A citation-based method for searching scientific literature

Yasuyuki Onodera, Kosuke Nakagawa, Jeremy R Haag, Diane Pikaard, Tetsuo Mikami, Thomas Ream, Yusuke Ito, Craig S Pikaard. Genetics 2008
Times Cited: 34







List of co-cited articles
186 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation.
Yasuyuki Onodera, Jeremy R Haag, Thomas Ream, Pedro Costa Nunes, Olga Pontes, Craig S Pikaard. Cell 2005
448
38

Subunit compositions of the RNA-silencing enzymes Pol IV and Pol V reveal their origins as specialized forms of RNA polymerase II.
Thomas S Ream, Jeremy R Haag, Andrzej T Wierzbicki, Carrie D Nicora, Angela D Norbeck, Jian-Kang Zhu, Gretchen Hagen, Thomas J Guilfoyle, Ljiljana Pasa-Tolić, Craig S Pikaard. Mol Cell 2009
167
26

Reinforcement of silencing at transposons and highly repeated sequences requires the concerted action of two distinct RNA polymerases IV in Arabidopsis.
Dominique Pontier, Galina Yahubyan, Danielle Vega, Agnès Bulski, Julio Saez-Vasquez, Mohamed-Ali Hakimi, Silva Lerbs-Mache, Vincent Colot, Thierry Lagrange. Genes Dev 2005
277
20


The Arabidopsis chromatin-modifying nuclear siRNA pathway involves a nucleolar RNA processing center.
Olga Pontes, Carey Fei Li, Pedro Costa Nunes, Jeremy Haag, Thomas Ream, Alexa Vitins, Steven E Jacobsen, Craig S Pikaard. Cell 2006
314
17

RNA polymerase IV directs silencing of endogenous DNA.
A J Herr, M B Jensen, T Dalmay, D C Baulcombe. Science 2005
482
17

Atypical RNA polymerase subunits required for RNA-directed DNA methylation.
Tatsuo Kanno, Bruno Huettel, M Florian Mette, Werner Aufsatz, Estelle Jaligot, Lucia Daxinger, David P Kreil, Marjori Matzke, Antonius J M Matzke. Nat Genet 2005
291
17



Genetic and functional diversification of small RNA pathways in plants.
Zhixin Xie, Lisa K Johansen, Adam M Gustafson, Kristin D Kasschau, Andrew D Lellis, Daniel Zilberman, Steven E Jacobsen, James C Carrington. PLoS Biol 2004
14



Gateway-compatible vectors for plant functional genomics and proteomics.
Keith W Earley, Jeremy R Haag, Olga Pontes, Kristen Opper, Tom Juehne, Keming Song, Craig S Pikaard. Plant J 2006
14

Genome-wide insertional mutagenesis of Arabidopsis thaliana.
José M Alonso, Anna N Stepanova, Thomas J Leisse, Christopher J Kim, Huaming Chen, Paul Shinn, Denise K Stevenson, Justin Zimmerman, Pascual Barajas, Rosa Cheuk,[...]. Science 2003
14

Structure of eukaryotic RNA polymerases.
P Cramer, K-J Armache, S Baumli, S Benkert, F Brueckner, C Buchen, G E Damsma, S Dengl, S R Geiger, A J Jasiak,[...]. Annu Rev Biophys 2008
195
14


Intergenic transcription by RNA polymerase II coordinates Pol IV and Pol V in siRNA-directed transcriptional gene silencing in Arabidopsis.
Binglian Zheng, Zhengming Wang, Shengben Li, Bin Yu, Jin-Yuan Liu, Xuemei Chen. Genes Dev 2009
177
14

PolIVb influences RNA-directed DNA methylation independently of its role in siRNA biogenesis.
Rebecca A Mosher, Frank Schwach, David Studholme, David C Baulcombe. Proc Natl Acad Sci U S A 2008
201
11


Evolution of multisubunit RNA polymerases in the three domains of life.
Finn Werner, Dina Grohmann. Nat Rev Microbiol 2011
258
11


Subunit compositions of Arabidopsis RNA polymerases I and III reveal Pol I- and Pol III-specific forms of the AC40 subunit and alternative forms of the C53 subunit.
Thomas S Ream, Jeremy R Haag, Frederic Pontvianne, Carrie D Nicora, Angela D Norbeck, Ljiljana Paša-Tolić, Craig S Pikaard. Nucleic Acids Res 2015
14
28

Transcription-driven chromatin repression of Intragenic transcription start sites.
Mathias Nielsen, Ryan Ard, Xueyuan Leng, Maxim Ivanov, Peter Kindgren, Vicent Pelechano, Sebastian Marquardt. PLoS Genet 2019
41
11

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
11

Roles of RNA polymerase IV in gene silencing.
Craig S Pikaard, Jeremy R Haag, Thomas Ream, Andrzej T Wierzbicki. Trends Plant Sci 2008
116
8

Reiterated WG/GW motifs form functionally and evolutionarily conserved ARGONAUTE-binding platforms in RNAi-related components.
Mahmoud El-Shami, Dominique Pontier, Sylvie Lahmy, Laurence Braun, Claire Picart, Danielle Vega, Mohamed-Ali Hakimi, Steven E Jacobsen, Richard Cooke, Thierry Lagrange. Genes Dev 2007
230
8

