A citation-based method for searching scientific literature

C L Noble, A R Abbas, J Cornelius, C W Lees, G-T Ho, K Toy, Z Modrusan, N Pal, F Zhong, S Chalasani, H Clark, I D Arnott, I D Penman, J Satsangi, L Diehl. Gut 2008
Times Cited: 122







List of co-cited articles
720 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



Characterization of intestinal gene expression profiles in Crohn's disease by genome-wide microarray analysis.
Colin L Noble, Alexander R Abbas, Charles W Lees, Jennine Cornelius, Karen Toy, Zora Modrusan, Hilary F Clark, Ian D Arnott, Ian D Penman, Jack Satsangi,[...]. Inflamm Bowel Dis 2010
54
35


Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.
Luke Jostins, Stephan Ripke, Rinse K Weersma, Richard H Duerr, Dermot P McGovern, Ken Y Hui, James C Lee, L Philip Schumm, Yashoda Sharma, Carl A Anderson,[...]. Nature 2012
18

Genome-wide gene expression differences in Crohn's disease and ulcerative colitis from endoscopic pinch biopsies: insights into distinctive pathogenesis.
Feng Wu, Themistocles Dassopoulos, Leslie Cope, Anirban Maitra, Steven R Brant, Mary L Harris, Theodore M Bayless, Giovanni Parmigiani, Shukti Chakravarti. Inflamm Bowel Dis 2007
186
17

Diagnosis of ulcerative colitis before onset of inflammation by multivariate modeling of genome-wide gene expression data.
Jørgen Olsen, Thomas A Gerds, Jakob B Seidelin, Claudio Csillag, Jacob T Bjerrum, Jesper T Troelsen, Ole Haagen Nielsen. Inflamm Bowel Dis 2009
75
20

Transcriptional analysis of the intestinal mucosa of patients with ulcerative colitis in remission reveals lasting epithelial cell alterations.
Núria Planell, Juan J Lozano, Rut Mora-Buch, M Carme Masamunt, Mireya Jimeno, Ingrid Ordás, Miriam Esteller, Elena Ricart, Josep M Piqué, Julián Panés,[...]. Gut 2013
129
13

Mucosal gene expression of antimicrobial peptides in inflammatory bowel disease before and after first infliximab treatment.
Ingrid Arijs, Gert De Hertogh, Katleen Lemaire, Roel Quintens, Leentje Van Lommel, Kristel Van Steen, Peter Leemans, Isabelle Cleynen, Gert Van Assche, Séverine Vermeire,[...]. PLoS One 2009
133
10

Dissection of the inflammatory bowel disease transcriptome using genome-wide cDNA microarrays.
Christine M Costello, Nancy Mah, Robert Häsler, Philip Rosenstiel, Georg H Waetzig, Andreas Hahn, Tim Lu, Yesim Gurbuz, Susanna Nikolaus, Mario Albrecht,[...]. PLoS Med 2005
153
10

Inflammatory gene signature in ulcerative colitis with cDNA macroarray analysis.
S Okahara, Y Arimura, T Yabana, K Kobayashi, A Gotoh, S Motoya, A Imamura, T Endo, K Imai. Aliment Pharmacol Ther 2005
38
23

Gene Expression Omnibus: NCBI gene expression and hybridization array data repository.
Ron Edgar, Michael Domrachev, Alex E Lash. Nucleic Acids Res 2002
9

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources.
Da Wei Huang, Brad T Sherman, Richard A Lempicki. Nat Protoc 2009
9

Analysis of mucosal gene expression in inflammatory bowel disease by parallel oligonucleotide arrays.
B K Dieckgraefe, W F Stenson, J R Korzenik, P E Swanson, C A Harrington. Physiol Genomics 2000
154
9

Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.
Carl A Anderson, Gabrielle Boucher, Charlie W Lees, Andre Franke, Mauro D'Amato, Kent D Taylor, James C Lee, Philippe Goyette, Marcin Imielinski, Anna Latiano,[...]. Nat Genet 2011
918
9

Bioconductor: open software development for computational biology and bioinformatics.
Robert C Gentleman, Vincent J Carey, Douglas M Bates, Ben Bolstad, Marcel Dettling, Sandrine Dudoit, Byron Ellis, Laurent Gautier, Yongchao Ge, Jeff Gentry,[...]. Genome Biol 2004
8

