A citation-based method for searching scientific literature

Kazuhide Asakawa, Maximiliano L Suster, Kanta Mizusawa, Saori Nagayoshi, Tomoya Kotani, Akihiro Urasaki, Yasuyuki Kishimoto, Masahiko Hibi, Koichi Kawakami. Proc Natl Acad Sci U S A 2008
Times Cited: 344







List of co-cited articles
563 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Stages of embryonic development of the zebrafish.
C B Kimmel, W W Ballard, S R Kimmel, B Ullmann, T F Schilling. Dev Dyn 1995
20

Targeting neural circuitry in zebrafish using GAL4 enhancer trapping.
Ethan K Scott, Lindsay Mason, Aristides B Arrenberg, Limor Ziv, Nathan J Gosse, Tong Xiao, Neil C Chi, Kazuhide Asakawa, Koichi Kawakami, Herwig Baier. Nat Methods 2007
262
20

Transactivation from Gal4-VP16 transgenic insertions for tissue-specific cell labeling and ablation in zebrafish.
Jon M Davison, Courtney M Akitake, Mary G Goll, Jerry M Rhee, Nathan Gosse, Herwig Baier, Marnie E Halpern, Steven D Leach, Michael J Parsons. Dev Biol 2007
237
15

zTrap: zebrafish gene trap and enhancer trap database.
Koichi Kawakami, Gembu Abe, Tokuko Asada, Kazuhide Asakawa, Ryuichi Fukuda, Aki Ito, Pradeep Lal, Naoko Mouri, Akira Muto, Maximilliano L Suster,[...]. BMC Dev Biol 2010
99
13

Transgenic tools to characterize neuronal properties of discrete populations of zebrafish neurons.
Chie Satou, Yukiko Kimura, Hiromi Hirata, Maximiliano L Suster, Koichi Kawakami, Shin-ichi Higashijima. Development 2013
97
11

Establishment of Gal4 transgenic zebrafish lines for analysis of development of cerebellar neural circuitry.
Miki Takeuchi, Koji Matsuda, Shingo Yamaguchi, Kazuhide Asakawa, Nobuhiko Miyasaka, Pradeep Lal, Yoshihiro Yoshihara, Akihiko Koga, Koichi Kawakami, Takashi Shimizu,[...]. Dev Biol 2015
36
25

The Tol2kit: a multisite gateway-based construction kit for Tol2 transposon transgenesis constructs.
Kristen M Kwan, Esther Fujimoto, Clemens Grabher, Benjamin D Mangum, Melissa E Hardy, Douglas S Campbell, John M Parant, H Joseph Yost, John P Kanki, Chi-Bin Chien. Dev Dyn 2007
8

Anatomy of zebrafish cerebellum and screen for mutations affecting its development.
Young-Ki Bae, Shuichi Kani, Takashi Shimizu, Koji Tanabe, Hideaki Nojima, Yukiko Kimura, Shin-ichi Higashijima, Masahiko Hibi. Dev Biol 2009
161
8

Rapid BAC selection for tol2-mediated transgenesis in zebrafish.
Jeroen Bussmann, Stefan Schulte-Merker. Development 2011
109
8

A transposon-mediated gene trap approach identifies developmentally regulated genes in zebrafish.
Koichi Kawakami, Hisashi Takeda, Noriko Kawakami, Makoto Kobayashi, Naoto Matsuda, Masayoshi Mishina. Dev Cell 2004
586
8

Brain-wide neuronal dynamics during motor adaptation in zebrafish.
Misha B Ahrens, Jennifer M Li, Michael B Orger, Drew N Robson, Alexander F Schier, Florian Engert, Ruben Portugues. Nature 2012
335
8


Efficient multiplex biallelic zebrafish genome editing using a CRISPR nuclease system.
Li-En Jao, Susan R Wente, Wenbiao Chen. Proc Natl Acad Sci U S A 2013
722
8

The zebrafish reference genome sequence and its relationship to the human genome.
Kerstin Howe, Matthew D Clark, Carlos F Torroja, James Torrance, Camille Berthelot, Matthieu Muffato, John E Collins, Sean Humphray, Karen McLaren, Lucy Matthews,[...]. Nature 2013
8


Ccbe1 is required for embryonic lymphangiogenesis and venous sprouting.
Benjamin M Hogan, Frank L Bos, Jeroen Bussmann, Merlijn Witte, Neil C Chi, Henricus J Duckers, Stefan Schulte-Merker. Nat Genet 2009
293
8

