A citation-based method for searching scientific literature

Yongsu Jeong, Federico Coluccio Leskow, Kenia El-Jaick, Erich Roessler, Maximilian Muenke, Anastasia Yocum, Christele Dubourg, Xue Li, Xin Geng, Guillermo Oliver, Douglas J Epstein. Nat Genet 2008
Times Cited: 133







List of co-cited articles
1564 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Haploinsufficiency of Six3 fails to activate Sonic hedgehog expression in the ventral forebrain and causes holoprosencephaly.
Xin Geng, Christina Speirs, Oleg Lagutin, Adi Inbal, Wei Liu, Lilianna Solnica-Krezel, Yongsu Jeong, Douglas J Epstein, Guillermo Oliver. Dev Cell 2008
124
40

Cyclopia and defective axial patterning in mice lacking Sonic hedgehog gene function.
C Chiang, Y Litingtung, E Lee, K E Young, J L Corden, H Westphal, P A Beachy. Nature 1996
32

A functional screen for sonic hedgehog regulatory elements across a 1 Mb interval identifies long-range ventral forebrain enhancers.
Yongsu Jeong, Kenia El-Jaick, Erich Roessler, Maximilian Muenke, Douglas J Epstein. Development 2006
177
26

Six3 repression of Wnt signaling in the anterior neuroectoderm is essential for vertebrate forebrain development.
Oleg V Lagutin, Changqi C Zhu, Daisuke Kobayashi, Jacek Topczewski, Kenji Shimamura, Luis Puelles, Helen R C Russell, Peter J McKinnon, Lilianna Solnica-Krezel, Guillermo Oliver. Genes Dev 2003
346
26

A long-range Shh enhancer regulates expression in the developing limb and fin and is associated with preaxial polydactyly.
Laura A Lettice, Simon J H Heaney, Lorna A Purdie, Li Li, Philippe de Beer, Ben A Oostra, Debbie Goode, Greg Elgar, Robert E Hill, Esther de Graaff. Hum Mol Genet 2003
742
25


Highly conserved non-coding elements on either side of SOX9 associated with Pierre Robin sequence.
Sabina Benko, Judy A Fantes, Jeanne Amiel, Dirk-Jan Kleinjan, Sophie Thomas, Jacqueline Ramsay, Negar Jamshidi, Abdelkader Essafi, Simon Heaney, Christopher T Gordon,[...]. Nat Genet 2009
261
17

Topological domains in mammalian genomes identified by analysis of chromatin interactions.
Jesse R Dixon, Siddarth Selvaraj, Feng Yue, Audrey Kim, Yan Li, Yin Shen, Ming Hu, Jun S Liu, Bing Ren. Nature 2012
16

Disruption of SoxB1-dependent Sonic hedgehog expression in the hypothalamus causes septo-optic dysplasia.
Li Zhao, Solsire E Zevallos, Karine Rizzoti, Yongsu Jeong, Robin Lovell-Badge, Douglas J Epstein. Dev Cell 2012
67
22

The molecular genetics of holoprosencephaly.
Erich Roessler, Maximilian Muenke. Am J Med Genet C Semin Med Genet 2010
159
15

Mouse Shh is required for prechordal plate maintenance during brain and craniofacial morphogenesis.
Kazushi Aoto, Yayoi Shikata, Hajime Imai, Daisuke Matsumaru, Tomoyuki Tokunaga, Seiji Shioda, Gen Yamada, Jun Motoyama. Dev Biol 2009
63
22




Mutations in the homeodomain of the human SIX3 gene cause holoprosencephaly.
D E Wallis, E Roessler, U Hehr, L Nanni, T Wiltshire, A Richieri-Costa, G Gillessen-Kaesbach, E H Zackai, J Rommens, M Muenke. Nat Genet 1999
285
13

Mutations in the human Sonic Hedgehog gene cause holoprosencephaly.
E Roessler, E Belloni, K Gaudenz, P Jay, P Berta, S W Scherer, L C Tsui, M Muenke. Nat Genet 1996
856
13

Cooperation of BMP7 and SHH in the induction of forebrain ventral midline cells by prechordal mesoderm.
J K Dale, C Vesque, T J Lints, T K Sampath, A Furley, J Dodd, M Placzek. Cell 1997
248
13

