A citation-based method for searching scientific literature

Debrah M Thompson, Cheng Lu, Pamela J Green, Roy Parker. RNA 2008
Times Cited: 379







List of co-cited articles
1099 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Angiogenin cleaves tRNA and promotes stress-induced translational repression.
Satoshi Yamasaki, Pavel Ivanov, Guo-Fu Hu, Paul Anderson. J Cell Biol 2009
538
56

Angiogenin-induced tRNA fragments inhibit translation initiation.
Pavel Ivanov, Mohamed M Emara, Judit Villen, Steven P Gygi, Paul Anderson. Mol Cell 2011
560
46

Biogenesis and function of tRNA fragments during sperm maturation and fertilization in mammals.
Upasna Sharma, Colin C Conine, Jeremy M Shea, Ana Boskovic, Alan G Derr, Xin Y Bing, Clemence Belleannee, Alper Kucukural, Ryan W Serra, Fengyun Sun,[...]. Science 2016
613
41


Endogenous tRNA-Derived Fragments Suppress Breast Cancer Progression via YBX1 Displacement.
Hani Goodarzi, Xuhang Liu, Hoang C B Nguyen, Steven Zhang, Lisa Fish, Sohail F Tavazoie. Cell 2015
398
39

Sperm tsRNAs contribute to intergenerational inheritance of an acquired metabolic disorder.
Qi Chen, Menghong Yan, Zhonghong Cao, Xin Li, Yunfang Zhang, Junchao Shi, Gui-hai Feng, Hongying Peng, Xudong Zhang, Ying Zhang,[...]. Science 2016
631
39

Stress induces tRNA cleavage by angiogenin in mammalian cells.
Hanjiang Fu, Junjun Feng, Qin Liu, Fang Sun, Yi Tie, Jie Zhu, Ruiyun Xing, Zhixian Sun, Xiaofei Zheng. FEBS Lett 2009
333
39

Human tRNA-derived small RNAs in the global regulation of RNA silencing.
Dirk Haussecker, Yong Huang, Ashley Lau, Poornima Parameswaran, Andrew Z Fire, Mark A Kay. RNA 2010
454
37

A novel class of small RNAs: tRNA-derived RNA fragments (tRFs).
Yong Sun Lee, Yoshiyuki Shibata, Ankit Malhotra, Anindya Dutta. Genes Dev 2009
669
37

Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs.
Christian Cole, Andrew Sobala, Cheng Lu, Shawn R Thatcher, Andrew Bowman, John W S Brown, Pamela J Green, Geoffrey J Barton, Gyorgy Hutvagner. RNA 2009
420
36

Sex hormone-dependent tRNA halves enhance cell proliferation in breast and prostate cancers.
Shozo Honda, Phillipe Loher, Megumi Shigematsu, Juan P Palazzo, Ryusuke Suzuki, Issei Imoto, Isidore Rigoutsos, Yohei Kirino. Proc Natl Acad Sci U S A 2015
190
32

A transfer-RNA-derived small RNA regulates ribosome biogenesis.
Hak Kyun Kim, Gabriele Fuchs, Shengchun Wang, Wei Wei, Yue Zhang, Hyesuk Park, Biswajoy Roy-Chaudhuri, Pan Li, Jianpeng Xu, Kirk Chu,[...]. Nature 2017
194
32

tRNA-derived microRNA modulates proliferation and the DNA damage response and is down-regulated in B cell lymphoma.
Roy L Maute, Christof Schneider, Pavel Sumazin, Antony Holmes, Andrea Califano, Katia Basso, Riccardo Dalla-Favera. Proc Natl Acad Sci U S A 2013
344
31

tRNA fragments (tRFs) guide Ago to regulate gene expression post-transcriptionally in a Dicer-independent manner.
Canan Kuscu, Pankaj Kumar, Manjari Kiran, Zhangli Su, Asrar Malik, Anindya Dutta. RNA 2018
153
30


LTR-Retrotransposon Control by tRNA-Derived Small RNAs.
Andrea J Schorn, Michael J Gutbrod, Chantal LeBlanc, Rob Martienssen. Cell 2017
181
27

G-quadruplex structures contribute to the neuroprotective effects of angiogenin-induced tRNA fragments.
Pavel Ivanov, Elizabeth O'Day, Mohamed M Emara, Gerhard Wagner, Judy Lieberman, Paul Anderson. Proc Natl Acad Sci U S A 2014
190
27

