A E Dorr, J P Lerch, S Spring, N Kabani, R M Henkelman. Neuroimage 2008
Times Cited: 294
Times Cited: 294
Times Cited
Times Co-cited
Similarity
A segmentation protocol and MRI atlas of the C57BL/6J mouse neocortex.
Jeremy F P Ullmann, Charles Watson, Andrew L Janke, Nyoman D Kurniawan, David C Reutens. Neuroimage 2013
Jeremy F P Ullmann, Charles Watson, Andrew L Janke, Nyoman D Kurniawan, David C Reutens. Neuroimage 2013
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Genetic effects on cerebellar structure across mouse models of autism using a magnetic resonance imaging atlas.
Patrick E Steadman, Jacob Ellegood, Kamila U Szulc, Daniel H Turnbull, Alexandra L Joyner, R Mark Henkelman, Jason P Lerch. Autism Res 2014
Patrick E Steadman, Jacob Ellegood, Kamila U Szulc, Daniel H Turnbull, Alexandra L Joyner, R Mark Henkelman, Jason P Lerch. Autism Res 2014
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A reproducible evaluation of ANTs similarity metric performance in brain image registration.
Brian B Avants, Nicholas J Tustison, Gang Song, Philip A Cook, Arno Klein, James C Gee. Neuroimage 2011
Brian B Avants, Nicholas J Tustison, Gang Song, Philip A Cook, Arno Klein, James C Gee. Neuroimage 2011
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Thresholding of statistical maps in functional neuroimaging using the false discovery rate.
Christopher R Genovese, Nicole A Lazar, Thomas Nichols. Neuroimage 2002
Christopher R Genovese, Nicole A Lazar, Thomas Nichols. Neuroimage 2002
27
Partitioning k-space for cylindrical three-dimensional rapid acquisition with relaxation enhancement imaging in the mouse brain.
T Leigh Spencer Noakes, R Mark Henkelman, Brian J Nieman. NMR Biomed 2017
T Leigh Spencer Noakes, R Mark Henkelman, Brian J Nieman. NMR Biomed 2017
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Genome-wide atlas of gene expression in the adult mouse brain.
Ed S Lein, Michael J Hawrylycz, Nancy Ao, Mikael Ayres, Amy Bensinger, Amy Bernard, Andrew F Boe, Mark S Boguski, Kevin S Brockway, Emi J Byrnes,[...]. Nature 2007
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Symmetric diffeomorphic image registration with cross-correlation: evaluating automated labeling of elderly and neurodegenerative brain.
B B Avants, C L Epstein, M Grossman, J C Gee. Med Image Anal 2008
B B Avants, C L Epstein, M Grossman, J C Gee. Med Image Anal 2008
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Preparation of fixed mouse brains for MRI.
Lindsay S Cahill, Christine L Laliberté, Jacob Ellegood, Shoshana Spring, Jacqueline A Gleave, Matthijs C van Eede, Jason P Lerch, R Mark Henkelman. Neuroimage 2012
Lindsay S Cahill, Christine L Laliberté, Jacob Ellegood, Shoshana Spring, Jacqueline A Gleave, Matthijs C van Eede, Jason P Lerch, R Mark Henkelman. Neuroimage 2012
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Pydpiper: a flexible toolkit for constructing novel registration pipelines.
Miriam Friedel, Matthijs C van Eede, Jon Pipitone, M Mallar Chakravarty, Jason P Lerch. Front Neuroinform 2014
Miriam Friedel, Matthijs C van Eede, Jon Pipitone, M Mallar Chakravarty, Jason P Lerch. Front Neuroinform 2014
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Segmentation of the mouse hippocampal formation in magnetic resonance images.
Kay Richards, Charles Watson, Rachel F Buckley, Nyoman D Kurniawan, Zhengyi Yang, Marianne D Keller, Richard Beare, Perry F Bartlett, Gary F Egan, Graham J Galloway,[...]. Neuroimage 2011
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Performing label-fusion-based segmentation using multiple automatically generated templates.