Conditional targeted cell ablation in zebrafish: a new tool for regeneration studies.
Silvia Curado, Ryan M Anderson, Benno Jungblut, Jeff Mumm, Eric Schroeter, Didier Y R Stainier. Dev Dyn 2007
311
8

Cellular dissection of the spinal cord motor column by BAC transgenesis and gene trapping in zebrafish.
Kazuhide Asakawa, Gembu Abe, Koichi Kawakami. Front Neural Circuits 2013
21
38

Genetic targeting and anatomical registration of neuronal populations in the zebrafish brain with a new set of BAC transgenic tools.
Dominique Förster, Irene Arnold-Ammer, Eva Laurell, Alison J Barker, António M Fernandes, Karin Finger-Baier, Alessandro Filosa, Thomas O Helmbrecht, Yvonne Kölsch, Enrico Kühn,[...]. Sci Rep 2017
24
29

Transparent adult zebrafish as a tool for in vivo transplantation analysis.
Richard Mark White, Anna Sessa, Christopher Burke, Teresa Bowman, Jocelyn LeBlanc, Craig Ceol, Caitlin Bourque, Michael Dovey, Wolfram Goessling, Caroline Erter Burns,[...]. Cell Stem Cell 2008
691
7


A 3D Searchable Database of Transgenic Zebrafish Gal4 and Cre Lines for Functional Neuroanatomy Studies.
Gregory D Marquart, Kathryn M Tabor, Mary Brown, Jennifer L Strykowski, Gaurav K Varshney, Matthew C LaFave, Thomas Mueller, Shawn M Burgess, Shin-Ichi Higashijima, Harold A Burgess. Front Neural Circuits 2015
54
12

lyve1 expression reveals novel lymphatic vessels and new mechanisms for lymphatic vessel development in zebrafish.
Kazuhide S Okuda, Jonathan W Astin, June P Misa, Maria V Flores, Kathryn E Crosier, Philip S Crosier. Development 2012
110
7

High-resolution analysis of central nervous system expression patterns in zebrafish Gal4 enhancer-trap lines.
Hideo Otsuna, David A Hutcheson, Robert N Duncan, Adam D McPherson, Aaron N Scoresby, Brooke F Gaynes, Zongzong Tong, Esther Fujimoto, Kristen M Kwan, Chi-Bin Chien,[...]. Dev Dyn 2015
16
37

Development and evolution of cerebellar neural circuits.
Mitsuhiro Hashimoto, Masahiko Hibi. Dev Growth Differ 2012
73
8

Vegfc/Flt4 signalling is suppressed by Dll4 in developing zebrafish intersegmental arteries.
Benjamin M Hogan, Robert Herpers, Merlijn Witte, Hanna Heloterä, Kari Alitalo, Henricus J Duckers, Stefan Schulte-Merker. Development 2009
165
6

Optimization of a Neurotoxin to Investigate the Contribution of Excitatory Interneurons to Speed Modulation In Vivo.
Jenna R Sternberg, Kristen E Severi, Kevin Fidelin, Johanna Gomez, Hideshi Ihara, Yara Alcheikh, Jeffrey M Hubbard, Koichi Kawakami, Maximiliano Suster, Claire Wyart. Curr Biol 2016
32
18

Targeted gene expression by the Gal4-UAS system in zebrafish.
Kazuhide Asakawa, Koichi Kawakami. Dev Growth Differ 2008
116
6



Divergence of zebrafish and mouse lymphatic cell fate specification pathways.
Andreas van Impel, Zhonghua Zhao, Dorien M A Hermkens, M Guy Roukens, Johanna C Fischer, Josi Peterson-Maduro, Henricus Duckers, Elke A Ober, Philip W Ingham, Stefan Schulte-Merker. Development 2014
92
6

Ccbe1 regulates Vegfc-mediated induction of Vegfr3 signaling during embryonic lymphangiogenesis.
Ludovic Le Guen, Terhi Karpanen, Dörte Schulte, Nicole C Harris, Katarzyna Koltowska, Guy Roukens, Neil I Bower, Andreas van Impel, Steven A Stacker, Marc G Achen,[...]. Development 2014
102
6

