A citation-based method for searching scientific literature

Judith S Eisen, James C Smith. Development 2008
Times Cited: 437







List of co-cited articles
663 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Guidelines for morpholino use in zebrafish.
Didier Y R Stainier, Erez Raz, Nathan D Lawson, Stephen C Ekker, Rebecca D Burdine, Judith S Eisen, Philip W Ingham, Stefan Schulte-Merker, Deborah Yelon, Brant M Weinstein,[...]. PLoS Genet 2017
196
31

Genetic compensation induced by deleterious mutations but not gene knockdowns.
Andrea Rossi, Zacharias Kontarakis, Claudia Gerri, Hendrik Nolte, Soraya Hölper, Marcus Krüger, Didier Y R Stainier. Nature 2015
767
21

Effective targeted gene 'knockdown' in zebrafish.
A Nasevicius, S C Ekker. Nat Genet 2000
21

Reverse genetic screening reveals poor correlation between morpholino-induced and mutant phenotypes in zebrafish.
F O Kok, M Shin, C-W Ni, A Gupta, A S Grosse, A van Impel, B C Kirchmaier, J Peterson-Maduro, G Kourkoulis, I Male,[...]. Dev Cell 2015
508
19

A primer for morpholino use in zebrafish.
Brent R Bill, Andrew M Petzold, Karl J Clark, Lisa A Schimmenti, Stephen C Ekker. Zebrafish 2009
291
19

p53 activation by knockdown technologies.
Mara E Robu, Jon D Larson, Aidas Nasevicius, Soraya Beiraghi, Charles Brenner, Steven A Farber, Stephen C Ekker. PLoS Genet 2007
805
19

The zebrafish reference genome sequence and its relationship to the human genome.
Kerstin Howe, Matthew D Clark, Carlos F Torroja, James Torrance, Camille Berthelot, Matthieu Muffato, John E Collins, Sean Humphray, Karen McLaren, Lucy Matthews,[...]. Nature 2013
18

Morpholinos: Antisense and Sensibility.
Martin Blum, Edward M De Robertis, John B Wallingford, Christof Niehrs. Dev Cell 2015
129
16

Stages of embryonic development of the zebrafish.
C B Kimmel, W W Ballard, S R Kimmel, B Ullmann, T F Schilling. Dev Dyn 1995
15

Efficient genome editing in zebrafish using a CRISPR-Cas system.
Woong Y Hwang, Yanfang Fu, Deepak Reyon, Morgan L Maeder, Shengdar Q Tsai, Jeffry D Sander, Randall T Peterson, J-R Joanna Yeh, J Keith Joung. Nat Biotechnol 2013
13

Genetic compensation triggered by mutant mRNA degradation.
Mohamed A El-Brolosy, Zacharias Kontarakis, Andrea Rossi, Carsten Kuenne, Stefan Günther, Nana Fukuda, Khrievono Kikhi, Giulia L M Boezio, Carter M Takacs, Shih-Lei Lai,[...]. Nature 2019
452
10

Efficient multiplex biallelic zebrafish genome editing using a CRISPR nuclease system.
Li-En Jao, Susan R Wente, Wenbiao Chen. Proc Natl Acad Sci U S A 2013
808
8

Heritable targeted gene disruption in zebrafish using designed zinc-finger nucleases.
Yannick Doyon, Jasmine M McCammon, Jeffrey C Miller, Farhoud Faraji, Catherine Ngo, George E Katibah, Rainier Amora, Toby D Hocking, Lei Zhang, Edward J Rebar,[...]. Nat Biotechnol 2008
627
8

Estrogens Suppress a Behavioral Phenotype in Zebrafish Mutants of the Autism Risk Gene, CNTNAP2.
Ellen J Hoffman, Katherine J Turner, Joseph M Fernandez, Daniel Cifuentes, Marcus Ghosh, Sundas Ijaz, Roshan A Jain, Fumi Kubo, Brent R Bill, Herwig Baier,[...]. Neuron 2016
100
7

