A citation-based method for searching scientific literature

A E Dorr, J P Lerch, S Spring, N Kabani, R M Henkelman. Neuroimage 2008
Times Cited: 294







List of co-cited articles
510 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


A segmentation protocol and MRI atlas of the C57BL/6J mouse neocortex.
Jeremy F P Ullmann, Charles Watson, Andrew L Janke, Nyoman D Kurniawan, David C Reutens. Neuroimage 2013
112
32

Genetic effects on cerebellar structure across mouse models of autism using a magnetic resonance imaging atlas.
Patrick E Steadman, Jacob Ellegood, Kamila U Szulc, Daniel H Turnbull, Alexandra L Joyner, R Mark Henkelman, Jason P Lerch. Autism Res 2014
83
37

A reproducible evaluation of ANTs similarity metric performance in brain image registration.
Brian B Avants, Nicholas J Tustison, Gang Song, Philip A Cook, Arno Klein, James C Gee. Neuroimage 2011
27

Thresholding of statistical maps in functional neuroimaging using the false discovery rate.
Christopher R Genovese, Nicole A Lazar, Thomas Nichols. Neuroimage 2002
27


Genome-wide atlas of gene expression in the adult mouse brain.
Ed S Lein, Michael J Hawrylycz, Nancy Ao, Mikael Ayres, Amy Bensinger, Amy Bernard, Andrew F Boe, Mark S Boguski, Kevin S Brockway, Emi J Byrnes,[...]. Nature 2007
23


Preparation of fixed mouse brains for MRI.
Lindsay S Cahill, Christine L Laliberté, Jacob Ellegood, Shoshana Spring, Jacqueline A Gleave, Matthijs C van Eede, Jason P Lerch, R Mark Henkelman. Neuroimage 2012
85
22

Pydpiper: a flexible toolkit for constructing novel registration pipelines.
Miriam Friedel, Matthijs C van Eede, Jon Pipitone, M Mallar Chakravarty, Jason P Lerch. Front Neuroinform 2014
56
32

Segmentation of the mouse hippocampal formation in magnetic resonance images.
Kay Richards, Charles Watson, Rachel F Buckley, Nyoman D Kurniawan, Zhengyi Yang, Marianne D Keller, Richard Beare, Perry F Bartlett, Gary F Egan, Graham J Galloway,[...]. Neuroimage 2011
43
41

Performing label-fusion-based segmentation using multiple automatically generated templates.
M Mallar Chakravarty, Patrick Steadman, Matthijs C van Eede, Rebecca D Calcott, Victoria Gu, Philip Shaw, Armin Raznahan, D Louis Collins, Jason P Lerch. Hum Brain Mapp 2013
216
17

MRI to Assess Neurological Function.
Brian J Nieman, Matthijs C van Eede, Shoshana Spring, Jun Dazai, R Mark Henkelman, Jason P Lerch. Curr Protoc Mouse Biol 2018
20
85

Anatomical phenotyping in the brain and skull of a mutant mouse by magnetic resonance imaging and computed tomography.
Brian J Nieman, Ann M Flenniken, S Lee Adamson, R Mark Henkelman, John G Sled. Physiol Genomics 2006
89
15

Variations in post-perfusion immersion fixation and storage alter MRI measurements of mouse brain morphometry.
A Elizabeth de Guzman, Michael D Wong, Jacqueline A Gleave, Brian J Nieman. Neuroimage 2016
36
38

A mesoscale connectome of the mouse brain.
Seung Wook Oh, Julie A Harris, Lydia Ng, Brent Winslow, Nicholas Cain, Stefan Mihalas, Quanxin Wang, Chris Lau, Leonard Kuan, Alex M Henry,[...]. Nature 2014
14

MRI phenotyping of genetically altered mice.
Jason P Lerch, John G Sled, R Mark Henkelman. Methods Mol Biol 2011
95
12