M Mallar Chakravarty, Patrick Steadman, Matthijs C van Eede, Rebecca D Calcott, Victoria Gu, Philip Shaw, Armin Raznahan, D Louis Collins, Jason P Lerch. Hum Brain Mapp 2013
M Mallar Chakravarty, Patrick Steadman, Matthijs C van Eede, Rebecca D Calcott, Victoria Gu, Philip Shaw, Armin Raznahan, D Louis Collins, Jason P Lerch. Hum Brain Mapp 2013
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MRI to Assess Neurological Function.
Brian J Nieman, Matthijs C van Eede, Shoshana Spring, Jun Dazai, R Mark Henkelman, Jason P Lerch. Curr Protoc Mouse Biol 2018
Brian J Nieman, Matthijs C van Eede, Shoshana Spring, Jun Dazai, R Mark Henkelman, Jason P Lerch. Curr Protoc Mouse Biol 2018
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Anatomical phenotyping in the brain and skull of a mutant mouse by magnetic resonance imaging and computed tomography.
Brian J Nieman, Ann M Flenniken, S Lee Adamson, R Mark Henkelman, John G Sled. Physiol Genomics 2006
Brian J Nieman, Ann M Flenniken, S Lee Adamson, R Mark Henkelman, John G Sled. Physiol Genomics 2006
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Variations in post-perfusion immersion fixation and storage alter MRI measurements of mouse brain morphometry.
A Elizabeth de Guzman, Michael D Wong, Jacqueline A Gleave, Brian J Nieman. Neuroimage 2016
A Elizabeth de Guzman, Michael D Wong, Jacqueline A Gleave, Brian J Nieman. Neuroimage 2016
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A mesoscale connectome of the mouse brain.
Seung Wook Oh, Julie A Harris, Lydia Ng, Brent Winslow, Nicholas Cain, Stefan Mihalas, Quanxin Wang, Chris Lau, Leonard Kuan, Alex M Henry,[...]. Nature 2014
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MRI phenotyping of genetically altered mice.
Jason P Lerch, John G Sled, R Mark Henkelman. Methods Mol Biol 2011
Jason P Lerch, John G Sled, R Mark Henkelman. Methods Mol Biol 2011
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Waxholm space: an image-based reference for coordinating mouse brain research.
G Allan Johnson, Alexandra Badea, Jeffrey Brandenburg, Gary Cofer, Boma Fubara, Song Liu, Jonathan Nissanov. Neuroimage 2010
G Allan Johnson, Alexandra Badea, Jeffrey Brandenburg, Gary Cofer, Boma Fubara, Song Liu, Jonathan Nissanov. Neuroimage 2010
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Mouse MRI shows brain areas relatively larger in males emerge before those larger in females.
Lily R Qiu, Darren J Fernandes, Kamila U Szulc-Lerch, Jun Dazai, Brian J Nieman, Daniel H Turnbull, Jane A Foster, Mark R Palmert, Jason P Lerch. Nat Commun 2018
Lily R Qiu, Darren J Fernandes, Kamila U Szulc-Lerch, Jun Dazai, Brian J Nieman, Daniel H Turnbull, Jane A Foster, Mark R Palmert, Jason P Lerch. Nat Commun 2018
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Automatic 3D intersubject registration of MR volumetric data in standardized Talairach space.
D L Collins, P Neelin, T M Peters, A C Evans. J Comput Assist Tomogr 1994
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A three-dimensional MRI atlas of the mouse brain with estimates of the average and variability.
N Kovacević, J T Henderson, E Chan, N Lifshitz, J Bishop, A C Evans, R M Henkelman, X J Chen. Cereb Cortex 2005
N Kovacević, J T Henderson, E Chan, N Lifshitz, J Bishop, A C Evans, R M Henkelman, X J Chen. Cereb Cortex 2005
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AFNI: software for analysis and visualization of functional magnetic resonance neuroimages.
