A citation-based method for searching scientific literature

Tatsuya Saitoh, Naonobu Fujita, Myoung Ho Jang, Satoshi Uematsu, Bo-Gie Yang, Takashi Satoh, Hiroko Omori, Takeshi Noda, Naoki Yamamoto, Masaaki Komatsu, Keiji Tanaka, Taro Kawai, Tohru Tsujimura, Osamu Takeuchi, Tamotsu Yoshimori, Shizuo Akira. Nature 2008
Times Cited: 1390







List of co-cited articles
877 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Autophagy proteins regulate innate immune responses by inhibiting the release of mitochondrial DNA mediated by the NALP3 inflammasome.
Kiichi Nakahira, Jeffrey Adam Haspel, Vijay A K Rathinam, Seon-Jin Lee, Tamas Dolinay, Hilaire C Lam, Joshua A Englert, Marlene Rabinovitch, Manuela Cernadas, Hong Pyo Kim,[...]. Nat Immunol 2011
27

A role for mitochondria in NLRP3 inflammasome activation.
Rongbin Zhou, Amir S Yazdi, Philippe Menu, Jürg Tschopp. Nature 2011
23

Activation of autophagy by inflammatory signals limits IL-1β production by targeting ubiquitinated inflammasomes for destruction.
Chong-Shan Shi, Kevin Shenderov, Ning-Na Huang, Juraj Kabat, Mones Abu-Asab, Katherine A Fitzgerald, Alan Sher, John H Kehrl. Nat Immunol 2012
820
22

Autophagy controls IL-1beta secretion by targeting pro-IL-1beta for degradation.
James Harris, Michelle Hartman, Caitrionna Roche, Shijuan G Zeng, Amy O'Shea, Fiona A Sharp, Eimear M Lambe, Emma M Creagh, Douglas T Golenbock, Jurg Tschopp,[...]. J Biol Chem 2011
539
15

Autophagy in immunity and inflammation.
Beth Levine, Noboru Mizushima, Herbert W Virgin. Nature 2011
14

A genome-wide association scan of nonsynonymous SNPs identifies a susceptibility variant for Crohn disease in ATG16L1.
Jochen Hampe, Andre Franke, Philip Rosenstiel, Andreas Till, Markus Teuber, Klaus Huse, Mario Albrecht, Gabriele Mayr, Francisco M De La Vega, Jason Briggs,[...]. Nat Genet 2007
14


NF-κB Restricts Inflammasome Activation via Elimination of Damaged Mitochondria.
Zhenyu Zhong, Atsushi Umemura, Elsa Sanchez-Lopez, Shuang Liang, Shabnam Shalapour, Jerry Wong, Feng He, Daniela Boassa, Guy Perkins, Syed Raza Ali,[...]. Cell 2016
502
13

The role of Atg proteins in autophagosome formation.
Noboru Mizushima, Tamotsu Yoshimori, Yoshinori Ohsumi. Annu Rev Cell Dev Biol 2011
11

Atg16L1 T300A variant decreases selective autophagy resulting in altered cytokine signaling and decreased antibacterial defense.
Kara G Lassen, Petric Kuballa, Kara L Conway, Khushbu K Patel, Christine E Becker, Joanna M Peloquin, Eduardo J Villablanca, Jason M Norman, Ta-Chiang Liu, Robert J Heath,[...]. Proc Natl Acad Sci U S A 2014
203
11

Mechanism and medical implications of mammalian autophagy.
Ivan Dikic, Zvulun Elazar. Nat Rev Mol Cell Biol 2018
822
11


AMPK and mTOR regulate autophagy through direct phosphorylation of Ulk1.
Joungmok Kim, Mondira Kundu, Benoit Viollet, Kun-Liang Guan. Nat Cell Biol 2011
10

Autophagy-based unconventional secretory pathway for extracellular delivery of IL-1β.
Nicolas Dupont, Shanya Jiang, Manohar Pilli, Wojciech Ornatowski, Dhruva Bhattacharya, Vojo Deretic. EMBO J 2011
546
9

The inflammasomes.
Kate Schroder, Jurg Tschopp. Cell 2010
9

Autophagy: renovation of cells and tissues.
Noboru Mizushima, Masaaki Komatsu. Cell 2011
9

Autophagy-Independent Functions of the Autophagy Machinery.
Lorenzo Galluzzi, Douglas R Green. Cell 2019
206
9

TFEB links autophagy to lysosomal biogenesis.
Carmine Settembre, Chiara Di Malta, Vinicia Assunta Polito, Moises Garcia Arencibia, Francesco Vetrini, Serkan Erdin, Serpil Uckac Erdin, Tuong Huynh, Diego Medina, Pasqualina Colella,[...]. Science 2011
9

Autophagy in infection, inflammation and immunity.
Vojo Deretic, Tatsuya Saitoh, Shizuo Akira. Nat Rev Immunol 2013
9

