A citation-based method for searching scientific literature

Qi-Long Ying, Jason Wray, Jennifer Nichols, Laura Batlle-Morera, Bradley Doble, James Woodgett, Philip Cohen, Austin Smith. Nature 2008
Times Cited: 2224







List of co-cited articles
719 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



New cell lines from mouse epiblast share defining features with human embryonic stem cells.
Paul J Tesar, Josh G Chenoweth, Frances A Brook, Timothy J Davies, Edward P Evans, David L Mack, Richard L Gardner, Ronald D G McKay. Nature 2007
26


Derivation of pluripotent epiblast stem cells from mammalian embryos.
I Gabrielle M Brons, Lucy E Smithers, Matthew W B Trotter, Peter Rugg-Gunn, Bowen Sun, Susana M Chuva de Sousa Lopes, Sarah K Howlett, Amanda Clarkson, Lars Ahrlund-Richter, Roger A Pedersen,[...]. Nature 2007
22

Naive and primed pluripotent states.
Jennifer Nichols, Austin Smith. Cell Stem Cell 2009
21



Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
15

Resetting transcription factor control circuitry toward ground-state pluripotency in human.
Yasuhiro Takashima, Ge Guo, Remco Loos, Jennifer Nichols, Gabriella Ficz, Felix Krueger, David Oxley, Fatima Santos, James Clarke, William Mansfield,[...]. Cell 2014
501
15

Inhibition of pluripotential embryonic stem cell differentiation by purified polypeptides.
A G Smith, J K Heath, D D Donaldson, G G Wong, J Moreau, M Stahl, D Rogers. Nature 1988
14

Embryonic stem cell lines derived from human blastocysts.
J A Thomson, J Itskovitz-Eldor, S S Shapiro, M A Waknitz, J J Swiergiel, V S Marshall, J M Jones. Science 1998
14

Myeloid leukaemia inhibitory factor maintains the developmental potential of embryonic stem cells.
R L Williams, D J Hilton, S Pease, T A Willson, C L Stewart, D P Gearing, E F Wagner, D Metcalf, N A Nicola, N M Gough. Nature 1988
13

Derivation of novel human ground state naive pluripotent stem cells.
Ohad Gafni, Leehee Weinberger, Abed AlFatah Mansour, Yair S Manor, Elad Chomsky, Dalit Ben-Yosef, Yael Kalma, Sergey Viukov, Itay Maza, Asaf Zviran,[...]. Nature 2013
656
13

Reconstitution of the mouse germ cell specification pathway in culture by pluripotent stem cells.
Katsuhiko Hayashi, Hiroshi Ohta, Kazuki Kurimoto, Shinya Aramaki, Mitinori Saitou. Cell 2011
711
12


The transcriptional and epigenomic foundations of ground state pluripotency.
Hendrik Marks, Tüzer Kalkan, Roberta Menafra, Sergey Denissov, Kenneth Jones, Helmut Hofemeister, Jennifer Nichols, Andrea Kranz, A Francis Stewart, Austin Smith,[...]. Cell 2012
564
11

The ability of inner-cell-mass cells to self-renew as embryonic stem cells is acquired following epiblast specification.
Thorsten Boroviak, Remco Loos, Paul Bertone, Austin Smith, Jennifer Nichols. Nat Cell Biol 2014
277
11


Embryonic stem cell potency fluctuates with endogenous retrovirus activity.
Todd S Macfarlan, Wesley D Gifford, Shawn Driscoll, Karen Lettieri, Helen M Rowe, Dario Bonanomi, Amy Firth, Oded Singer, Didier Trono, Samuel L Pfaff. Nature 2012
546
11

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
11

Capture of Mouse and Human Stem Cells with Features of Formative Pluripotency.
Masaki Kinoshita, Michael Barber, William Mansfield, Yingzhi Cui, Daniel Spindlow, Giuliano Giuseppe Stirparo, Sabine Dietmann, Jennifer Nichols, Austin Smith. Cell Stem Cell 2021
33
33

Inhibition of glycogen synthase kinase-3 alleviates Tcf3 repression of the pluripotency network and increases embryonic stem cell resistance to differentiation.
Jason Wray, Tüzer Kalkan, Sandra Gomez-Lopez, Dominik Eckardt, Andrew Cook, Rolf Kemler, Austin Smith. Nat Cell Biol 2011
356
11