R W Cox. Comput Biomed Res 1996
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In vivo multiple-mouse MRI at 7 Tesla.
Nicholas A Bock, Brian J Nieman, Johnathan B Bishop, R Mark Henkelman. Magn Reson Med 2005
Nicholas A Bock, Brian J Nieman, Johnathan B Bishop, R Mark Henkelman. Magn Reson Med 2005
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Automated deformation analysis in the YAC128 Huntington disease mouse model.
Jason P Lerch, Jeffrey B Carroll, Shoshana Spring, Lisa N Bertram, Claudia Schwab, Michael R Hayden, R Mark Henkelman. Neuroimage 2008
Jason P Lerch, Jeffrey B Carroll, Shoshana Spring, Lisa N Bertram, Claudia Schwab, Michael R Hayden, R Mark Henkelman. Neuroimage 2008
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The Allen Mouse Brain Common Coordinate Framework: A 3D Reference Atlas.
Quanxin Wang, Song-Lin Ding, Yang Li, Josh Royall, David Feng, Phil Lesnar, Nile Graddis, Maitham Naeemi, Benjamin Facer, Anh Ho,[...]. Cell 2020
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Optimization of anesthesia protocol for resting-state fMRI in mice based on differential effects of anesthetics on functional connectivity patterns.
Joanes Grandjean, Aileen Schroeter, Imene Batata, Markus Rudin. Neuroimage 2014
Joanes Grandjean, Aileen Schroeter, Imene Batata, Markus Rudin. Neuroimage 2014
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Multiple-mouse neuroanatomical magnetic resonance imaging.
Jun Dazai, Shoshana Spring, Lindsay S Cahill, R Mark Henkelman. J Vis Exp 2011
Jun Dazai, Shoshana Spring, Lindsay S Cahill, R Mark Henkelman. J Vis Exp 2011
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Fiji: an open-source platform for biological-image analysis.
Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid,[...]. Nat Methods 2012
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A three-dimensional digital atlas database of the adult C57BL/6J mouse brain by magnetic resonance microscopy.
Y Ma, P R Hof, S C Grant, S J Blackband, R Bennett, L Slatest, M D McGuigan, H Benveniste. Neuroscience 2005
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Neuroinformatics of the Allen Mouse Brain Connectivity Atlas.
Leonard Kuan, Yang Li, Chris Lau, David Feng, Amy Bernard, Susan M Sunkin, Hongkui Zeng, Chinh Dang, Michael Hawrylycz, Lydia Ng. Methods 2015
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Common functional networks in the mouse brain revealed by multi-centre resting-state fMRI analysis.
Joanes Grandjean, Carola Canella, Cynthia Anckaerts, Gülebru Ayrancı, Salma Bougacha, Thomas Bienert, David Buehlmann, Ludovico Coletta, Daniel Gallino, Natalia Gass,[...]. Neuroimage 2020
Joanes Grandjean, Carola Canella, Cynthia Anckaerts, Gülebru Ayrancı, Salma Bougacha, Thomas Bienert, David Buehlmann, Ludovico Coletta, Daniel Gallino, Natalia Gass,[...]. Neuroimage 2020
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In Vivo 3D Digital Atlas Database of the Adult C57BL/6J Mouse Brain by Magnetic Resonance Microscopy.
Yu Ma, David Smith, Patrick R Hof, Bernd Foerster, Scott Hamilton, Stephen J Blackband, Mei Yu, Helene Benveniste. Front Neuroanat 2008
Yu Ma, David Smith, Patrick R Hof, Bernd Foerster, Scott Hamilton, Stephen J Blackband, Mei Yu, Helene Benveniste. Front Neuroanat 2008
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Spatial gene expression analysis of neuroanatomical differences in mouse models.
