A citation-based method for searching scientific literature

Robin C Friedman, Kyle Kai-How Farh, Christopher B Burge, David P Bartel. Genome Res 2009
Times Cited: 5574







List of co-cited articles
371 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity




miRBase: from microRNA sequences to function.
Ana Kozomara, Maria Birgaoanu, Sam Griffiths-Jones. Nucleic Acids Res 2019
17

Regulation of microRNA biogenesis.
Minju Ha, V Narry Kim. Nat Rev Mol Cell Biol 2014
15

Predicting effective microRNA target sites in mammalian mRNAs.
Vikram Agarwal, George W Bell, Jin-Wu Nam, David P Bartel. Elife 2015
15

Metazoan MicroRNAs.
David P Bartel. Cell 2018
11

Regulation of microRNA function in animals.
Luca F R Gebert, Ian J MacRae. Nat Rev Mol Cell Biol 2019
834
11


MicroRNA biogenesis pathways in cancer.
Shuibin Lin, Richard I Gregory. Nat Rev Cancer 2015
9


limma powers differential expression analyses for RNA-sequencing and microarray studies.
Matthew E Ritchie, Belinda Phipson, Di Wu, Yifang Hu, Charity W Law, Wei Shi, Gordon K Smyth. Nucleic Acids Res 2015
7

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
7


MicroRNA targeting specificity in mammals: determinants beyond seed pairing.
Andrew Grimson, Kyle Kai-How Farh, Wendy K Johnston, Philip Garrett-Engele, Lee P Lim, David P Bartel. Mol Cell 2007
6

Prediction of mammalian microRNA targets.
Benjamin P Lewis, I-hung Shih, Matthew W Jones-Rhoades, David P Bartel, Christopher B Burge. Cell 2003
6

Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight?
Witold Filipowicz, Suvendra N Bhattacharyya, Nahum Sonenberg. Nat Rev Genet 2008
6

The biochemical basis of microRNA targeting efficacy.
Sean E McGeary, Kathy S Lin, Charlie Y Shi, Thy M Pham, Namita Bisaria, Gina M Kelley, David P Bartel. Science 2019
126
6

An overview of microRNAs.
Scott M Hammond. Adv Drug Deliv Rev 2015
759
6

MicroRNA targets in Drosophila.
Anton J Enright, Bino John, Ulrike Gaul, Thomas Tuschl, Chris Sander, Debora S Marks. Genome Biol 2003
5


NF-kappaB-dependent induction of microRNA miR-146, an inhibitor targeted to signaling proteins of innate immune responses.
Konstantin D Taganov, Mark P Boldin, Kuang-Jung Chang, David Baltimore. Proc Natl Acad Sci U S A 2006
5

Silencing of microRNAs in vivo with 'antagomirs'.
Jan Krützfeldt, Nikolaus Rajewsky, Ravi Braich, Kallanthottathil G Rajeev, Thomas Tuschl, Muthiah Manoharan, Markus Stoffel. Nature 2005
5

Mapping the human miRNA interactome by CLASH reveals frequent noncanonical binding.
Aleksandra Helwak, Grzegorz Kudla, Tatiana Dudnakova, David Tollervey. Cell 2013
792
5

Overview of MicroRNA Biogenesis, Mechanisms of Actions, and Circulation.
Jacob O'Brien, Heyam Hayder, Yara Zayed, Chun Peng. Front Endocrinol (Lausanne) 2018
5

clusterProfiler: an R package for comparing biological themes among gene clusters.
Guangchuang Yu, Li-Gen Wang, Yanyan Han, Qing-Yu He. OMICS 2012
5

Regulation of microRNA biogenesis and its crosstalk with other cellular pathways.
Thomas Treiber, Nora Treiber, Gunter Meister. Nat Rev Mol Cell Biol 2019
504
4


The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans.
B J Reinhart, F J Slack, M Basson, A E Pasquinelli, J C Bettinger, A E Rougvie, H R Horvitz, G Ruvkun. Nature 2000
4

The role of site accessibility in microRNA target recognition.
Michael Kertesz, Nicola Iovino, Ulrich Unnerstall, Ulrike Gaul, Eran Segal. Nat Genet 2007
4

Fast and effective prediction of microRNA/target duplexes.
Marc Rehmsmeier, Peter Steffen, Matthias Hochsmann, Robert Giegerich. RNA 2004
4


miRBase: annotating high confidence microRNAs using deep sequencing data.
Ana Kozomara, Sam Griffiths-Jones. Nucleic Acids Res 2014
4

