A citation-based method for searching scientific literature

Hui Li, Jinglan Wang, Gil Mor, Jeffrey Sklar. Science 2008
Times Cited: 204







List of co-cited articles
968 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


A chimeric RNA characteristic of rhabdomyosarcoma in normal myogenesis process.
Huiling Yuan, Fujun Qin, Mercedeh Movassagh, Hong Park, Wendy Golden, Zhongqiu Xie, Peng Zhang, Jeffrey Sklar, Hui Li. Cancer Discov 2013
57
63

Chimeric transcript generated by cis-splicing of adjacent genes regulates prostate cancer cell proliferation.
Yanmei Zhang, Mei Gong, Huiling Yuan, Hong G Park, Henry F Frierson, Hui Li. Cancer Discov 2012
98
34

Recurrent chimeric fusion RNAs in non-cancer tissues and cells.
Mihaela Babiceanu, Fujun Qin, Zhongqiu Xie, Yuemeng Jia, Kevin Lopez, Nick Janus, Loryn Facemire, Shailesh Kumar, Yuwei Pang, Yanjun Qi,[...]. Nucleic Acids Res 2016
105
34

SLC45A3-ELK4 is a novel and frequent erythroblast transformation-specific fusion transcript in prostate cancer.
David S Rickman, Dorothee Pflueger, Benjamin Moss, Vanessa E VanDoren, Chen X Chen, Alexandre de la Taille, Rainer Kuefer, Ashutosh K Tewari, Sunita R Setlur, Francesca Demichelis,[...]. Cancer Res 2009
145
31

The impact of translocations and gene fusions on cancer causation.
Felix Mitelman, Bertil Johansson, Fredrik Mertens. Nat Rev Cancer 2007
892
30

Integrative transcriptome sequencing identifies trans-splicing events with important roles in human embryonic stem cell pluripotency.
Chan-Shuo Wu, Chun-Ying Yu, Ching-Yu Chuang, Michael Hsiao, Cheng-Fu Kao, Hung-Chih Kuo, Trees-Juen Chuang. Genome Res 2014
71
42


Transcriptome sequencing to detect gene fusions in cancer.
Christopher A Maher, Chandan Kumar-Sinha, Xuhong Cao, Shanker Kalyana-Sundaram, Bo Han, Xiaojun Jing, Lee Sam, Terrence Barrette, Nallasivam Palanisamy, Arul M Chinnaiyan. Nature 2009
590
28

Transcription-mediated gene fusion in the human genome.
Pinchas Akiva, Amir Toporik, Sarit Edelheit, Yifat Peretz, Alex Diber, Ronen Shemesh, Amit Novik, Rotem Sorek. Genome Res 2006
208
26

Recurrent chimeric RNAs enriched in human prostate cancer identified by deep sequencing.
Kalpana Kannan, Liguo Wang, Jianghua Wang, Michael M Ittmann, Wei Li, Laising Yen. Proc Natl Acad Sci U S A 2011
130
25

Recurrent fusion of TMPRSS2 and ETS transcription factor genes in prostate cancer.
Scott A Tomlins, Daniel R Rhodes, Sven Perner, Saravana M Dhanasekaran, Rohit Mehra, Xiao-Wei Sun, Sooryanarayana Varambally, Xuhong Cao, Joelle Tchinda, Rainer Kuefer,[...]. Science 2005
22

Gene fusions and RNA trans-splicing in normal and neoplastic human cells.
Hui Li, Jinglan Wang, Xianyong Ma, Jeffrey Sklar. Cell Cycle 2009
65
32

Deep RNA sequencing analysis of readthrough gene fusions in human prostate adenocarcinoma and reference samples.
Serban Nacu, Wenlin Yuan, Zhengyan Kan, Deepali Bhatt, Celina Sanchez Rivers, Jeremy Stinson, Brock A Peters, Zora Modrusan, Kenneth Jung, Somasekar Seshagiri,[...]. BMC Med Genomics 2011
113
21

Tandem chimerism as a means to increase protein complexity in the human genome.
Genís Parra, Alexandre Reymond, Noura Dabbouseh, Emmanouil T Dermitzakis, Robert Castelo, Timothy M Thomson, Stylianos E Antonarakis, Roderic Guigó. Genome Res 2006
154
20