Darren J Fernandes, Jacob Ellegood, Rand Askalan, Randy D Blakely, Emanuel Dicicco-Bloom, Sean E Egan, Lucy R Osborne, Craig M Powell, Armin Raznahan, Diane M Robins,[...]. Neuroimage 2017
Darren J Fernandes, Jacob Ellegood, Rand Askalan, Randy D Blakely, Emanuel Dicicco-Bloom, Sean E Egan, Lucy R Osborne, Craig M Powell, Armin Raznahan, Diane M Robins,[...]. Neuroimage 2017
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FSL.
Mark Jenkinson, Christian F Beckmann, Timothy E J Behrens, Mark W Woolrich, Stephen M Smith. Neuroimage 2012
Mark Jenkinson, Christian F Beckmann, Timothy E J Behrens, Mark W Woolrich, Stephen M Smith. Neuroimage 2012
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User-guided 3D active contour segmentation of anatomical structures: significantly improved efficiency and reliability.
Paul A Yushkevich, Joseph Piven, Heather Cody Hazlett, Rachel Gimpel Smith, Sean Ho, James C Gee, Guido Gerig. Neuroimage 2006
Paul A Yushkevich, Joseph Piven, Heather Cody Hazlett, Rachel Gimpel Smith, Sean Ho, James C Gee, Guido Gerig. Neuroimage 2006
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Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
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N4ITK: improved N3 bias correction.
Nicholas J Tustison, Brian B Avants, Philip A Cook, Yuanjie Zheng, Alexander Egan, Paul A Yushkevich, James C Gee. IEEE Trans Med Imaging 2010
Nicholas J Tustison, Brian B Avants, Philip A Cook, Yuanjie Zheng, Alexander Egan, Paul A Yushkevich, James C Gee. IEEE Trans Med Imaging 2010
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Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration.
Arno Klein, Jesper Andersson, Babak A Ardekani, John Ashburner, Brian Avants, Ming-Chang Chiang, Gary E Christensen, D Louis Collins, James Gee, Pierre Hellier,[...]. Neuroimage 2009
Arno Klein, Jesper Andersson, Babak A Ardekani, John Ashburner, Brian Avants, Ming-Chang Chiang, Gary E Christensen, D Louis Collins, James Gee, Pierre Hellier,[...]. Neuroimage 2009
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elastix: a toolbox for intensity-based medical image registration.
Stefan Klein, Marius Staring, Keelin Murphy, Max A Viergever, Josien P W Pluim. IEEE Trans Med Imaging 2010
Stefan Klein, Marius Staring, Keelin Murphy, Max A Viergever, Josien P W Pluim. IEEE Trans Med Imaging 2010
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A perfusion procedure for imaging of the mouse cerebral vasculature by X-ray micro-CT.
Sahar Ghanavati, Lisa X Yu, Jason P Lerch, John G Sled. J Neurosci Methods 2014
Sahar Ghanavati, Lisa X Yu, Jason P Lerch, John G Sled. J Neurosci Methods 2014
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Structural Basis of Large-Scale Functional Connectivity in the Mouse.
Joanes Grandjean, Valerio Zerbi, Joshua Henk Balsters, Nicole Wenderoth, Markus Rudin. J Neurosci 2017
Joanes Grandjean, Valerio Zerbi, Joshua Henk Balsters, Nicole Wenderoth, Markus Rudin. J Neurosci 2017
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Serial two-photon tomography for automated ex vivo mouse brain imaging.
Timothy Ragan, Lolahon R Kadiri, Kannan Umadevi Venkataraju, Karsten Bahlmann, Jason Sutin, Julian Taranda, Ignacio Arganda-Carreras, Yongsoo Kim, H Sebastian Seung, Pavel Osten. Nat Methods 2012
Timothy Ragan, Lolahon R Kadiri, Kannan Umadevi Venkataraju, Karsten Bahlmann, Jason Sutin, Julian Taranda, Ignacio Arganda-Carreras, Yongsoo Kim, H Sebastian Seung, Pavel Osten. Nat Methods 2012
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Allen Brain Atlas: an integrated spatio-temporal portal for exploring the central nervous system.