RNA methylation by Dnmt2 protects transfer RNAs against stress-induced cleavage.
Matthias Schaefer, Tim Pollex, Katharina Hanna, Francesca Tuorto, Madeleine Meusburger, Mark Helm, Frank Lyko. Genes Dev 2010
426
27

Pseudouridylation of tRNA-Derived Fragments Steers Translational Control in Stem Cells.
Nicola Guzzi, Maciej Cieśla, Phuong Cao Thi Ngoc, Stefan Lang, Sonali Arora, Marios Dimitriou, Kristyna Pimková, Mikael N E Sommarin, Roberto Munita, Michal Lubas,[...]. Cell 2018
173
26

Aberrant methylation of tRNAs links cellular stress to neuro-developmental disorders.
Sandra Blanco, Sabine Dietmann, Joana V Flores, Shobbir Hussain, Claudia Kutter, Peter Humphreys, Margus Lukk, Patrick Lombard, Lucas Treps, Martyna Popis,[...]. EMBO J 2014
308
26

Dnmt2 mediates intergenerational transmission of paternally acquired metabolic disorders through sperm small non-coding RNAs.
Yunfang Zhang, Xudong Zhang, Junchao Shi, Francesca Tuorto, Xin Li, Yusheng Liu, Reinhard Liebers, Liwen Zhang, Yongcun Qu, Jingjing Qian,[...]. Nat Cell Biol 2018
173
25

Angiogenin-induced tRNA-derived stress-induced RNAs promote stress-induced stress granule assembly.
Mohamed M Emara, Pavel Ivanov, Tyler Hickman, Nemisha Dawra, Sarah Tisdale, Nancy Kedersha, Guo-Fu Hu, Paul Anderson. J Biol Chem 2010
308
24

Stressing out over tRNA cleavage.
Debrah M Thompson, Roy Parker. Cell 2009
284
23

Biogenesis and Function of Transfer RNA-Related Fragments (tRFs).
Pankaj Kumar, Canan Kuscu, Anindya Dutta. Trends Biochem Sci 2016
225
22



tRFdb: a database for transfer RNA fragments.
Pankaj Kumar, Suresh B Mudunuri, Jordan Anaya, Anindya Dutta. Nucleic Acids Res 2015
135
20

tRNA-derived fragments target the ribosome and function as regulatory non-coding RNA in Haloferax volcanii.
Jennifer Gebetsberger, Marek Zywicki, Andrea Künzi, Norbert Polacek. Archaea 2012
166
20

Angiogenin generates specific stress-induced tRNA halves and is not involved in tRF-3-mediated gene silencing.
Zhangli Su, Canan Kuscu, Asrar Malik, Etsuko Shibata, Anindya Dutta. J Biol Chem 2019
51
39

Dissecting tRNA-derived fragment complexities using personalized transcriptomes reveals novel fragment classes and unexpected dependencies.
Aristeidis G Telonis, Phillipe Loher, Shozo Honda, Yi Jing, Juan Palazzo, Yohei Kirino, Isidore Rigoutsos. Oncotarget 2015
108
20

5' tRNA halves are present as abundant complexes in serum, concentrated in blood cells, and modulated by aging and calorie restriction.
Joseph M Dhahbi, Stephen R Spindler, Hani Atamna, Amy Yamakawa, Dario Boffelli, Patricia Mote, David I K Martin. BMC Genomics 2013
144
19


Extensive terminal and asymmetric processing of small RNAs from rRNAs, snoRNAs, snRNAs, and tRNAs.
Zhihua Li, Christine Ender, Gunter Meister, Patrick S Moore, Yuan Chang, Bino John. Nucleic Acids Res 2012
205
19

tRNA-derived small RNAs target transposable element transcripts.
German Martinez, Sarah G Choudury, R Keith Slotkin. Nucleic Acids Res 2017
137
19

tRNA-Derived Small RNA: A Novel Regulatory Small Non-Coding RNA.
Siqi Li, Zhengping Xu, Jinghao Sheng. Genes (Basel) 2018
134
18

tsRNA signatures in cancer.
Veronica Balatti, Giovanni Nigita, Dario Veneziano, Alessandra Drusco, Gary S Stein, Terri L Messier, Nicholas H Farina, Jane B Lian, Luisa Tomasello, Chang-Gong Liu,[...]. Proc Natl Acad Sci U S A 2017
120
18

