A citation-based method for searching scientific literature

Peng Yin, Harry M T Choi, Colby R Calvert, Niles A Pierce. Nature 2008
Times Cited: 847







List of co-cited articles
760 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Triggered amplification by hybridization chain reaction.
Robert M Dirks, Niles A Pierce. Proc Natl Acad Sci U S A 2004
975
42

Engineering entropy-driven reactions and networks catalyzed by DNA.
David Yu Zhang, Andrew J Turberfield, Bernard Yurke, Erik Winfree. Science 2007
576
24

A DNA-fuelled molecular machine made of DNA.
B Yurke, A J Turberfield, A P Mills, F C Simmel, J L Neumann. Nature 2000
23

Dynamic DNA nanotechnology using strand-displacement reactions.
David Yu Zhang, Georg Seelig. Nat Chem 2011
890
21

Control of DNA strand displacement kinetics using toehold exchange.
David Yu Zhang, Erik Winfree. J Am Chem Soc 2009
708
19

Rational, modular adaptation of enzyme-free DNA circuits to multiple detection methods.
Bingling Li, Andrew D Ellington, Xi Chen. Nucleic Acids Res 2011
316
17


Applications of Catalytic Hairpin Assembly Reaction in Biosensing.
Jumei Liu, Ye Zhang, Huabin Xie, Li Zhao, Lei Zheng, Huiming Ye. Small 2019
83
16


Enzyme-free nucleic acid logic circuits.
Georg Seelig, David Soloveichik, David Yu Zhang, Erik Winfree. Science 2006
735
13

Principles and Applications of Nucleic Acid Strand Displacement Reactions.
Friedrich C Simmel, Bernard Yurke, Hari R Singh. Chem Rev 2019
192
12

On the biophysics and kinetics of toehold-mediated DNA strand displacement.
Niranjan Srinivas, Thomas E Ouldridge, Petr Sulc, Joseph M Schaeffer, Bernard Yurke, Ard A Louis, Jonathan P K Doye, Erik Winfree. Nucleic Acids Res 2013
242
11

Diagnostic applications of nucleic acid circuits.
Cheulhee Jung, Andrew D Ellington. Acc Chem Res 2014
177
11

Real-time detection of isothermal amplification reactions with thermostable catalytic hairpin assembly.
Yu Sherry Jiang, Bingling Li, John N Milligan, Sanchita Bhadra, Andrew D Ellington. J Am Chem Soc 2013
174
11

Remote toehold: a mechanism for flexible control of DNA hybridization kinetics.
Anthony J Genot, David Yu Zhang, Jonathan Bath, Andrew J Turberfield. J Am Chem Soc 2011
157
11

NUPACK: Analysis and design of nucleic acid systems.
Joseph N Zadeh, Conrad D Steenberg, Justin S Bois, Brian R Wolfe, Marshall B Pierce, Asif R Khan, Robert M Dirks, Niles A Pierce. J Comput Chem 2011
748
11

Isothermal Amplification of Nucleic Acids.
Yongxi Zhao, Feng Chen, Qian Li, Lihua Wang, Chunhai Fan. Chem Rev 2015
700
10

A Nonenzymatic Hairpin DNA Cascade Reaction Provides High Signal Gain of mRNA Imaging inside Live Cells.
Cuichen Wu, Sena Cansiz, Liqin Zhang, I-Ting Teng, Liping Qiu, Juan Li, Yuan Liu, Cuisong Zhou, Rong Hu, Tao Zhang,[...]. J Am Chem Soc 2015
191
10

Loop-mediated isothermal amplification of DNA.
T Notomi, H Okayama, H Masubuchi, T Yonekawa, K Watanabe, N Amino, T Hase. Nucleic Acids Res 2000
10


A stochastic DNA walker that traverses a microparticle surface.
C Jung, P B Allen, A D Ellington. Nat Nanotechnol 2016
196
10

Construction of an enzyme-free concatenated DNA circuit for signal amplification and intracellular imaging.
Huimin Wang, Chunxiao Li, Xiaoqing Liu, Xiang Zhou, Fuan Wang. Chem Sci 2018
91
9

Mismatches improve the performance of strand-displacement nucleic Acid circuits.
Yu Sherry Jiang, Sanchita Bhadra, Bingling Li, Andrew D Ellington. Angew Chem Int Ed Engl 2014
92
9

Genetically Encoded Catalytic Hairpin Assembly for Sensitive RNA Imaging in Live Cells.
Aruni P K K Karunanayake Mudiyanselage, Qikun Yu, Mark A Leon-Duque, Bin Zhao, Rigumula Wu, Mingxu You. J Am Chem Soc 2018
111
9

Near-Infrared Light-Initiated Hybridization Chain Reaction for Spatially and Temporally Resolved Signal Amplification.
Hongqian Chu, Jian Zhao, Yongsheng Mi, Yuliang Zhao, Lele Li. Angew Chem Int Ed Engl 2019
75
12

Self-Replicating Catalyzed Hairpin Assembly for Rapid Signal Amplification.
Jianyuan Dai, Hongfei He, Zhijuan Duan, Yong Guo, Dan Xiao. Anal Chem 2017
35
22

Self-assembly of DNA into nanoscale three-dimensional shapes.
Shawn M Douglas, Hendrik Dietz, Tim Liedl, Björn Högberg, Franziska Graf, William M Shih. Nature 2009
8

