A citation-based method for searching scientific literature

Robin C Friedman, Kyle Kai-How Farh, Christopher B Burge, David P Bartel. Genome Res 2009
Times Cited: 5253







List of co-cited articles
612 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity






Metazoan MicroRNAs.
David P Bartel. Cell 2018
13

Regulation of microRNA biogenesis.
Minju Ha, V Narry Kim. Nat Rev Mol Cell Biol 2014
12

Overview of MicroRNA Biogenesis, Mechanisms of Actions, and Circulation.
Jacob O'Brien, Heyam Hayder, Yara Zayed, Chun Peng. Front Endocrinol (Lausanne) 2018
752
12

Predicting effective microRNA target sites in mammalian mRNAs.
Vikram Agarwal, George W Bell, Jin-Wu Nam, David P Bartel. Elife 2015
10

miRBase: from microRNA sequences to function.
Ana Kozomara, Maria Birgaoanu, Sam Griffiths-Jones. Nucleic Acids Res 2019
845
8

Regulation of microRNA function in animals.
Luca F R Gebert, Ian J MacRae. Nat Rev Mol Cell Biol 2019
637
8

The widespread regulation of microRNA biogenesis, function and decay.
Jacek Krol, Inga Loedige, Witold Filipowicz. Nat Rev Genet 2010
8

Circulating microRNAs as stable blood-based markers for cancer detection.
Patrick S Mitchell, Rachael K Parkin, Evan M Kroh, Brian R Fritz, Stacia K Wyman, Era L Pogosova-Agadjanyan, Amelia Peterson, Jennifer Noteboom, Kathy C O'Briant, April Allen,[...]. Proc Natl Acad Sci U S A 2008
8


Identification of mammalian microRNA host genes and transcription units.
Antony Rodriguez, Sam Griffiths-Jones, Jennifer L Ashurst, Allan Bradley. Genome Res 2004
7

Circular RNAs are a large class of animal RNAs with regulatory potency.
Sebastian Memczak, Marvin Jens, Antigoni Elefsinioti, Francesca Torti, Janna Krueger, Agnieszka Rybak, Luisa Maier, Sebastian D Mackowiak, Lea H Gregersen, Mathias Munschauer,[...]. Nature 2013
7

miRBase: microRNA sequences, targets and gene nomenclature.
Sam Griffiths-Jones, Russell J Grocock, Stijn van Dongen, Alex Bateman, Anton J Enright. Nucleic Acids Res 2006
7

MicroRNA targets in Drosophila.
Anton J Enright, Bino John, Ulrike Gaul, Thomas Tuschl, Chris Sander, Debora S Marks. Genome Biol 2003
7

Transactivation of miR-34a by p53 broadly influences gene expression and promotes apoptosis.
Tsung-Cheng Chang, Erik A Wentzel, Oliver A Kent, Kalyani Ramachandran, Michael Mullendore, Kwang Hyuck Lee, Georg Feldmann, Munekazu Yamakuchi, Marcella Ferlito, Charles J Lowenstein,[...]. Mol Cell 2007
7

A ceRNA hypothesis: the Rosetta Stone of a hidden RNA language?
Leonardo Salmena, Laura Poliseno, Yvonne Tay, Lev Kats, Pier Paolo Pandolfi. Cell 2011
7

Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP.
Markus Hafner, Markus Landthaler, Lukas Burger, Mohsen Khorshid, Jean Hausser, Philipp Berninger, Andrea Rothballer, Manuel Ascano, Anna-Carina Jungkamp, Mathias Munschauer,[...]. Cell 2010
6


edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.
Mark D Robinson, Davis J McCarthy, Gordon K Smyth. Bioinformatics 2010
6

The microRNA.org resource: targets and expression.
Doron Betel, Manda Wilson, Aaron Gabow, Debora S Marks, Chris Sander. Nucleic Acids Res 2008
6

Combinatorial microRNA target predictions.
Azra Krek, Dominic Grün, Matthew N Poy, Rachel Wolf, Lauren Rosenberg, Eric J Epstein, Philip MacMenamin, Isabelle da Piedade, Kristin C Gunsalus, Markus Stoffel,[...]. Nat Genet 2005
6

Exosome-mediated transfer of mRNAs and microRNAs is a novel mechanism of genetic exchange between cells.
Hadi Valadi, Karin Ekström, Apostolos Bossios, Margareta Sjöstrand, James J Lee, Jan O Lötvall. Nat Cell Biol 2007
6

MicroRNA expression profiles classify human cancers.
Jun Lu, Gad Getz, Eric A Miska, Ezequiel Alvarez-Saavedra, Justin Lamb, David Peck, Alejandro Sweet-Cordero, Benjamin L Ebert, Raymond H Mak, Adolfo A Ferrando,[...]. Nature 2005
5


Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs.
Lee P Lim, Nelson C Lau, Philip Garrett-Engele, Andrew Grimson, Janell M Schelter, John Castle, David P Bartel, Peter S Linsley, Jason M Johnson. Nature 2005
5