Inflammatory bowel disease.
Clara Abraham, Judy H Cho. N Engl J Med 2009
8


MicroRNAs are differentially expressed in ulcerative colitis and alter expression of macrophage inflammatory peptide-2 alpha.
Feng Wu, Michelle Zikusoka, Anil Trindade, Themistocles Dassopoulos, Mary L Harris, Theodore M Bayless, Steven R Brant, Shukti Chakravarti, John H Kwon. Gastroenterology 2008
375
7


Increasing incidence and prevalence of the inflammatory bowel diseases with time, based on systematic review.
Natalie A Molodecky, Ing Shian Soon, Doreen M Rabi, William A Ghali, Mollie Ferris, Greg Chernoff, Eric I Benchimol, Remo Panaccione, Subrata Ghosh, Herman W Barkema,[...]. Gastroenterology 2012
7


Mucosal gene expression of cell adhesion molecules, chemokines, and chemokine receptors in patients with inflammatory bowel disease before and after infliximab treatment.
Ingrid Arijs, Gert De Hertogh, Kathleen Machiels, Kristel Van Steen, Katleen Lemaire, Anica Schraenen, Leentje Van Lommel, Roel Quintens, Gert Van Assche, Séverine Vermeire,[...]. Am J Gastroenterol 2011
105
7

WGCNA: an R package for weighted correlation network analysis.
Peter Langfelder, Steve Horvath. BMC Bioinformatics 2008
7

Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.
Jimmy Z Liu, Suzanne van Sommeren, Hailiang Huang, Siew C Ng, Rudi Alberts, Atsushi Takahashi, Stephan Ripke, James C Lee, Luke Jostins, Tejas Shah,[...]. Nat Genet 2015
985
7

Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.
Andre Franke, Dermot P B McGovern, Jeffrey C Barrett, Kai Wang, Graham L Radford-Smith, Tariq Ahmad, Charlie W Lees, Tobias Balschun, James Lee, Rebecca Roberts,[...]. Nat Genet 2010
6

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.
Aravind Subramanian, Pablo Tamayo, Vamsi K Mootha, Sayan Mukherjee, Benjamin L Ebert, Michael A Gillette, Amanda Paulovich, Scott L Pomeroy, Todd R Golub, Eric S Lander,[...]. Proc Natl Acad Sci U S A 2005
6

Infliximab for induction and maintenance therapy for ulcerative colitis.
Paul Rutgeerts, William J Sandborn, Brian G Feagan, Walter Reinisch, Allan Olson, Jewel Johanns, Suzanne Travers, Daniel Rachmilewitz, Stephen B Hanauer, Gary R Lichtenstein,[...]. N Engl J Med 2005
6

Activation of an IL-6:STAT3-dependent transcriptome in pediatric-onset inflammatory bowel disease.
Rebecca Carey, Ingrid Jurickova, Edgar Ballard, Erin Bonkowski, Xiaonan Han, Huan Xu, Lee A Denson. Inflamm Bowel Dis 2008
99
6

Increased expression of microRNA in the inflamed colonic mucosa of patients with active ulcerative colitis.
Tomohisa Takagi, Yuji Naito, Katsura Mizushima, Ikuhiro Hirata, Nobuaki Yagi, Naoya Tomatsuri, Takashi Ando, Yuichi Oyamada, Yutaka Isozaki, Hitoshi Hongo,[...]. J Gastroenterol Hepatol 2010
136
6


Loss of detoxification in inflammatory bowel disease: dysregulation of pregnane X receptor target genes.
Thomas Langmann, Christoph Moehle, Richard Mauerer, Michael Scharl, Gerhard Liebisch, Alexandra Zahn, Wolfgang Stremmel, Gerd Schmitz. Gastroenterology 2004
256
6

Genetics and pathogenesis of inflammatory bowel disease.
Bernard Khor, Agnès Gardet, Ramnik J Xavier. Nature 2011
6

Molecular classification of Crohn's disease and ulcerative colitis patients using transcriptional profiles in peripheral blood mononuclear cells.
Michael E Burczynski, Ron L Peterson, Natalie C Twine, Krystyna A Zuberek, Brendan J Brodeur, Lori Casciotti, Vasu Maganti, Padma S Reddy, Andrew Strahs, Fred Immermann,[...]. J Mol Diagn 2006
112
6

Comparative analysis of colonic gene expression of three experimental colitis models mimicking inflammatory bowel disease.
Anje A te Velde, Floor de Kort, Ellen Sterrenburg, Inge Pronk, Fiebo J W ten Kate, Daniel W Hommes, Sander J H van Deventer. Inflamm Bowel Dis 2007
118
6