MicroRNAs in cancer.
Yong Sun Lee, Anindya Dutta. Annu Rev Pathol 2009
815
4

The Drosha-DGCR8 complex in primary microRNA processing.
Jinju Han, Yoontae Lee, Kyu-Hyun Yeom, Young-Kook Kim, Hua Jin, V Narry Kim. Genes Dev 2004
4

MicroRNA genes are transcribed by RNA polymerase II.
Yoontae Lee, Minju Kim, Jinju Han, Kyu-Hyun Yeom, Sanghyuk Lee, Sung Hee Baek, V Narry Kim. EMBO J 2004
4

MicroRNA maturation: stepwise processing and subcellular localization.
Yoontae Lee, Kipyoung Jeon, Jun-Tae Lee, Sunyoung Kim, V Narry Kim. EMBO J 2002
4

miRBase: microRNA sequences, targets and gene nomenclature.
Sam Griffiths-Jones, Russell J Grocock, Stijn van Dongen, Alex Bateman, Anton J Enright. Nucleic Acids Res 2006
4

Single-Molecule Imaging Reveals that Argonaute Reshapes the Binding Properties of Its Nucleic Acid Guides.
William E Salomon, Samson M Jolly, Melissa J Moore, Phillip D Zamore, Victor Serebrov. Cell 2015
141
4

The widespread regulation of microRNA biogenesis, function and decay.
Jacek Krol, Inga Loedige, Witold Filipowicz. Nat Rev Genet 2010
4

An estimate of the total number of true human miRNAs.
Julia Alles, Tobias Fehlmann, Ulrike Fischer, Christina Backes, Valentina Galata, Marie Minet, Martin Hart, Masood Abu-Halima, Friedrich A Grässer, Hans-Peter Lenhof,[...]. Nucleic Acids Res 2019
203
4

Natural RNA circles function as efficient microRNA sponges.
Thomas B Hansen, Trine I Jensen, Bettina H Clausen, Jesper B Bramsen, Bente Finsen, Christian K Damgaard, Jørgen Kjems. Nature 2013
4

The Risks of miRNA Therapeutics: In a Drug Target Perspective.
Song Zhang, Zhujun Cheng, Yanan Wang, Tianyu Han. Drug Des Devel Ther 2021
39
10

The nuclear RNase III Drosha initiates microRNA processing.
Yoontae Lee, Chiyoung Ahn, Jinju Han, Hyounjeong Choi, Jaekwang Kim, Jeongbin Yim, Junho Lee, Patrick Provost, Olof Rådmark, Sunyoung Kim,[...]. Nature 2003
4

Distribution of miRNA expression across human tissues.
Nicole Ludwig, Petra Leidinger, Kurt Becker, Christina Backes, Tobias Fehlmann, Christian Pallasch, Steffi Rheinheimer, Benjamin Meder, Cord Stähler, Eckart Meese,[...]. Nucleic Acids Res 2016
509
4

The microRNA spectrum in 12 body fluids.
Jessica A Weber, David H Baxter, Shile Zhang, David Y Huang, Kuo How Huang, Ming Jen Lee, David J Galas, Kai Wang. Clin Chem 2010
4

Treatment of HCV infection by targeting microRNA.
Harry L A Janssen, Hendrik W Reesink, Eric J Lawitz, Stefan Zeuzem, Maribel Rodriguez-Torres, Keyur Patel, Adriaan J van der Meer, Amy K Patick, Alice Chen, Yi Zhou,[...]. N Engl J Med 2013
4

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources.
Da Wei Huang, Brad T Sherman, Richard A Lempicki. Nat Protoc 2009
4

Fast gapped-read alignment with Bowtie 2.
Ben Langmead, Steven L Salzberg. Nat Methods 2012
4

A ceRNA hypothesis: the Rosetta Stone of a hidden RNA language?
Leonardo Salmena, Laura Poliseno, Yvonne Tay, Lev Kats, Pier Paolo Pandolfi. Cell 2011
4

MirGeneDB 2.0: the metazoan microRNA complement.
Bastian Fromm, Diana Domanska, Eirik Høye, Vladimir Ovchinnikov, Wenjing Kang, Ernesto Aparicio-Puerta, Morten Johansen, Kjersti Flatmark, Anthony Mathelier, Eivind Hovig,[...]. Nucleic Acids Res 2020
94
4


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.