Regulation of microRNA biogenesis and its crosstalk with other cellular pathways.
Thomas Treiber, Nora Treiber, Gunter Meister. Nat Rev Mol Cell Biol 2019
377
5

Mapping the human miRNA interactome by CLASH reveals frequent noncanonical binding.
Aleksandra Helwak, Grzegorz Kudla, Tatiana Dudnakova, David Tollervey. Cell 2013
725
5

Natural RNA circles function as efficient microRNA sponges.
Thomas B Hansen, Trine I Jensen, Bettina H Clausen, Jesper B Bramsen, Bente Finsen, Christian K Damgaard, Jørgen Kjems. Nature 2013
5

Cancer statistics, 2020.
Rebecca L Siegel, Kimberly D Miller, Ahmedin Jemal. CA Cancer J Clin 2020
5

Towards a molecular understanding of microRNA-mediated gene silencing.
Stefanie Jonas, Elisa Izaurralde. Nat Rev Genet 2015
891
5

An estimate of the total number of true human miRNAs.
Julia Alles, Tobias Fehlmann, Ulrike Fischer, Christina Backes, Valentina Galata, Marie Minet, Martin Hart, Masood Abu-Halima, Friedrich A Grässer, Hans-Peter Lenhof,[...]. Nucleic Acids Res 2019
144
5

Fast and effective prediction of microRNA/target duplexes.
Marc Rehmsmeier, Peter Steffen, Matthias Hochsmann, Robert Giegerich. RNA 2004
5

The impact of microRNAs on protein output.
Daehyun Baek, Judit Villén, Chanseok Shin, Fernando D Camargo, Steven P Gygi, David P Bartel. Nature 2008
5

Prediction of mammalian microRNA targets.
Benjamin P Lewis, I-hung Shih, Matthew W Jones-Rhoades, David P Bartel, Christopher B Burge. Cell 2003
5

MicroRNA biogenesis pathways in cancer.
Shuibin Lin, Richard I Gregory. Nat Rev Cancer 2015
5

MicroRNA targeting specificity in mammals: determinants beyond seed pairing.
Andrew Grimson, Kyle Kai-How Farh, Wendy K Johnston, Philip Garrett-Engele, Lee P Lim, David P Bartel. Mol Cell 2007
5

The role of site accessibility in microRNA target recognition.
Michael Kertesz, Nicola Iovino, Ulrich Unnerstall, Ulrike Gaul, Eran Segal. Nat Genet 2007
5

Phase I study of MRX34, a liposomal miR-34a mimic, administered twice weekly in patients with advanced solid tumors.
Muhammad S Beg, Andrew J Brenner, Jasgit Sachdev, Mitesh Borad, Yoon-Koo Kang, Jay Stoudemire, Susan Smith, Andreas G Bader, Sinil Kim, David S Hong. Invest New Drugs 2017
383
5

MicroRNA sponges: competitive inhibitors of small RNAs in mammalian cells.
Margaret S Ebert, Joel R Neilson, Phillip A Sharp. Nat Methods 2007
5

Identification of tissue-specific microRNAs from mouse.
Mariana Lagos-Quintana, Reinhard Rauhut, Abdullah Yalcin, Jutta Meyer, Winfried Lendeckel, Thomas Tuschl. Curr Biol 2002
5

Non-coding RNAs in human disease.
Manel Esteller. Nat Rev Genet 2011
5

Argonaute2 complexes carry a population of circulating microRNAs independent of vesicles in human plasma.
Jason D Arroyo, John R Chevillet, Evan M Kroh, Ingrid K Ruf, Colin C Pritchard, Donald F Gibson, Patrick S Mitchell, Christopher F Bennett, Era L Pogosova-Agadjanyan, Derek L Stirewalt,[...]. Proc Natl Acad Sci U S A 2011
5

Detecting and characterizing circular RNAs.
William R Jeck, Norman E Sharpless. Nat Biotechnol 2014
5

Pairing beyond the Seed Supports MicroRNA Targeting Specificity.
James P Broughton, Michael T Lovci, Jessica L Huang, Gene W Yeo, Amy E Pasquinelli. Mol Cell 2016
146
5

The microRNA spectrum in 12 body fluids.
Jessica A Weber, David H Baxter, Shile Zhang, David Y Huang, Kuo How Huang, Ming Jen Lee, David J Galas, Kai Wang. Clin Chem 2010
5

MicroRNA genes are transcribed by RNA polymerase II.
Yoontae Lee, Minju Kim, Jinju Han, Kyu-Hyun Yeom, Sanghyuk Lee, Sung Hee Baek, V Narry Kim. EMBO J 2004
4

Mammalian 5'-capped microRNA precursors that generate a single microRNA.
Mingyi Xie, Mingfeng Li, Anna Vilborg, Nara Lee, Mei-Di Shu, Valeria Yartseva, Nenad Šestan, Joan A Steitz. Cell 2013
115
4


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.