Chimeras taking shape: potential functions of proteins encoded by chimeric RNA transcripts.
Milana Frenkel-Morgenstern, Vincent Lacroix, Iakes Ezkurdia, Yishai Levin, Alexandra Gabashvili, Jaime Prilusky, Angela Del Pozo, Michael Tress, Rory Johnson, Roderic Guigo,[...]. Genome Res 2012
101
20

SOAPfuse: an algorithm for identifying fusion transcripts from paired-end RNA-Seq data.
Wenlong Jia, Kunlong Qiu, Minghui He, Pengfei Song, Quan Zhou, Feng Zhou, Yuan Yu, Dandan Zhu, Michael L Nickerson, Shengqing Wan,[...]. Genome Biol 2013
128
20

Discovery of CTCF-sensitive Cis-spliced fusion RNAs between adjacent genes in human prostate cells.
Fujun Qin, Zhenguo Song, Mihaela Babiceanu, Yansu Song, Loryn Facemire, Ritambhara Singh, Mazhar Adli, Hui Li. PLoS Genet 2015
59
33

Chimeric RNAs generated by intergenic splicing in normal and cancer cells.
Kasey Jividen, Hui Li. Genes Chromosomes Cancer 2014
51
39

The emerging complexity of gene fusions in cancer.
Fredrik Mertens, Bertil Johansson, Thoas Fioretos, Felix Mitelman. Nat Rev Cancer 2015
368
20

Identification of the transforming EML4-ALK fusion gene in non-small-cell lung cancer.
Manabu Soda, Young Lim Choi, Munehiro Enomoto, Shuji Takada, Yoshihiro Yamashita, Shunpei Ishikawa, Shin-ichiro Fujiwara, Hideki Watanabe, Kentaro Kurashina, Hisashi Hatanaka,[...]. Nature 2007
18


Global analysis of trans-splicing in Drosophila.
C Joel McManus, Michael O Duff, Jodi Eipper-Mains, Brenton R Graveley. Proc Natl Acad Sci U S A 2010
75
21

Chimeric transcript discovery by paired-end transcriptome sequencing.
Christopher A Maher, Nallasivam Palanisamy, John C Brenner, Xuhong Cao, Shanker Kalyana-Sundaram, Shujun Luo, Irina Khrebtukova, Terrence R Barrette, Catherine Grasso, Jindan Yu,[...]. Proc Natl Acad Sci U S A 2009
246
16

SLC45A3-ELK4 chimera in prostate cancer: spotlight on cis-splicing.
Chandan Kumar-Sinha, Shanker Kalyana-Sundaram, Arul M Chinnaiyan. Cancer Discov 2012
34
47

Intergenic mRNA molecules resulting from trans-splicing.
Csaba Finta, Peter G Zaphiropoulos. J Biol Chem 2002
113
15


Frequent fusion of the JAZF1 and JJAZ1 genes in endometrial stromal tumors.
J I Koontz, A L Soreng, M Nucci, F C Kuo, P Pauwels, H van Den Berghe, P Dal Cin, J A Fletcher, J Sklar. Proc Natl Acad Sci U S A 2001
264
15

Discovering chimeric transcripts in paired-end RNA-seq data by using EricScript.
Matteo Benelli, Chiara Pescucci, Giuseppina Marseglia, Marco Severgnini, Francesca Torricelli, Alberto Magi. Bioinformatics 2012
99
15

Intergenically Spliced Chimeric RNAs in Cancer.
Yuemeng Jia, Zhongqiu Xie, Hui Li. Trends Cancer 2016
51
29

Recurrent read-through fusion transcripts in breast cancer.
Katherine E Varley, Jason Gertz, Brian S Roberts, Nicholas S Davis, Kevin M Bowling, Marie K Kirby, Amy S Nesmith, Patsy G Oliver, William E Grizzle, Andres Forero,[...]. Breast Cancer Res Treat 2014
106
14

Evolutionary Insights into RNA trans-Splicing in Vertebrates.
Quan Lei, Cong Li, Zhixiang Zuo, Chunhua Huang, Hanhua Cheng, Rongjia Zhou. Genome Biol Evol 2016
56
25

Chimeric RNAs in cancer and normal physiology.
Katarzyna Chwalenia, Loryn Facemire, Hui Li. Wiley Interdiscip Rev RNA 2017
32
43


