington, Rodney Rothstein, Michael Lisby. Genetics 2014
225
8

Chromosome position determines the success of double-strand break repair.
Cheng-Sheng Lee, Ruoxi W Wang, Hsiao-Han Chang, Daniel Capurso, Mark R Segal, James E Haber. Proc Natl Acad Sci U S A 2016
62
12

The double-strand-break repair model for recombination.
J W Szostak, T L Orr-Weaver, R J Rothstein, F W Stahl. Cell 1983
7

Rad54 protein possesses chromatin-remodeling activity stimulated by the Rad51-ssDNA nucleoprotein filament.
Andrei Alexeev, Alexander Mazin, Stephen C Kowalczykowski. Nat Struct Biol 2003
184
7

Recombinational DNA repair in a cellular context: a search for the homology search.
Allon Weiner, Nathan Zauberman, Abraham Minsky. Nat Rev Microbiol 2009
29
24

The homology recognition well as an innate property of DNA structure.
Alexei A Kornyshev, Aaron Wynveen. Proc Natl Acad Sci U S A 2009
25
28

Interphase chromosomes undergo constrained diffusional motion in living cells.
W F Marshall, A Straight, J F Marko, J Swedlow, A Dernburg, A Belmont, A W Murray, D A Agard, J W Sedat. Curr Biol 1997
494
7


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.