Waxholm space: an image-based reference for coordinating mouse brain research.
G Allan Johnson, Alexandra Badea, Jeffrey Brandenburg, Gary Cofer, Boma Fubara, Song Liu, Jonathan Nissanov. Neuroimage 2010
168
12

Mouse MRI shows brain areas relatively larger in males emerge before those larger in females.
Lily R Qiu, Darren J Fernandes, Kamila U Szulc-Lerch, Jun Dazai, Brian J Nieman, Daniel H Turnbull, Jane A Foster, Mark R Palmert, Jason P Lerch. Nat Commun 2018
42
28

Automatic 3D intersubject registration of MR volumetric data in standardized Talairach space.
D L Collins, P Neelin, T M Peters, A C Evans. J Comput Assist Tomogr 1994
11

A three-dimensional MRI atlas of the mouse brain with estimates of the average and variability.
N Kovacević, J T Henderson, E Chan, N Lifshitz, J Bishop, A C Evans, R M Henkelman, X J Chen. Cereb Cortex 2005
241
11


In vivo multiple-mouse MRI at 7 Tesla.
Nicholas A Bock, Brian J Nieman, Johnathan B Bishop, R Mark Henkelman. Magn Reson Med 2005
71
12

Automated deformation analysis in the YAC128 Huntington disease mouse model.
Jason P Lerch, Jeffrey B Carroll, Shoshana Spring, Lisa N Bertram, Claudia Schwab, Michael R Hayden, R Mark Henkelman. Neuroimage 2008
133
9

The Allen Mouse Brain Common Coordinate Framework: A 3D Reference Atlas.
Quanxin Wang, Song-Lin Ding, Yang Li, Josh Royall, David Feng, Phil Lesnar, Nile Graddis, Maitham Naeemi, Benjamin Facer, Anh Ho,[...]. Cell 2020
166
9


Multiple-mouse neuroanatomical magnetic resonance imaging.
Jun Dazai, Shoshana Spring, Lindsay S Cahill, R Mark Henkelman. J Vis Exp 2011
35
20

Fiji: an open-source platform for biological-image analysis.
Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid,[...]. Nat Methods 2012
7

A three-dimensional digital atlas database of the adult C57BL/6J mouse brain by magnetic resonance microscopy.
Y Ma, P R Hof, S C Grant, S J Blackband, R Bennett, L Slatest, M D McGuigan, H Benveniste. Neuroscience 2005
279
6

Neuroinformatics of the Allen Mouse Brain Connectivity Atlas.
Leonard Kuan, Yang Li, Chris Lau, David Feng, Amy Bernard, Susan M Sunkin, Hongkui Zeng, Chinh Dang, Michael Hawrylycz, Lydia Ng. Methods 2015
101
6

Common functional networks in the mouse brain revealed by multi-centre resting-state fMRI analysis.
Joanes Grandjean, Carola Canella, Cynthia Anckaerts, Gülebru Ayrancı, Salma Bougacha, Thomas Bienert, David Buehlmann, Ludovico Coletta, Daniel Gallino, Natalia Gass,[...]. Neuroimage 2020
69
8

In Vivo 3D Digital Atlas Database of the Adult C57BL/6J Mouse Brain by Magnetic Resonance Microscopy.
Yu Ma, David Smith, Patrick R Hof, Bernd Foerster, Scott Hamilton, Stephen J Blackband, Mei Yu, Helene Benveniste. Front Neuroanat 2008
133
6

Spatial gene expression analysis of neuroanatomical differences in mouse models.
Darren J Fernandes, Jacob Ellegood, Rand Askalan, Randy D Blakely, Emanuel Dicicco-Bloom, Sean E Egan, Lucy R Osborne, Craig M Powell, Armin Raznahan, Diane M Robins,[...]. Neuroimage 2017
12
50

FSL.
Mark Jenkinson, Christian F Beckmann, Timothy E J Behrens, Mark W Woolrich, Stephen M Smith. Neuroimage 2012
6