A Crohn's disease variant in Atg16l1 enhances its degradation by caspase 3.
Aditya Murthy, Yun Li, Ivan Peng, Mike Reichelt, Anand Kumar Katakam, Rajkumar Noubade, Merone Roose-Girma, Jason DeVoss, Lauri Diehl, Robert R Graham,[...]. Nature 2014
234
9

A key role for autophagy and the autophagy gene Atg16l1 in mouse and human intestinal Paneth cells.
Ken Cadwell, John Y Liu, Sarah L Brown, Hiroyuki Miyoshi, Joy Loh, Jochen K Lennerz, Chieko Kishi, Wumesh Kc, Javier A Carrero, Steven Hunt,[...]. Nature 2008
8

Autophagy fights disease through cellular self-digestion.
Noboru Mizushima, Beth Levine, Ana Maria Cuervo, Daniel J Klionsky. Nature 2008
8

Mechanism and Regulation of NLRP3 Inflammasome Activation.
Yuan He, Hideki Hara, Gabriel Núñez. Trends Biochem Sci 2016
955
8

Autophagy protein ATG16L1 prevents necroptosis in the intestinal epithelium.
Yu Matsuzawa-Ishimoto, Yusuke Shono, Luis E Gomez, Vanessa M Hubbard-Lucey, Michael Cammer, Jessica Neil, M Zahidunnabi Dewan, Sophia R Lieberman, Amina Lazrak, Jill M Marinis,[...]. J Exp Med 2017
116
8

Genome-wide association study identifies new susceptibility loci for Crohn disease and implicates autophagy in disease pathogenesis.
John D Rioux, Ramnik J Xavier, Kent D Taylor, Mark S Silverberg, Philippe Goyette, Alan Huett, Todd Green, Petric Kuballa, M Michael Barmada, Lisa Wu Datta,[...]. Nat Genet 2007
8

Inflammasome and autophagy regulation - a two-way street.
Qian Sun, Jie Fan, Timothy R Billiar, Melanie J Scott. Mol Med 2017
82
8

Autophagy and the integrated stress response.
Guido Kroemer, Guillermo Mariño, Beth Levine. Mol Cell 2010
7

In vivo requirement for Atg5 in antigen presentation by dendritic cells.
Heung Kyu Lee, Lisa M Mattei, Benjamin E Steinberg, Philipp Alberts, Yun Hee Lee, Alexander Chervonsky, Noboru Mizushima, Sergio Grinstein, Akiko Iwasaki. Immunity 2010
318
7

The Atg16L complex specifies the site of LC3 lipidation for membrane biogenesis in autophagy.
Naonobu Fujita, Takashi Itoh, Hiroko Omori, Mitsunori Fukuda, Takeshi Noda, Tamotsu Yoshimori. Mol Biol Cell 2008
677
7

Molecular characterization of LC3-associated phagocytosis reveals distinct roles for Rubicon, NOX2 and autophagy proteins.
Jennifer Martinez, R K Subbarao Malireddi, Qun Lu, Larissa Dias Cunha, Stephane Pelletier, Sebastien Gingras, Robert Orchard, Jun-Lin Guan, Haiyan Tan, Junmin Peng,[...]. Nat Cell Biol 2015
419
7

Selective autophagy of the adaptor TRIF regulates innate inflammatory signaling.
Mohammad Samie, Junghyun Lim, Erik Verschueren, Joshua M Baughman, Ivan Peng, Aaron Wong, Youngsu Kwon, Yasin Senbabaoglu, Jason A Hackney, Mary Keir,[...]. Nat Immunol 2018
61
11

The role of autophagy during the early neonatal starvation period.
Akiko Kuma, Masahiko Hatano, Makoto Matsui, Akitsugu Yamamoto, Haruaki Nakaya, Tamotsu Yoshimori, Yoshinori Ohsumi, Takeshi Tokuhisa, Noboru Mizushima. Nature 2004
7

Noncanonical autophagy inhibits the autoinflammatory, lupus-like response to dying cells.
Jennifer Martinez, Larissa D Cunha, Sunmin Park, Mao Yang, Qun Lu, Robert Orchard, Quan-Zhen Li, Mei Yan, Laura Janke, Cliff Guy,[...]. Nature 2016
236
7

Toll-like receptors control autophagy.
Mónica A Delgado, Rasha A Elmaoued, Alexander S Davis, George Kyei, Vojo Deretic. EMBO J 2008
545
6

AMPK phosphorylation of raptor mediates a metabolic checkpoint.
Dana M Gwinn, David B Shackelford, Daniel F Egan, Maria M Mihaylova, Annabelle Mery, Debbie S Vasquez, Benjamin E Turk, Reuben J Shaw. Mol Cell 2008
6