Identification and functional characterization of tRNA-derived RNA fragments (tRFs) in respiratory syncytial virus infection.
Qingrong Wang, Inhan Lee, Junping Ren, Subramanian Shankar Ajay, Yong Sun Lee, Xiaoyong Bao. Mol Ther 2013
187
18

YB-1 regulates tiRNA-induced Stress Granule formation but not translational repression.
Shawn M Lyons, Chris Achorn, Nancy L Kedersha, Paul J Anderson, Pavel Ivanov. Nucleic Acids Res 2016
122
17

Genome-wide identification and quantitative analysis of cleaved tRNA fragments induced by cellular stress.
Mridusmita Saikia, Dawid Krokowski, Bo-Jhih Guan, Pavel Ivanov, Marc Parisien, Guo-fu Hu, Paul Anderson, Tao Pan, Maria Hatzoglou. J Biol Chem 2012
138
17

Angiogenin-cleaved tRNA halves interact with cytochrome c, protecting cells from apoptosis during osmotic stress.
Mridusmita Saikia, Raul Jobava, Marc Parisien, Andrea Putnam, Dawid Krokowski, Xing-Huang Gao, Bo-Jhih Guan, Yiyuan Yuan, Eckhard Jankowsky, Zhaoyang Feng,[...]. Mol Cell Biol 2014
162
17

A tRNA-derived fragment competes with mRNA for ribosome binding and regulates translation during stress.
Jennifer Gebetsberger, Leander Wyss, Anna M Mleczko, Julia Reuther, Norbert Polacek. RNA Biol 2017
103
17

Efficient and quantitative high-throughput tRNA sequencing.
Guanqun Zheng, Yidan Qin, Wesley C Clark, Qing Dai, Chengqi Yi, Chuan He, Alan M Lambowitz, Tao Pan. Nat Methods 2015
270
17

A tRNA half modulates translation as stress response in Trypanosoma brucei.
Roger Fricker, Rebecca Brogli, Hannes Luidalepp, Leander Wyss, Michel Fasnacht, Oliver Joss, Marek Zywicki, Mark Helm, André Schneider, Marina Cristodero,[...]. Nat Commun 2019
64
26

MINTbase v2.0: a comprehensive database for tRNA-derived fragments that includes nuclear and mitochondrial fragments from all The Cancer Genome Atlas projects.
Venetia Pliatsika, Phillipe Loher, Rogan Magee, Aristeidis G Telonis, Eric Londin, Megumi Shigematsu, Yohei Kirino, Isidore Rigoutsos. Nucleic Acids Res 2018
92
17

RNA cytosine methylation by Dnmt2 and NSun2 promotes tRNA stability and protein synthesis.
Francesca Tuorto, Reinhard Liebers, Tanja Musch, Matthias Schaefer, Sarah Hofmann, Stefanie Kellner, Michaela Frye, Mark Helm, Georg Stoecklin, Frank Lyko. Nat Struct Mol Biol 2012
303
16

Small ncRNA transcriptome analysis from Aspergillus fumigatus suggests a novel mechanism for regulation of protein synthesis.
Christoph Jöchl, Mathieu Rederstorff, Jana Hertel, Peter F Stadler, Ivo L Hofacker, Markus Schrettl, Hubertus Haas, Alexander Hüttenhofer. Nucleic Acids Res 2008
122
16

Dynamic expression of tRNA-derived small RNAs define cellular states.
Srikar Krishna, Daniel Gr Yim, Vairavan Lakshmanan, Varsha Tirumalai, Judice Ly Koh, Jung Eun Park, Jit Kong Cheong, Joo Leng Low, Michelle Js Lim, Siu Kwan Sze,[...]. EMBO Rep 2019
52
30


ARM-seq: AlkB-facilitated RNA methylation sequencing reveals a complex landscape of modified tRNA fragments.
Aaron E Cozen, Erin Quartley, Andrew D Holmes, Eva Hrabeta-Robinson, Eric M Phizicky, Todd M Lowe. Nat Methods 2015
222
16

Small RNAs Are Trafficked from the Epididymis to Developing Mammalian Sperm.
Upasna Sharma, Fengyun Sun, Colin C Conine, Brian Reichholf, Shweta Kukreja, Veronika A Herzog, Stefan L Ameres, Oliver J Rando. Dev Cell 2018
152
16


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.