User-guided 3D active contour segmentation of anatomical structures: significantly improved efficiency and reliability.
Paul A Yushkevich, Joseph Piven, Heather Cody Hazlett, Rachel Gimpel Smith, Sean Ho, James C Gee, Guido Gerig. Neuroimage 2006
5

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
5

N4ITK: improved N3 bias correction.
Nicholas J Tustison, Brian B Avants, Philip A Cook, Yuanjie Zheng, Alexander Egan, Paul A Yushkevich, James C Gee. IEEE Trans Med Imaging 2010
5

Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration.
Arno Klein, Jesper Andersson, Babak A Ardekani, John Ashburner, Brian Avants, Ming-Chang Chiang, Gary E Christensen, D Louis Collins, James Gee, Pierre Hellier,[...]. Neuroimage 2009
5

elastix: a toolbox for intensity-based medical image registration.
Stefan Klein, Marius Staring, Keelin Murphy, Max A Viergever, Josien P W Pluim. IEEE Trans Med Imaging 2010
5

A perfusion procedure for imaging of the mouse cerebral vasculature by X-ray micro-CT.
Sahar Ghanavati, Lisa X Yu, Jason P Lerch, John G Sled. J Neurosci Methods 2014
54
9

Structural Basis of Large-Scale Functional Connectivity in the Mouse.
Joanes Grandjean, Valerio Zerbi, Joshua Henk Balsters, Nicole Wenderoth, Markus Rudin. J Neurosci 2017
64
7

Serial two-photon tomography for automated ex vivo mouse brain imaging.
Timothy Ragan, Lolahon R Kadiri, Kannan Umadevi Venkataraju, Karsten Bahlmann, Jason Sutin, Julian Taranda, Ignacio Arganda-Carreras, Yongsoo Kim, H Sebastian Seung, Pavel Osten. Nat Methods 2012
339
5

Allen Brain Atlas: an integrated spatio-temporal portal for exploring the central nervous system.
Susan M Sunkin, Lydia Ng, Chris Lau, Tim Dolbeare, Terri L Gilbert, Carol L Thompson, Michael Hawrylycz, Chinh Dang. Nucleic Acids Res 2013
311
5

Mapping of Brain Activity by Automated Volume Analysis of Immediate Early Genes.
Nicolas Renier, Eliza L Adams, Christoph Kirst, Zhuhao Wu, Ricardo Azevedo, Johannes Kohl, Anita E Autry, Lolahon Kadiri, Kannan Umadevi Venkataraju, Yu Zhou,[...]. Cell 2016
333
5

Cortical thickness measured from MRI in the YAC128 mouse model of Huntington's disease.
Jason P Lerch, Jeffrey B Carroll, Adrienne Dorr, Shoshana Spring, Alan C Evans, Michael R Hayden, John G Sled, R Mark Henkelman. Neuroimage 2008
84
5



On the Usage of Brain Atlases in Neuroimaging Research.
Andreas Hess, Rukun Hinz, Georgios A Keliris, Philipp Boehm-Sturm. Mol Imaging Biol 2018
14
35

Hierarchical organization of cortical and thalamic connectivity.
Julie A Harris, Stefan Mihalas, Karla E Hirokawa, Jennifer D Whitesell, Hannah Choi, Amy Bernard, Phillip Bohn, Shiella Caldejon, Linzy Casal, Andrew Cho,[...]. Nature 2019
126
5

A robust and high-throughput Cre reporting and characterization system for the whole mouse brain.
Linda Madisen, Theresa A Zwingman, Susan M Sunkin, Seung Wook Oh, Hatim A Zariwala, Hong Gu, Lydia L Ng, Richard D Palmiter, Michael J Hawrylycz, Allan R Jones,[...]. Nat Neurosci 2010
5

Enhanced and unified anatomical labeling for a common mouse brain atlas.
Uree Chon, Daniel J Vanselow, Keith C Cheng, Yongsoo Kim. Nat Commun 2019
36
13


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.