Loci on 20q13 and 21q22 are associated with pediatric-onset inflammatory bowel disease.
Subra Kugathasan, Robert N Baldassano, Jonathan P Bradfield, Patrick M A Sleiman, Marcin Imielinski, Stephen L Guthery, Salvatore Cucchiara, Cecilia E Kim, Edward C Frackelton, Kiran Annaiah,[...]. Nat Genet 2008
240
5

Genome-wide association identifies multiple ulcerative colitis susceptibility loci.
Dermot P B McGovern, Agnès Gardet, Leif Törkvist, Philippe Goyette, Jonah Essers, Kent D Taylor, Benjamin M Neale, Rick T H Ong, Caroline Lagacé, Chun Li,[...]. Nat Genet 2010
451
5


A genome-wide association study identifies IL23R as an inflammatory bowel disease gene.
Richard H Duerr, Kent D Taylor, Steven R Brant, John D Rioux, Mark S Silverberg, Mark J Daly, A Hillary Steinhart, Clara Abraham, Miguel Regueiro, Anne Griffiths,[...]. Science 2006
5

A reproducible grading scale for histological assessment of inflammation in ulcerative colitis.
K Geboes, R Riddell, A Ost, B Jensfelt, T Persson, R Löfberg. Gut 2000
497
5

Mucosal gene signatures to predict response to infliximab in patients with ulcerative colitis.
I Arijs, K Li, G Toedter, R Quintens, L Van Lommel, K Van Steen, P Leemans, G De Hertogh, K Lemaire, M Ferrante,[...]. Gut 2009
236
5


Adjusting batch effects in microarray expression data using empirical Bayes methods.
W Evan Johnson, Cheng Li, Ariel Rabinovic. Biostatistics 2007
5

Cellular sources of MMP-7, MMP-13 and MMP-28 in ulcerative colitis.
Timo Rath, Martin Roderfeld, Jörg Michael Halwe, Annette Tschuschner, Elke Roeb, Jürgen Graf. Scand J Gastroenterol 2010
29
17

Gene expression profiling and response signatures associated with differential responses to infliximab treatment in ulcerative colitis.
Gary Toedter, Katherine Li, Colleen Marano, Keying Ma, Sarah Sague, C Chris Huang, Xiao-Yu Song, Paul Rutgeerts, Frédéric Baribaud. Am J Gastroenterol 2011
57
8

Enhanced expression of MMP-7 and MMP-13 in inflammatory bowel disease: a precancerous potential?
Timo Rath, Martin Roderfeld, Jürgen Graf, Sandra Wagner, Ann-Kathrin Vehr, Christoph Dietrich, Andreas Geier, Elke Roeb. Inflamm Bowel Dis 2006
63
7

A novel method in the induction of reliable experimental acute and chronic ulcerative colitis in mice.
I Okayasu, S Hatakeyama, M Yamada, T Ohkusa, Y Inagaki, R Nakaya. Gastroenterology 1990
5

Whole genome gene expression meta-analysis of inflammatory bowel disease colon mucosa demonstrates lack of major differences between Crohn's disease and ulcerative colitis.
Atle van Beelen Granlund, Arnar Flatberg, Ann E Østvik, Ignat Drozdov, Bjørn I Gustafsson, Mark Kidd, Vidar Beisvag, Sverre H Torp, Helge L Waldum, Tom Christian Martinsen,[...]. PLoS One 2013
81
6

DUOX2 and DUOXA2 form the predominant enzyme system capable of producing the reactive oxygen species H2O2 in active ulcerative colitis and are modulated by 5-aminosalicylic acid.
Tammie S MacFie, Richard Poulsom, Alexandra Parker, Gary Warnes, Tatjana Boitsova, Anke Nijhuis, Nirosha Suraweera, Angela Poehlmann, Jaroslaw Szary, Roger Feakins,[...]. Inflamm Bowel Dis 2014
50
10

Pediatric Crohn disease patients exhibit specific ileal transcriptome and microbiome signature.
Yael Haberman, Timothy L Tickle, Phillip J Dexheimer, Mi-Ok Kim, Dora Tang, Rebekah Karns, Robert N Baldassano, Joshua D Noe, Joel Rosh, James Markowitz,[...]. J Clin Invest 2014
281
5

The global burden of IBD: from 2015 to 2025.
Gilaad G Kaplan. Nat Rev Gastroenterol Hepatol 2015
746
5


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.