Susan M Sunkin, Lydia Ng, Chris Lau, Tim Dolbeare, Terri L Gilbert, Carol L Thompson, Michael Hawrylycz, Chinh Dang. Nucleic Acids Res 2013
Susan M Sunkin, Lydia Ng, Chris Lau, Tim Dolbeare, Terri L Gilbert, Carol L Thompson, Michael Hawrylycz, Chinh Dang. Nucleic Acids Res 2013
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Mapping of Brain Activity by Automated Volume Analysis of Immediate Early Genes.
Nicolas Renier, Eliza L Adams, Christoph Kirst, Zhuhao Wu, Ricardo Azevedo, Johannes Kohl, Anita E Autry, Lolahon Kadiri, Kannan Umadevi Venkataraju, Yu Zhou,[...]. Cell 2016
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Cortical thickness measured from MRI in the YAC128 mouse model of Huntington's disease.
Jason P Lerch, Jeffrey B Carroll, Adrienne Dorr, Shoshana Spring, Alan C Evans, Michael R Hayden, John G Sled, R Mark Henkelman. Neuroimage 2008
Jason P Lerch, Jeffrey B Carroll, Adrienne Dorr, Shoshana Spring, Alan C Evans, Michael R Hayden, John G Sled, R Mark Henkelman. Neuroimage 2008
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Robust methods to create ex vivo minimum deformation atlases for brain mapping.
Andrew L Janke, Jeremy F P Ullmann. Methods 2015
Andrew L Janke, Jeremy F P Ullmann. Methods 2015
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Complex network measures of brain connectivity: uses and interpretations.
Mikail Rubinov, Olaf Sporns. Neuroimage 2010
Mikail Rubinov, Olaf Sporns. Neuroimage 2010
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On the Usage of Brain Atlases in Neuroimaging Research.
Andreas Hess, Rukun Hinz, Georgios A Keliris, Philipp Boehm-Sturm. Mol Imaging Biol 2018
Andreas Hess, Rukun Hinz, Georgios A Keliris, Philipp Boehm-Sturm. Mol Imaging Biol 2018
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Hierarchical organization of cortical and thalamic connectivity.
Julie A Harris, Stefan Mihalas, Karla E Hirokawa, Jennifer D Whitesell, Hannah Choi, Amy Bernard, Phillip Bohn, Shiella Caldejon, Linzy Casal, Andrew Cho,[...]. Nature 2019
Julie A Harris, Stefan Mihalas, Karla E Hirokawa, Jennifer D Whitesell, Hannah Choi, Amy Bernard, Phillip Bohn, Shiella Caldejon, Linzy Casal, Andrew Cho,[...]. Nature 2019
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A robust and high-throughput Cre reporting and characterization system for the whole mouse brain.
Linda Madisen, Theresa A Zwingman, Susan M Sunkin, Seung Wook Oh, Hatim A Zariwala, Hong Gu, Lydia L Ng, Richard D Palmiter, Michael J Hawrylycz, Allan R Jones,[...]. Nat Neurosci 2010
Linda Madisen, Theresa A Zwingman, Susan M Sunkin, Seung Wook Oh, Hatim A Zariwala, Hong Gu, Lydia L Ng, Richard D Palmiter, Michael J Hawrylycz, Allan R Jones,[...]. Nat Neurosci 2010
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Enhanced and unified anatomical labeling for a common mouse brain atlas.
Uree Chon, Daniel J Vanselow, Keith C Cheng, Yongsoo Kim. Nat Commun 2019
Uree Chon, Daniel J Vanselow, Keith C Cheng, Yongsoo Kim. Nat Commun 2019
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Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.