Sonic hedgehog, a member of a family of putative signaling molecules, is implicated in the regulation of CNS polarity.
Y Echelard, D J Epstein, B St-Jacques, L Shen, J Mohler, J A McMahon, A P McMahon. Cell 1993
13

Systematic localization of common disease-associated variation in regulatory DNA.
Matthew T Maurano, Richard Humbert, Eric Rynes, Robert E Thurman, Eric Haugen, Hao Wang, Alex P Reynolds, Richard Sandstrom, Hongzhu Qu, Jennifer Brody,[...]. Science 2012
13


Early steps in the development of the forebrain.
Stephen W Wilson, Corinne Houart. Dev Cell 2004
305
12

Zic2-associated holoprosencephaly is caused by a transient defect in the organizer region during gastrulation.
Nicholas Warr, Nicola Powles-Glover, Anna Chappell, Joan Robson, Dominic Norris, Ruth M Arkell. Hum Mol Genet 2008
70
17

Regional morphogenesis in the hypothalamus: a BMP-Tbx2 pathway coordinates fate and proliferation through Shh downregulation.
Liz Manning, Kyoji Ohyama, Bernhard Saeger, Osamu Hatano, Stuart A Wilson, Malcolm Logan, Marysia Placzek. Dev Cell 2006
100
12

Neuroretina specification in mouse embryos requires Six3-mediated suppression of Wnt8b in the anterior neural plate.
Wei Liu, Oleg Lagutin, Eric Swindell, Milan Jamrich, Guillermo Oliver. J Clin Invest 2010
71
16

In vivo enhancer analysis of human conserved non-coding sequences.
Len A Pennacchio, Nadav Ahituv, Alan M Moses, Shyam Prabhakar, Marcelo A Nobrega, Malak Shoukry, Simon Minovitsky, Inna Dubchak, Amy Holt, Keith D Lewis,[...]. Nature 2006
824
11

ChIP-seq accurately predicts tissue-specific activity of enhancers.
Axel Visel, Matthew J Blow, Zirong Li, Tao Zhang, Jennifer A Akiyama, Amy Holt, Ingrid Plajzer-Frick, Malak Shoukry, Crystal Wright, Feng Chen,[...]. Nature 2009
11

Recessive mutations in a distal PTF1A enhancer cause isolated pancreatic agenesis.
Michael N Weedon, Ines Cebola, Ann-Marie Patch, Sarah E Flanagan, Elisa De Franco, Richard Caswell, Santiago A Rodríguez-Seguí, Charles Shaw-Smith, Candy H-H Cho, Hana Lango Allen,[...]. Nat Genet 2014
162
11

Disruption of autoregulatory feedback by a mutation in a remote, ultraconserved PAX6 enhancer causes aniridia.
Shipra Bhatia, Hemant Bengani, Margaret Fish, Alison Brown, Maria Teresa Divizia, Riccardo de Marco, Guiseppe Damante, Robert Grainger, Veronica van Heyningen, Dirk A Kleinjan. Am J Hum Genet 2013
103
11

Direct interaction of geminin and Six3 in eye development.
Filippo Del Bene, Kristin Tessmar-Raible, Joachim Wittbrodt. Nature 2004
197
10


Dose-dependent functions of Fgf8 in regulating telencephalic patterning centers.
Elaine E Storm, Sonia Garel, Ugo Borello, Jean M Hebert, Salvador Martinez, Susan K McConnell, Gail R Martin, John L R Rubenstein. Development 2006
266
10

Elimination of a long-range cis-regulatory module causes complete loss of limb-specific Shh expression and truncation of the mouse limb.
Tomoko Sagai, Masaki Hosoya, Youichi Mizushina, Masaru Tamura, Toshihiko Shiroishi. Development 2005
263
10

Highly conserved non-coding sequences are associated with vertebrate development.
Adam Woolfe, Martin Goodson, Debbie K Goode, Phil Snell, Gayle K McEwen, Tanya Vavouri, Sarah F Smith, Phil North, Heather Callaway, Krys Kelly,[...]. PLoS Biol 2005
674
10

Role of neuroepithelial Sonic hedgehog in hypothalamic patterning.
Nora-Emöke Szabó, Tianyu Zhao, Murat Cankaya, Thomas Theil, Xunlei Zhou, Gonzalo Alvarez-Bolado. J Neurosci 2009
80
12