Programmable self-assembly of three-dimensional nanostructures from 10,000 unique components.
Luvena L Ong, Nikita Hanikel, Omar K Yaghi, Casey Grun, Maximilian T Strauss, Patrick Bron, Josephine Lai-Kee-Him, Florian Schueder, Bei Wang, Pengfei Wang,[...]. Nature 2017
179
8

A cargo-sorting DNA robot.
Anupama J Thubagere, Wei Li, Robert F Johnson, Zibo Chen, Shayan Doroudi, Yae Lim Lee, Gregory Izatt, Sarah Wittman, Niranjan Srinivas, Damien Woods,[...]. Science 2017
213
8

Effective design principles for leakless strand displacement systems.
Boya Wang, Chris Thachuk, Andrew D Ellington, Erik Winfree, David Soloveichik. Proc Natl Acad Sci U S A 2018
44
18

Three-dimensional DNA nanostructures to improve the hyperbranched hybridization chain reaction.
Jing Wang, Dong-Xia Wang, Jia-Yi Ma, Ya-Xin Wang, De-Ming Kong. Chem Sci 2019
65
12

A DNA nanowire based localized catalytic hairpin assembly reaction for microRNA imaging in live cells.
Qiaomei Wei, Jin Huang, Jing Li, Jiaoli Wang, Xiaohai Yang, Jianbo Liu, Kemin Wang. Chem Sci 2018
72
9

Aptamer-integrated DNA nanostructures for biosensing, bioimaging and cancer therapy.
Hong-Min Meng, Hui Liu, Hailan Kuai, Ruizi Peng, Liuting Mo, Xiao-Bing Zhang. Chem Soc Rev 2016
292
7

Stacking nonenzymatic circuits for high signal gain.
Xi Chen, Neima Briggs, Jeremy R McLain, Andrew D Ellington. Proc Natl Acad Sci U S A 2013
154
7

RNA imaging in living mice enabled by an in vivo hybridization chain reaction circuit with a tripartite DNA probe.
Han Wu, Ting-Ting Chen, Xiang-Nan Wang, Yonggang Ke, Jian-Hui Jiang. Chem Sci 2019
40
17

DNA Origami: Scaffolds for Creating Higher Order Structures.
Fan Hong, Fei Zhang, Yan Liu, Hao Yan. Chem Rev 2017
442
7

Three-dimensional structures self-assembled from DNA bricks.
Yonggang Ke, Luvena L Ong, William M Shih, Peng Yin. Science 2012
629
7

A bipedal DNA Brownian motor with coordinated legs.
Tosan Omabegho, Ruojie Sha, Nadrian C Seeman. Science 2009
358
7


Imaging Endogenous Metal Ions in Living Cells Using a DNAzyme-Catalytic Hairpin Assembly Probe.
Zhenkun Wu, Huanhuan Fan, Nitya Sai Reddy Satyavolu, WenJing Wang, Ryan Lake, Jian-Hui Jiang, Yi Lu. Angew Chem Int Ed Engl 2017
104
7

Programmable in situ amplification for multiplexed imaging of mRNA expression.
Harry M T Choi, Joann Y Chang, Le A Trinh, Jennifer E Padilla, Scott E Fraser, Niles A Pierce. Nat Biotechnol 2010
385
7

Rational Engineering of a Dynamic, Entropy-Driven DNA Nanomachine for Intracellular MicroRNA Imaging.
Cheng-Pin Liang, Pei-Qiang Ma, Hui Liu, Xinggang Guo, Bin-Cheng Yin, Bang-Ce Ye. Angew Chem Int Ed Engl 2017
187
7

Electrochemical detection of nucleic acids, proteins, small molecules and cells using a DNA-nanostructure-based universal biosensing platform.
Meihua Lin, Ping Song, Guobao Zhou, Xiaolei Zuo, Ali Aldalbahi, Xiaoding Lou, Jiye Shi, Chunhai Fan. Nat Protoc 2016
184
6

DNA branch migration reactions through photocontrollable toehold formation.
Fujian Huang, Mingxu You, Da Han, Xiangling Xiong, Haojun Liang, Weihong Tan. J Am Chem Soc 2013
63
9

A microRNA-initiated DNAzyme motor operating in living cells.
Hanyong Peng, Xing-Fang Li, Hongquan Zhang, X Chris Le. Nat Commun 2017
260
6


Strand displacement amplification--an isothermal, in vitro DNA amplification technique.
G T Walker, M S Fraiser, J L Schram, M C Little, J G Nadeau, D P Malinowski. Nucleic Acids Res 1992
466
6

A synthetic DNA walker for molecular transport.
Jong-Shik Shin, Niles A Pierce. J Am Chem Soc 2004
423
6

Design of hidden thermodynamic driving for non-equilibrium systems via mismatch elimination during DNA strand displacement.
Natalie E C Haley, Thomas E Ouldridge, Ismael Mullor Ruiz, Alessandro Geraldini, Ard A Louis, Jonathan Bath, Andrew J Turberfield. Nat Commun 2020
27
22

Enzyme-free nucleic acid dynamical systems.
Niranjan Srinivas, James Parkin, Georg Seelig, Erik Winfree, David Soloveichik. Science 2017
116
6


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.