The landscape and therapeutic relevance of cancer-associated transcript fusions.
K Yoshihara, Q Wang, W Torres-Garcia, S Zheng, R Vegesna, H Kim, R G W Verhaak. Oncogene 2015
298
13

RNA-mediated epigenetic programming of a genome-rearrangement pathway.
Mariusz Nowacki, Vikram Vijayan, Yi Zhou, Klaas Schotanus, Thomas G Doak, Laura F Landweber. Nature 2008
173
13

Recurrent fusion RNA DUS4L-BCAP29 in non-cancer human tissues and cells.
Yue Tang, Fujun Qin, Aiqun Liu, Hui Li. Oncotarget 2017
25
52

Evidence for transcript networks composed of chimeric RNAs in human cells.
Sarah Djebali, Julien Lagarde, Philipp Kapranov, Vincent Lacroix, Christelle Borel, Jonathan M Mudge, Cédric Howald, Sylvain Foissac, Catherine Ucla, Jacqueline Chrast,[...]. PLoS One 2012
46
26

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
12

deFuse: an algorithm for gene fusion discovery in tumor RNA-Seq data.
Andrew McPherson, Fereydoun Hormozdiari, Abdalnasser Zayed, Ryan Giuliany, Gavin Ha, Mark G F Sun, Malachi Griffith, Alireza Heravi Moussavi, Janine Senz, Nataliya Melnyk,[...]. PLoS Comput Biol 2011
381
12

FusionMap: detecting fusion genes from next-generation sequencing data at base-pair resolution.
Huanying Ge, Kejun Liu, Todd Juan, Fang Fang, Matthew Newman, Wolfgang Hoeck. Bioinformatics 2011
174
12

Recurrent reciprocal RNA chimera involving YPEL5 and PPP1CB in chronic lymphocytic leukemia.
Thirunavukkarasu Velusamy, Nallasivam Palanisamy, Shanker Kalyana-Sundaram, Anagh Anant Sahasrabuddhe, Christopher A Maher, Daniel R Robinson, David W Bahler, Timothy T Cornell, Thomas E Wilson, Megan S Lim,[...]. Proc Natl Acad Sci U S A 2013
33
36


ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data.
Milana Frenkel-Morgenstern, Alessandro Gorohovski, Vincent Lacroix, Mark Rogers, Kristina Ibanez, Cesar Boullosa, Eduardo Andres Leon, Asa Ben-Hur, Alfonso Valencia. Nucleic Acids Res 2013
40
27

Is an observed non-co-linear RNA product spliced in trans, in cis or just in vitro?
Chun-Ying Yu, Hsiao-Jung Liu, Li-Yuan Hung, Hung-Chih Kuo, Trees-Juen Chuang. Nucleic Acids Res 2014
33
33


TopHat-Fusion: an algorithm for discovery of novel fusion transcripts.
Daehwan Kim, Steven L Salzberg. Genome Biol 2011
519
11

TFG, a target of chromosome translocations in lymphoma and soft tissue tumors, fuses to GPR128 in healthy individuals.
Andrew Chase, Thomas Ernst, Andreas Fiebig, Andrew Collins, Francis Grand, Philipp Erben, Andreas Reiter, Stefan Schreiber, Nicholas C P Cross. Haematologica 2010
45
24

Circular RNAs are abundant, conserved, and associated with ALU repeats.
William R Jeck, Jessica A Sorrentino, Kai Wang, Michael K Slevin, Christin E Burd, Jinze Liu, William F Marzluff, Norman E Sharpless. RNA 2013
11

Effect of crizotinib on overall survival in patients with advanced non-small-cell lung cancer harbouring ALK gene rearrangement: a retrospective analysis.
Alice T Shaw, Beow Y Yeap, Benjamin J Solomon, Gregory J Riely, Justin Gainor, Jeffrey A Engelman, Geoffrey I Shapiro, Daniel B Costa, Sai-Hong I Ou, Mohit Butaney,[...]. Lancet Oncol 2011
693
11

Recurrent cis-SAGe chimeric RNA, D2HGDH-GAL3ST2, in prostate cancer.
Fujun Qin, Zhenguo Song, Maxwell Chang, Yansu Song, Henry Frierson, Hui Li. Cancer Lett 2016
26
42


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.