Inflammasome-independent modulation of cytokine response by autophagy in human cells.
Tania O Crişan, Theo S Plantinga, Frank L van de Veerdonk, Marius F Farcaş, Monique Stoffels, Bart-Jan Kullberg, Jos W M van der Meer, Leo A B Joosten, Mihai G Netea. PLoS One 2011
133
6

The WD40 domain of ATG16L1 is required for its non-canonical role in lipidation of LC3 at single membranes.
Katherine Fletcher, Rachel Ulferts, Elise Jacquin, Talitha Veith, Noor Gammoh, Julia M Arasteh, Ulrike Mayer, Simon R Carding, Thomas Wileman, Rupert Beale,[...]. EMBO J 2018
99
6

Autophagy protects against active tuberculosis by suppressing bacterial burden and inflammation.
Eliseo F Castillo, Alexander Dekonenko, John Arko-Mensah, Michael A Mandell, Nicolas Dupont, Shanya Jiang, Monica Delgado-Vargas, Graham S Timmins, Dhruva Bhattacharya, Hongliang Yang,[...]. Proc Natl Acad Sci U S A 2012
283
6

LC3-Associated Endocytosis Facilitates β-Amyloid Clearance and Mitigates Neurodegeneration in Murine Alzheimer's Disease.
Bradlee L Heckmann, Brett J W Teubner, Bart Tummers, Emilio Boada-Romero, Lacie Harris, Mao Yang, Clifford S Guy, Stanislav S Zakharenko, Douglas R Green. Cell 2019
127
6

Microtubule-associated protein 1 light chain 3 alpha (LC3)-associated phagocytosis is required for the efficient clearance of dead cells.
Jennifer Martinez, Johann Almendinger, Andrew Oberst, Rachel Ness, Christopher P Dillon, Patrick Fitzgerald, Michael O Hengartner, Douglas R Green. Proc Natl Acad Sci U S A 2011
402
6

Autophagy-deficient mice develop multiple liver tumors.
Akito Takamura, Masaaki Komatsu, Taichi Hara, Ayako Sakamoto, Chieko Kishi, Satoshi Waguri, Yoshinobu Eishi, Okio Hino, Keiji Tanaka, Noboru Mizushima. Genes Dev 2011
785
6

Promotion of tumorigenesis by heterozygous disruption of the beclin 1 autophagy gene.
Xueping Qu, Jie Yu, Govind Bhagat, Norihiko Furuya, Hanina Hibshoosh, Andrea Troxel, Jeffrey Rosen, Eeva-Liisa Eskelinen, Noboru Mizushima, Yoshinori Ohsumi,[...]. J Clin Invest 2003
6

Autophagy: cellular and molecular mechanisms.
Danielle Glick, Sandra Barth, Kay F Macleod. J Pathol 2010
6

TBK-1 promotes autophagy-mediated antimicrobial defense by controlling autophagosome maturation.
Manohar Pilli, John Arko-Mensah, Marisa Ponpuak, Esteban Roberts, Sharon Master, Michael A Mandell, Nicolas Dupont, Wojciech Ornatowski, Shanya Jiang, Steven B Bradfute,[...]. Immunity 2012
387
6

Autophagy: process and function.
Noboru Mizushima. Genes Dev 2007
6

Caspase-11 cleaves gasdermin D for non-canonical inflammasome signalling.
Nobuhiko Kayagaki, Irma B Stowe, Bettina L Lee, Karen O'Rourke, Keith Anderson, Søren Warming, Trinna Cuellar, Benjamin Haley, Merone Roose-Girma, Qui T Phung,[...]. Nature 2015
6

Atg9a controls dsDNA-driven dynamic translocation of STING and the innate immune response.
Tatsuya Saitoh, Naonobu Fujita, Takuya Hayashi, Keigo Takahara, Takashi Satoh, Hanna Lee, Kohichi Matsunaga, Shun Kageyama, Hiroko Omori, Takeshi Noda,[...]. Proc Natl Acad Sci U S A 2009
475
6

The autophagy gene ATG5 plays an essential role in B lymphocyte development.
Brian C Miller, Zijiang Zhao, Linda M Stephenson, Ken Cadwell, Heather H Pua, Heung Kyu Lee, Noboru N Mizushima, Akiko Iwasaki, You-Wen He, Wojciech Swat,[...]. Autophagy 2008
239
6

Oxidized mitochondrial DNA activates the NLRP3 inflammasome during apoptosis.
Kenichi Shimada, Timothy R Crother, Justin Karlin, Jargalsaikhan Dagvadorj, Norika Chiba, Shuang Chen, V Krishnan Ramanujan, Andrea J Wolf, Laurent Vergnes, David M Ojcius,[...]. Immunity 2012
6

The NLRP3 inflammasome: molecular activation and regulation to therapeutics.
Karen V Swanson, Meng Deng, Jenny P-Y Ting. Nat Rev Immunol 2019
766
6


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.