The homeoprotein Nanog is required for maintenance of pluripotency in mouse epiblast and ES cells.
Kaoru Mitsui, Yoshimi Tokuzawa, Hiroaki Itoh, Kohichi Segawa, Mirei Murakami, Kazutoshi Takahashi, Masayoshi Maruyama, Mitsuyo Maeda, Shinya Yamanaka. Cell 2003
10


Induced pluripotent stem cell lines derived from human somatic cells.
Junying Yu, Maxim A Vodyanik, Kim Smuga-Otto, Jessica Antosiewicz-Bourget, Jennifer L Frane, Shulan Tian, Jeff Nie, Gudrun A Jonsdottir, Victor Ruotti, Ron Stewart,[...]. Science 2007
10

Derivation of Pluripotent Stem Cells with In Vivo Embryonic and Extraembryonic Potency.
Yang Yang, Bei Liu, Jun Xu, Jinlin Wang, Jun Wu, Cheng Shi, Yaxing Xu, Jiebin Dong, Chengyan Wang, Weifeng Lai,[...]. Cell 2017
195
10

Naive Pluripotent Stem Cells Derived Directly from Isolated Cells of the Human Inner Cell Mass.
Ge Guo, Ferdinand von Meyenn, Fatima Santos, Yaoyao Chen, Wolf Reik, Paul Bertone, Austin Smith, Jennifer Nichols. Stem Cell Reports 2016
187
9

Capture of authentic embryonic stem cells from rat blastocysts.
Mia Buehr, Stephen Meek, Kate Blair, Jian Yang, Janice Ure, Jose Silva, Renee McLay, John Hall, Qi-Long Ying, Austin Smith. Cell 2008
549
9

Systematic identification of culture conditions for induction and maintenance of naive human pluripotency.
Thorold W Theunissen, Benjamin E Powell, Haoyi Wang, Maya Mitalipova, Dina A Faddah, Jessica Reddy, Zi Peng Fan, Dorothea Maetzel, Kibibi Ganz, Linyu Shi,[...]. Cell Stem Cell 2014
447
9

Derivation of naive human embryonic stem cells.
Carol B Ware, Angelique M Nelson, Brigham Mecham, Jennifer Hesson, Wenyu Zhou, Erica C Jonlin, Antonio J Jimenez-Caliani, Xinxian Deng, Christopher Cavanaugh, Savannah Cook,[...]. Proc Natl Acad Sci U S A 2014
312
9

A signaling principle for the specification of the germ cell lineage in mice.
Yasuhide Ohinata, Hiroshi Ohta, Mayo Shigeta, Kaori Yamanaka, Teruhiko Wakayama, Mitinori Saitou. Cell 2009
305
9

A developmental coordinate of pluripotency among mice, monkeys and humans.
Tomonori Nakamura, Ikuhiro Okamoto, Kotaro Sasaki, Yukihiro Yabuta, Chizuru Iwatani, Hideaki Tsuchiya, Yasunari Seita, Shinichiro Nakamura, Takuya Yamamoto, Mitinori Saitou. Nature 2016
234
9

In vitro capture and characterization of embryonic rosette-stage pluripotency between naive and primed states.
Alex Neagu, Emiel van Genderen, Irene Escudero, Lucas Verwegen, Dorota Kurek, Johannes Lehmann, Jente Stel, René A M Dirks, Guido van Mierlo, Alex Maas,[...]. Nat Cell Biol 2020
33
27

Induction of pluripotent stem cells from adult human fibroblasts by defined factors.
Kazutoshi Takahashi, Koji Tanabe, Mari Ohnuki, Megumi Narita, Tomoko Ichisaka, Kiichiro Tomoda, Shinya Yamanaka. Cell 2007
8

Formation of pluripotent stem cells in the mammalian embryo depends on the POU transcription factor Oct4.
J Nichols, B Zevnik, K Anastassiadis, H Niwa, D Klewe-Nebenius, I Chambers, H Schöler, A Smith. Cell 1998
8

Establishment of porcine and human expanded potential stem cells.
Xuefei Gao, Monika Nowak-Imialek, Xi Chen, Dongsheng Chen, Doris Herrmann, Degong Ruan, Andy Chun Hang Chen, Melanie A Eckersley-Maslin, Shakil Ahmad, Yin Lau Lee,[...]. Nat Cell Biol 2019
105
8