A genomic atlas of mouse hypothalamic development.
Tomomi Shimogori, Daniel A Lee, Ana Miranda-Angulo, Yanqin Yang, Hong Wang, Lizhi Jiang, Aya C Yoshida, Ayane Kataoka, Hiromi Mashiko, Marina Avetisyan,[...]. Nat Neurosci 2010
251
10

Disruption of an AP-2alpha binding site in an IRF6 enhancer is associated with cleft lip.
Fedik Rahimov, Mary L Marazita, Axel Visel, Margaret E Cooper, Michael J Hitchler, Michele Rubini, Frederick E Domann, Manika Govil, Kaare Christensen, Camille Bille,[...]. Nat Genet 2008
320
10

Disruption of a long-range cis-acting regulator for Shh causes preaxial polydactyly.
Laura A Lettice, Taizo Horikoshi, Simon J H Heaney, Marijke J van Baren, Herma C van der Linde, Guido J Breedveld, Marijke Joosse, Nurten Akarsu, Ben A Oostra, Naoto Endo,[...]. Proc Natl Acad Sci U S A 2002
334
10

Identification of Sonic hedgehog as a candidate gene responsible for holoprosencephaly.
E Belloni, M Muenke, E Roessler, G Traverso, J Siegel-Bartelt, A Frumkin, H F Mitchell, H Donis-Keller, C Helms, A V Hing,[...]. Nat Genet 1996
492
10

Six3 dosage mediates the pathogenesis of holoprosencephaly.
Xin Geng, Sandra Acosta, Oleg Lagutin, Hyea Jin Gil, Guillermo Oliver. Development 2016
21
47

Holoprosencephaly due to mutations in ZIC2, a homologue of Drosophila odd-paired.
S A Brown, D Warburton, L Y Brown, C Y Yu, E R Roeder, S Stengel-Rutkowski, R C Hennekam, M Muenke. Nat Genet 1998
369
9

A unique chromatin signature uncovers early developmental enhancers in humans.
Alvaro Rada-Iglesias, Ruchi Bajpai, Tomek Swigut, Samantha A Brugmann, Ryan A Flynn, Joanna Wysocka. Nature 2011
9

Comprehensive mapping of long-range interactions reveals folding principles of the human genome.
Erez Lieberman-Aiden, Nynke L van Berkum, Louise Williams, Maxim Imakaev, Tobias Ragoczy, Agnes Telling, Ido Amit, Bryan R Lajoie, Peter J Sabo, Michael O Dorschner,[...]. Science 2009
9

VISTA Enhancer Browser--a database of tissue-specific human enhancers.
Axel Visel, Simon Minovitsky, Inna Dubchak, Len A Pennacchio. Nucleic Acids Res 2007
636
9

A map of the cis-regulatory sequences in the mouse genome.
Yin Shen, Feng Yue, David F McCleary, Zhen Ye, Lee Edsall, Samantha Kuan, Ulrich Wagner, Jesse Dixon, Leonard Lee, Victor V Lobanenkov,[...]. Nature 2012
923
9


Inhibition of Sox2-dependent activation of Shh in the ventral diencephalon by Tbx3 is required for formation of the neurohypophysis.
Mark-Oliver Trowe, Li Zhao, Anna-Carina Weiss, Vincent Christoffels, Douglas J Epstein, Andreas Kispert. Development 2013
42
21

New findings for phenotype-genotype correlations in a large European series of holoprosencephaly cases.
Sandra Mercier, Christèle Dubourg, Nicolas Garcelon, Boris Campillo-Gimenez, Isabelle Gicquel, Marion Belleguic, Leslie Ratié, Laurent Pasquier, Philippe Loget, Claude Bendavid,[...]. J Med Genet 2011
77
11

A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.
Suhas S P Rao, Miriam H Huntley, Neva C Durand, Elena K Stamenova, Ivan D Bochkov, James T Robinson, Adrian L Sanborn, Ido Machol, Arina D Omer, Eric S Lander,[...]. Cell 2014
9

Holoprosencephaly.
Christèle Dubourg, Claude Bendavid, Laurent Pasquier, Catherine Henry, Sylvie Odent, Véronique David. Orphanet J Rare Dis 2007
232
8

Genetics of ventral forebrain development and holoprosencephaly.
M Muenke, P A Beachy. Curr Opin Genet Dev 2000
201
8


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.