A citation-based method for searching scientific literature

Takashi Honda, Yoshimitsu Kakuta, Kazumi Kimura, Jyotaro Saho, Makoto Kimura. J Mol Biol 2008
Times Cited: 32







List of co-cited articles
332 articles co-cited >1



Times Cited
  Times     Co-cited
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The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme.
C Guerrier-Takada, K Gardiner, T Marsh, N Pace, S Altman. Cell 1983
68

A fifth protein subunit Ph1496p elevates the optimum temperature for the ribonuclease P activity from Pyrococcus horikoshii OT3.
Hideo Fukuhara, Mayumi Kifusa, Mitsutoshi Watanabe, Atsushi Terada, Takashi Honda, Tomoyuki Numata, Yoshimitsu Kakuta, Makoto Kimura. Biochem Biophys Res Commun 2006
48
65

Reconstitution of archaeal ribonuclease P from RNA and four protein components.
Yoshiaki Kouzuma, Masashi Mizoguchi, Hisanori Takagi, Hideo Fukuhara, Masayo Tsukamoto, Tomoyuki Numata, Makoto Kimura. Biochem Biophys Res Commun 2003
68
65

RNase P RNAs from some Archaea are catalytically active.
J A Pannucci, E S Haas, T A Hall, J K Harris, J W Brown. Proc Natl Acad Sci U S A 1999
175
59

Functional reconstitution and characterization of Pyrococcus furiosus RNase P.
Hsin-Yue Tsai, Dileep K Pulukkunat, Walter K Woznick, Venkat Gopalan. Proc Natl Acad Sci U S A 2006
68
59


Eukaryotic RNase P RNA mediates cleavage in the absence of protein.
Ema Kikovska, Staffan G Svärd, Leif A Kirsebom. Proc Natl Acad Sci U S A 2007
121
56

Crystal structure of the RNA component of bacterial ribonuclease P.
Alfredo Torres-Larios, Kerren K Swinger, Andrey S Krasilnikov, Tao Pan, Alfonso Mondragón. Nature 2005
157
56

Crystal structure of a ribonuclease P protein Ph1601p from Pyrococcus horikoshii OT3: an archaeal homologue of human nuclear ribonuclease P protein Rpp21.
Yoshimitsu Kakuta, Ikuko Ishimatsu, Tomoyuki Numata, Kazumi Kimura, Min Yao, Isao Tanaka, Makoto Kimura. Biochemistry 2005
31
54

Structure of Pfu Pop5, an archaeal RNase P protein.
Ross C Wilson, Christopher J Bohlen, Mark P Foster, Charles E Bell. Proc Natl Acad Sci U S A 2006
39
50

Crystal structure of a bacterial ribonuclease P RNA.
Alexei V Kazantsev, Angelika A Krivenko, Daniel J Harrington, Stephen R Holbrook, Paul D Adams, Norman R Pace. Proc Natl Acad Sci U S A 2005
154
50

Structure of a bacterial ribonuclease P holoenzyme in complex with tRNA.
Nicholas J Reiter, Amy Osterman, Alfredo Torres-Larios, Kerren K Swinger, Tao Pan, Alfonso Mondragón. Nature 2010
180
50



Structure of Mth11/Mth Rpp29, an essential protein subunit of archaeal and eukaryotic RNase P.
William P Boomershine, Craig A McElroy, Hsin-Yue Tsai, Ross C Wilson, Venkat Gopalan, Mark P Foster. Proc Natl Acad Sci U S A 2003
39
46


Ribonuclease P: the evolution of an ancient RNA enzyme.
Scott C Walker, David R Engelke. Crit Rev Biochem Mol Biol 2006
136
46

Ribosomal protein L7Ae is a subunit of archaeal RNase P.
I-Ming Cho, Lien B Lai, Dwi Susanti, Biswarup Mukhopadhyay, Venkat Gopalan. Proc Natl Acad Sci U S A 2010
53
46



Archaeal/eukaryal RNase P: subunits, functions and RNA diversification.
Nayef Jarrous, Venkat Gopalan. Nucleic Acids Res 2010
79
43

The enigma of ribonuclease P evolution.
Enno Hartmann, Roland K Hartmann. Trends Genet 2003
102
40

Crystal structure of archaeal ribonuclease P protein aRpp29 from Archaeoglobus fulgidus.
David J Sidote, Johanna Heideker, David W Hoffman. Biochemistry 2004
22
59