An ARGONAUTE4-containing nuclear processing center colocalized with Cajal bodies in Arabidopsis thaliana.
Carey Fei Li, Olga Pontes, Mahmoud El-Shami, Ian R Henderson, Yana V Bernatavichute, Simon W-L Chan, Thierry Lagrange, Craig S Pikaard, Steven E Jacobsen. Cell 2006
278
8

Role of RNA polymerase IV in plant small RNA metabolism.
Xiaoyu Zhang, Ian R Henderson, Cheng Lu, Pamela J Green, Steven E Jacobsen. Proc Natl Acad Sci U S A 2007
193
8

RNA polymerase II is required for RNAi-dependent heterochromatin assembly.
Hiroaki Kato, Derek B Goto, Robert A Martienssen, Takeshi Urano, Koichi Furukawa, Yota Murakami. Science 2005
219
8

Endogenous targets of RNA-directed DNA methylation and Pol IV in Arabidopsis.
Bruno Huettel, Tatsuo Kanno, Lucia Daxinger, Werner Aufsatz, Antonius J M Matzke, Marjori Matzke. EMBO J 2006
196
8


RNA Pol II subunit Rpb7 promotes centromeric transcription and RNAi-directed chromatin silencing.
Ingela Djupedal, Manuela Portoso, Henrik Spåhr, Carolina Bonilla, Claes M Gustafsson, Robin C Allshire, Karl Ekwall. Genes Dev 2005
187
8

Multisubunit RNA polymerases.
Patrick Cramer. Curr Opin Struct Biol 2002
170
8


ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation.
Daniel Zilberman, Xiaofeng Cao, Steven E Jacobsen. Science 2003
730
8

Control of male gametophyte development.
Sheila McCormick. Plant Cell 2004
365
8

Proteome mapping of mature pollen of Arabidopsis thaliana.
Rachel Holmes-Davis, Charlene K Tanaka, William H Vensel, William J Hurkman, Sheila McCormick. Proteomics 2005
178
8

A gene expression map of Arabidopsis thaliana development.
Markus Schmid, Timothy S Davison, Stefan R Henz, Utz J Pape, Monika Demar, Martin Vingron, Bernhard Schölkopf, Detlef Weigel, Jan U Lohmann. Nat Genet 2005
8

Comparative analysis of the Arabidopsis pollen transcriptome.
David Honys, David Twell. Plant Physiol 2003
355
8

Genetic and molecular identification of genes required for female gametophyte development and function in Arabidopsis.
Gabriela C Pagnussat, Hee-Ju Yu, Quy A Ngo, Sarojam Rajani, Sevugan Mayalagu, Cameron S Johnson, Arnaud Capron, Li-Fen Xie, De Ye, Venkatesan Sundaresan. Development 2005
386
8


Role of Arabidopsis AGO6 in siRNA accumulation, DNA methylation and transcriptional gene silencing.
Xianwu Zheng, Jianhua Zhu, Avnish Kapoor, Jian-Kang Zhu. EMBO J 2007
195
8

An atypical RNA polymerase involved in RNA silencing shares small subunits with RNA polymerase II.
Linfeng Huang, Alexandra M E Jones, Iain Searle, Kanu Patel, Hannes Vogler, Nina C Hubner, David C Baulcombe. Nat Struct Mol Biol 2009
94
8

RNA polymerase V transcription guides ARGONAUTE4 to chromatin.
Andrzej T Wierzbicki, Thomas S Ream, Jeremy R Haag, Craig S Pikaard. Nat Genet 2009
298
8

PolV(PolIVb) function in RNA-directed DNA methylation requires the conserved active site and an additional plant-specific subunit.
Sylvie Lahmy, Dominique Pontier, Emilie Cavel, Danielle Vega, Mahmoud El-Shami, Tatsuo Kanno, Thierry Lagrange. Proc Natl Acad Sci U S A 2009
54
8

Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis.
Yi Wang, Wen-Zheng Zhang, Lian-Fen Song, Jun-Jie Zou, Zhen Su, Wei-Hua Wu. Plant Physiol 2008
290
8

Arabidopsis female gametophyte gene expression map reveals similarities between plant and animal gametes.
Samuel E Wuest, Kitty Vijverberg, Anja Schmidt, Manuel Weiss, Jacqueline Gheyselinck, Miriam Lohr, Frank Wellmer, Jörg Rahnenführer, Christian von Mering, Ueli Grossniklaus. Curr Biol 2010
227
8

Identifying essential genes in Arabidopsis thaliana.
David Meinke, Rosanna Muralla, Colleen Sweeney, Allan Dickerman. Trends Plant Sci 2008
164
8

The role of Mediator in small and long noncoding RNA production in Arabidopsis thaliana.
Yun Ju Kim, Binglian Zheng, Yu Yu, So Youn Won, Beixin Mo, Xuemei Chen. EMBO J 2011
173
8

Molecular foundations of reproductive lethality in Arabidopsis thaliana.
Rosanna Muralla, Johnny Lloyd, David Meinke. PLoS One 2011
66
8


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.