Disruptive CHD8 mutations define a subtype of autism early in development.
Raphael Bernier, Christelle Golzio, Bo Xiong, Holly A Stessman, Bradley P Coe, Osnat Penn, Kali Witherspoon, Jennifer Gerdts, Carl Baker, Anneke T Vulto-van Silfhout,[...]. Cell 2014
448
7

Lessons from morpholino-based screening in zebrafish.
Victoria M Bedell, Stephanie E Westcot, Stephen C Ekker. Brief Funct Genomics 2011
98
7

Multiplex genome engineering using CRISPR/Cas systems.
Le Cong, F Ann Ran, David Cox, Shuailiang Lin, Robert Barretto, Naomi Habib, Patrick D Hsu, Xuebing Wu, Wenyan Jiang, Luciano A Marraffini,[...]. Science 2013
7

Genetic compensation: A phenomenon in search of mechanisms.
Mohamed A El-Brolosy, Didier Y R Stainier. PLoS Genet 2017
407
7

Fiji: an open-source platform for biological-image analysis.
Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid,[...]. Nat Methods 2012
7

ZFN, TALEN, and CRISPR/Cas-based methods for genome engineering.
Thomas Gaj, Charles A Gersbach, Carlos F Barbas. Trends Biotechnol 2013
6

Morpholino antisense oligomers: design, preparation, and properties.
J Summerton, D Weller. Antisense Nucleic Acid Drug Dev 1997
755
6

CHD8 regulates neurodevelopmental pathways associated with autism spectrum disorder in neural progenitors.
Aarathi Sugathan, Marta Biagioli, Christelle Golzio, Serkan Erdin, Ian Blumenthal, Poornima Manavalan, Ashok Ragavendran, Harrison Brand, Diane Lucente, Judith Miles,[...]. Proc Natl Acad Sci U S A 2014
194
6

The first mecp2-null zebrafish model shows altered motor behaviors.
Thomas Pietri, Angel-Carlos Roman, Nicolas Guyon, Sebastián A Romano, Philip Washbourne, Cecilia B Moens, Gonzalo G de Polavieja, Germán Sumbre. Front Neural Circuits 2013
46
13

Two knockdown models of the autism genes SYNGAP1 and SHANK3 in zebrafish produce similar behavioral phenotypes associated with embryonic disruptions of brain morphogenesis.
Robert A Kozol, Holly N Cukier, Bing Zou, Vera Mayo, Silvia De Rubeis, Guiqing Cai, Anthony J Griswold, Patrice L Whitehead, Jonathan L Haines, John R Gilbert,[...]. Hum Mol Genet 2015
43
13

Highly efficient CRISPR/Cas9-mediated knock-in in zebrafish by homology-independent DNA repair.
Thomas O Auer, Karine Duroure, Anne De Cian, Jean-Paul Concordet, Filippo Del Bene. Genome Res 2014
411
6

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
6

A meckelin-filamin A interaction mediates ciliogenesis.
Matthew Adams, Roslyn J Simms, Zakia Abdelhamed, Helen R Dawe, Katarzyna Szymanska, Clare V Logan, Gabrielle Wheway, Eva Pitt, Keith Gull, Margaret A Knowles,[...]. Hum Mol Genet 2012
80
7


A genetic screen for mutations affecting embryogenesis in zebrafish.
W Driever, L Solnica-Krezel, A F Schier, S C Neuhauss, J Malicki, D L Stemple, D Y Stainier, F Zwartkruis, S Abdelilah, Z Rangini,[...]. Development 1996
917
6

Number of inadvertent RNA targets for morpholino knockdown in Danio rerio is largely underestimated: evidence from the study of Ser/Arg-rich splicing factors.
Marine Joris, Marie Schloesser, Denis Baurain, Marc Hanikenne, Marc Muller, Patrick Motte. Nucleic Acids Res 2017
22
27

CRISPR/Cas9-induced shank3b mutant zebrafish display autism-like behaviors.
Chun-Xue Liu, Chun-Yang Li, Chun-Chun Hu, Yi Wang, Jia Lin, Yong-Hui Jiang, Qiang Li, Xiu Xu. Mol Autism 2018
69
8

A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity.
Martin Jinek, Krzysztof Chylinski, Ines Fonfara, Michael Hauer, Jennifer A Doudna, Emmanuelle Charpentier. Science 2012
6