Reorganization of enhancer patterns in transition from naive to primed pluripotency.
Christa Buecker, Rajini Srinivasan, Zhixiang Wu, Eliezer Calo, Dario Acampora, Tiago Faial, Antonio Simeone, Minjia Tan, Tomasz Swigut, Joanna Wysocka. Cell Stem Cell 2014
254
8

Esrrb is a pivotal target of the Gsk3/Tcf3 axis regulating embryonic stem cell self-renewal.
Graziano Martello, Toshimi Sugimoto, Evangelia Diamanti, Anagha Joshi, Rebecca Hannah, Satoshi Ohtsuka, Berthold Göttgens, Hitoshi Niwa, Austin Smith. Cell Stem Cell 2012
284
8

Prolonged Mek1/2 suppression impairs the developmental potential of embryonic stem cells.
Jiho Choi, Aaron J Huebner, Kendell Clement, Ryan M Walsh, Andrej Savol, Kaixuan Lin, Hongcang Gu, Bruno Di Stefano, Justin Brumbaugh, Sang-Yong Kim,[...]. Nature 2017
110
8

Single cell transcriptome analysis of human, marmoset and mouse embryos reveals common and divergent features of preimplantation development.
Thorsten Boroviak, Giuliano G Stirparo, Sabine Dietmann, Irene Hernando-Herraez, Hisham Mohammed, Wolf Reik, Austin Smith, Erika Sasaki, Jennifer Nichols, Paul Bertone. Development 2018
66
12

Nanog is the gateway to the pluripotent ground state.
Jose Silva, Jennifer Nichols, Thorold W Theunissen, Ge Guo, Anouk L van Oosten, Ornella Barrandon, Jason Wray, Shinya Yamanaka, Ian Chambers, Austin Smith. Cell 2009
687
8

Epigenetic resetting of human pluripotency.
Ge Guo, Ferdinand von Meyenn, Maria Rostovskaya, James Clarke, Sabine Dietmann, Duncan Baker, Anna Sahakyan, Samuel Myers, Paul Bertone, Wolf Reik,[...]. Development 2017
99
8

Mapping the route from naive pluripotency to lineage specification.
Tüzer Kalkan, Austin Smith. Philos Trans R Soc Lond B Biol Sci 2014
122
7

Whole-genome bisulfite sequencing of two distinct interconvertible DNA methylomes of mouse embryonic stem cells.
Ehsan Habibi, Arie B Brinkman, Julia Arand, Leonie I Kroeze, Hindrik H D Kerstens, Filomena Matarese, Konstantin Lepikhov, Marta Gut, Isabelle Brun-Heath, Nina C Hubner,[...]. Cell Stem Cell 2013
288
7

Derivation of ground-state female ES cells maintaining gamete-derived DNA methylation.
Masaki Yagi, Satoshi Kishigami, Akito Tanaka, Katsunori Semi, Eiji Mizutani, Sayaka Wakayama, Teruhiko Wakayama, Takuya Yamamoto, Yasuhiro Yamada. Nature 2017
93
7

Bmp4 is required for the generation of primordial germ cells in the mouse embryo.
K A Lawson, N R Dunn, B A Roelen, L M Zeinstra, A M Davis, C V Wright, J P Korving, B L Hogan. Genes Dev 1999
897
7

The nature of embryonic stem cells.
Graziano Martello, Austin Smith. Annu Rev Cell Dev Biol 2014
221
7

Germline competent embryonic stem cells derived from rat blastocysts.
Ping Li, Chang Tong, Ruty Mehrian-Shai, Li Jia, Nancy Wu, Youzhen Yan, Robert E Maxson, Eric N Schulze, Houyan Song, Chih-Lin Hsieh,[...]. Cell 2008
468
7

Lineage-Specific Profiling Delineates the Emergence and Progression of Naive Pluripotency in Mammalian Embryogenesis.
Thorsten Boroviak, Remco Loos, Patrick Lombard, Junko Okahara, Rüdiger Behr, Erika Sasaki, Jennifer Nichols, Austin Smith, Paul Bertone. Dev Cell 2015
208
7

Human embryonic stem cells with biological and epigenetic characteristics similar to those of mouse ESCs.
Jacob Hanna, Albert W Cheng, Krishanu Saha, Jongpil Kim, Christopher J Lengner, Frank Soldner, John P Cassady, Julien Muffat, Bryce W Carey, Rudolf Jaenisch. Proc Natl Acad Sci U S A 2010
587
7


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.