Foxn4 directly regulates tbx2b expression and atrioventricular canal formation.
Neil C Chi, Robin M Shaw, Sarah De Val, Guson Kang, Lily Y Jan, Brian L Black, Didier Y R Stainier. Genes Dev 2008
223
6

Cellular and molecular analyses of vascular tube and lumen formation in zebrafish.
Suk-Won Jin, Dimitris Beis, Tracy Mitchell, Jau-Nian Chen, Didier Y R Stainier. Development 2005
510
6

Optimized Gal4 genetics for permanent gene expression mapping in zebrafish.
Martin Distel, Mario F Wullimann, Reinhard W Köster. Proc Natl Acad Sci U S A 2009
180
6

Neuromuscular synapses can form in vivo by incorporation of initially aneural postsynaptic specializations.
Heather Flanagan-Steet, Michael A Fox, Dirk Meyer, Joshua R Sanes. Development 2005
220
6

Transgenerational analysis of transcriptional silencing in zebrafish.
Courtney M Akitake, Michelle Macurak, Marnie E Halpern, Mary G Goll. Dev Biol 2011
95
6

Fiji: an open-source platform for biological-image analysis.
Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid,[...]. Nat Methods 2012
6

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.
Mark D Robinson, Davis J McCarthy, Gordon K Smyth. Bioinformatics 2010
5

The Wnt/beta-catenin pathway regulates cardiac valve formation.
Adam F L Hurlstone, Anna-Pavlina G Haramis, Erno Wienholds, Harry Begthel, Jeroen Korving, Fredericus Van Eeden, Edwin Cuppen, Danica Zivkovic, Ronald H A Plasterk, Hans Clevers. Nature 2003
313
5

Cell tracking using a photoconvertible fluorescent protein.
Kohei Hatta, Hitomi Tsujii, Tomomi Omura. Nat Protoc 2006
143
5

Clarification of mural cell coverage of vascular endothelial cells by live imaging of zebrafish.
Koji Ando, Shigetomo Fukuhara, Nanae Izumi, Hiroyuki Nakajima, Hajime Fukui, Robert N Kelsh, Naoki Mochizuki. Development 2016
83
6

Filtering of visual information in the tectum by an identified neural circuit.
Filippo Del Bene, Claire Wyart, Estuardo Robles, Amanda Tran, Loren Looger, Ethan K Scott, Ehud Y Isacoff, Herwig Baier. Science 2010
155
5

Optogenetic dissection of a behavioural module in the vertebrate spinal cord.
Claire Wyart, Filippo Del Bene, Erica Warp, Ethan K Scott, Dirk Trauner, Herwig Baier, Ehud Y Isacoff. Nature 2009
261
5

Ultrasensitive fluorescent proteins for imaging neuronal activity.
Tsai-Wen Chen, Trevor J Wardill, Yi Sun, Stefan R Pulver, Sabine L Renninger, Amy Baohan, Eric R Schreiter, Rex A Kerr, Michael B Orger, Vivek Jayaraman,[...]. Nature 2013
5

Whole-brain functional imaging at cellular resolution using light-sheet microscopy.
Misha B Ahrens, Michael B Orger, Drew N Robson, Jennifer M Li, Philipp J Keller. Nat Methods 2013
591
5

A dedicated visual pathway for prey detection in larval zebrafish.
Julia L Semmelhack, Joseph C Donovan, Tod R Thiele, Enrico Kuehn, Eva Laurell, Herwig Baier. Elife 2014
91
5

Linking Neurons to Network Function and Behavior by Two-Photon Holographic Optogenetics and Volumetric Imaging.
Marco Dal Maschio, Joseph C Donovan, Thomas O Helmbrecht, Herwig Baier. Neuron 2017
61
8

High-precision registration between zebrafish brain atlases using symmetric diffeomorphic normalization.
Gregory D Marquart, Kathryn M Tabor, Eric J Horstick, Mary Brown, Alexandra K Geoca, Nicholas F Polys, Damian Dalle Nogare, Harold A Burgess. Gigascience 2017
31
16

Insertional mutagenesis by the Tol2 transposon-mediated enhancer trap approach generated mutations in two developmental genes: tcf7 and synembryn-like.
Saori Nagayoshi, Eriko Hayashi, Gembu Abe, Naoki Osato, Kazuhide Asakawa, Akihiro Urasaki, Kazuki Horikawa, Kazuho Ikeo, Hiroyuki Takeda, Koichi Kawakami. Development 2008
115
5


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.