Crystal structure of the ribonuclease P protein Ph1877p from hyperthermophilic archaeon Pyrococcus horikoshii OT3.
Hisanori Takagi, Mitsutoshi Watanabe, Yoshimitsu Kakuta, Ritsu Kamachi, Tomoyuki Numata, Isao Tanaka, Makoto Kimura. Biochem Biophys Res Commun 2004
37
40

Protein-protein interactions in the subunits of ribonuclease P in the hyperthermophilic archaeon Pyrococcus horikoshii OT3.
Mayumi Kifusa, Hideo Fukuhara, Takeshi Hayashi, Makoto Kimura. Biosci Biotechnol Biochem 2005
26
46

RNase P RNA-mediated cleavage.
Leif A Kirsebom, Stefan Trobro. IUBMB Life 2009
37
37

Archaeal homologs of human RNase P protein pairs Pop5 with Rpp30 and Rpp21 with Rpp29 work on distinct functional domains of the RNA subunit.
Takashi Honda, Tadashi Hara, Jinghua Nan, Xjaodong Zhang, Makoto Kimura. Biosci Biotechnol Biochem 2010
17
70

Dissecting functional cooperation among protein subunits in archaeal RNase P, a catalytic ribonucleoprotein complex.
Wen-Yi Chen, Dileep K Pulukkunat, I-Ming Cho, Hsin-Yue Tsai, Venkat Gopalan. Nucleic Acids Res 2010
35
37

RNase P: interface of the RNA and protein worlds.
Donald Evans, Steven M Marquez, Norman R Pace. Trends Biochem Sci 2006
147
34


Eukaryotic ribonucleases P/MRP: the crystal structure of the P3 domain.
Anna Perederina, Olga Esakova, Chao Quan, Elena Khanova, Andrey S Krasilnikov. EMBO J 2010
40
34

Of proteins and RNA: the RNase P/MRP family.
Olga Esakova, Andrey S Krasilnikov. RNA 2010
150
34


New insight into RNase P RNA structure from comparative analysis of the archaeal RNA.
J K Harris, E S Haas, D Williams, D N Frank, J W Brown. RNA 2001
78
31

Ribonuclease P protein structure: evolutionary origins in the translational apparatus.
T Stams, S Niranjanakumari, C A Fierke, D W Christianson. Science 1998
128
31

Uniformity amid diversity in RNase P.
Venkat Gopalan. Proc Natl Acad Sci U S A 2007
26
38

Eukaryotic RNase P: role of RNA and protein subunits of a primordial catalytic ribonucleoprotein in RNA-based catalysis.
Hagit Mann, Yitzhak Ben-Asouli, Aleks Schein, Sana Moussa, Nayef Jarrous. Mol Cell 2003
55
31


NMR structure of an archaeal homologue of ribonuclease P protein Rpp29.
David J Sidote, David W Hoffman. Biochemistry 2003
24
37

High-resolution structure of RNase P protein from Thermotoga maritima.
Alexei V Kazantsev, Angelika A Krivenko, Daniel J Harrington, Richard J Carter, Stephen R Holbrook, Paul D Adams, Norman R Pace. Proc Natl Acad Sci U S A 2003
68
28

Interactions between RNase P protein subunits in archaea.
Thomas A Hall, James W Brown. Archaea 2004
22
40

Interactions among the protein and RNA subunits of Saccharomyces cerevisiae nuclear RNase P.
Felicia Houser-Scott, Shaohua Xiao, Christopher E Millikin, Janice M Zengel, Lasse Lindahl, David R Engelke. Proc Natl Acad Sci U S A 2002
57
28

RNase P without RNA: identification and functional reconstitution of the human mitochondrial tRNA processing enzyme.
Johann Holzmann, Peter Frank, Esther Löffler, Keiryn L Bennett, Christopher Gerner, Walter Rossmanith. Cell 2008
363
28


Protein component of the ribozyme ribonuclease P alters substrate recognition by directly contacting precursor tRNA.
S Niranjanakumari, T Stams, S M Crary, D W Christianson, C A Fierke. Proc Natl Acad Sci U S A 1998
139
25


Specific binding of a Pop6/Pop7 heterodimer to the P3 stem of the yeast RNase MRP and RNase P RNAs.
Anna Perederina, Olga Esakova, Hasan Koc, Mark E Schmitt, Andrey S Krasilnikov. RNA 2007
36
25


Characterization of the archaeal ribonuclease P proteins from Pyrococcus horikoshii OT3.
Atsushi Terada, Takashi Honda, Hideo Fukuhara, Kazumasa Hada, Makoto Kimura. J Biochem 2006
19
42


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.