Zebrafish knockout of Down syndrome gene, DYRK1A, shows social impairments relevant to autism.
Oc-Hee Kim, Hyun-Ju Cho, Enna Han, Ted Inpyo Hong, Krishan Ariyasiri, Jung-Hwa Choi, Kyu-Seok Hwang, Yun-Mi Jeong, Se-Yeol Yang, Kweon Yu,[...]. Mol Autism 2017
52
11

Heritable gene targeting in zebrafish using customized TALENs.
Peng Huang, An Xiao, Mingguo Zhou, Zuoyan Zhu, Shuo Lin, Bo Zhang. Nat Biotechnol 2011
495
6

Function and regulation of AUTS2, a gene implicated in autism and human evolution.
Nir Oksenberg, Laurie Stevison, Jeffrey D Wall, Nadav Ahituv. PLoS Genet 2013
105
5


Drug screening in Scn1a zebrafish mutant identifies clemizole as a potential Dravet syndrome treatment.
Scott C Baraban, Matthew T Dinday, Gabriela A Hortopan. Nat Commun 2013
244
5

Targeted gene disruption in somatic zebrafish cells using engineered TALENs.
Jeffry D Sander, Lindsay Cade, Cyd Khayter, Deepak Reyon, Randall T Peterson, J Keith Joung, Jing-Ruey J Yeh. Nat Biotechnol 2011
433
5

Precise and efficient genome editing in zebrafish using the CRISPR/Cas9 system.
Uwe Irion, Jana Krauss, Christiane Nüsslein-Volhard. Development 2014
192
5

HTSeq--a Python framework to work with high-throughput sequencing data.
Simon Anders, Paul Theodor Pyl, Wolfgang Huber. Bioinformatics 2015
5

A genetic screen in zebrafish identifies cilia genes as a principal cause of cystic kidney.
Zhaoxia Sun, Adam Amsterdam, Gregory J Pazour, Douglas G Cole, Mark S Miller, Nancy Hopkins. Development 2004
394
5

Convergent extension movements and ciliary function are mediated by ofd1, a zebrafish orthologue of the human oral-facial-digital type 1 syndrome gene.
Maria I Ferrante, Leila Romio, Silvia Castro, John E Collins, David A Goulding, Derek L Stemple, Adrian S Woolf, Stephen W Wilson. Hum Mol Genet 2009
98
5

De novo loss-of-function mutations in CHD2 cause a fever-sensitive myoclonic epileptic encephalopathy sharing features with Dravet syndrome.
Arvid Suls, Johanna A Jaehn, Angela Kecskés, Yvonne Weber, Sarah Weckhuysen, Dana C Craiu, Aleksandra Siekierska, Tania Djémié, Tatiana Afrikanova, Padhraig Gormley,[...]. Am J Hum Genet 2013
132
5


Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans.
A Fire, S Xu, M K Montgomery, S A Kostas, S E Driver, C C Mello. Nature 1998
5

Zebrafish as tools for drug discovery.
Calum A MacRae, Randall T Peterson. Nat Rev Drug Discov 2015
590
5

Zebrafish models of autism spectrum disorder.
Daria A Meshalkina, Marina N Kizlyk, Elana V Kysil, Adam D Collier, David J Echevarria, Murilo S Abreu, Leonardo J G Barcellos, Cai Song, Jason E Warnick, Evan J Kyzar,[...]. Exp Neurol 2018
64
7

Methyl-CpG Binding Protein 2 (Mecp2) Regulates Sensory Function Through Sema5b and Robo2.
Wan Y Leong, Zhi H Lim, Vladimir Korzh, Thomas Pietri, Eyleen L K Goh. Front Cell Neurosci 2015
14
35


Efficient mutagenesis by Cas9 protein-mediated oligonucleotide insertion and large-scale assessment of single-guide RNAs.
James A Gagnon, Eivind Valen, Summer B Thyme, Peng Huang, Laila Akhmetova, Andrea Pauli, Tessa G Montague, Steven Zimmerman, Constance Richter, Alexander F Schier. PLoS One 2014
531
5


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.