A citation-based method for searching scientific literature

Gerhard Mittler, Falk Butter, Matthias Mann. Genome Res 2009
Times Cited: 119







List of co-cited articles
905 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics.
Shao-En Ong, Blagoy Blagoev, Irina Kratchmarova, Dan Bach Kristensen, Hanno Steen, Akhilesh Pandey, Matthias Mann. Mol Cell Proteomics 2002
35

Purification of proteins associated with specific genomic Loci.
Jérôme Déjardin, Robert E Kingston. Cell 2009
356
32


Quantitative interaction proteomics and genome-wide profiling of epigenetic histone marks and their readers.
Michiel Vermeulen, H Christian Eberl, Filomena Matarese, Hendrik Marks, Sergei Denissov, Falk Butter, Kenneth K Lee, Jesper V Olsen, Anthony A Hyman, Henk G Stunnenberg,[...]. Cell 2010
522
20

Unbiased RNA-protein interaction screen by quantitative proteomics.
Falk Butter, Marion Scheibe, Mario Mörl, Matthias Mann. Proc Natl Acad Sci U S A 2009
100
18

Nucleosome-interacting proteins regulated by DNA and histone methylation.
Till Bartke, Michiel Vermeulen, Blerta Xhemalce, Samuel C Robson, Matthias Mann, Tony Kouzarides. Cell 2010
399
18

Selective anchoring of TFIID to nucleosomes by trimethylation of histone H3 lysine 4.
Michiel Vermeulen, Klaas W Mulder, Sergei Denissov, W W M Pim Pijnappel, Frederik M A van Schaik, Radhika A Varier, Marijke P A Baltissen, Henk G Stunnenberg, Matthias Mann, H Th Marc Timmers. Cell 2007
591
17

Dynamic readers for 5-(hydroxy)methylcytosine and its oxidized derivatives.
Cornelia G Spruijt, Felix Gnerlich, Arne H Smits, Toni Pfaffeneder, Pascal W T C Jansen, Christina Bauer, Martin Münzel, Mirko Wagner, Markus Müller, Fariha Khan,[...]. Cell 2013
677
16

A SILAC-based screen for Methyl-CpG binding proteins identifies RBP-J as a DNA methylation and sequence-specific binding protein.
Stefanie J J Bartels, Cornelia G Spruijt, Arie B Brinkman, Pascal W T C Jansen, Michiel Vermeulen, Hendrik G Stunnenberg. PLoS One 2011
39
35

Super-SILAC mix for quantitative proteomics of human tumor tissue.
Tamar Geiger, Juergen Cox, Pawel Ostasiewicz, Jacek R Wisniewski, Matthias Mann. Nat Methods 2010
370
13

High confidence determination of specific protein-protein interactions using quantitative mass spectrometry.
Michiel Vermeulen, Nina C Hubner, Matthias Mann. Curr Opin Biotechnol 2008
126
13


Tandem mass tags: a novel quantification strategy for comparative analysis of complex protein mixtures by MS/MS.
Andrew Thompson, Jürgen Schäfer, Karsten Kuhn, Stefan Kienle, Josef Schwarz, Günter Schmidt, Thomas Neumann, R Johnstone, A Karim A Mohammed, Christian Hamon. Anal Chem 2003
12

A novel proteomics approach for the discovery of chromatin-associated protein networks.
Jean-Philippe Lambert, Leslie Mitchell, Adam Rudner, Kristin Baetz, Daniel Figeys. Mol Cell Proteomics 2009
82
14

A domesticated transposon mediates the effects of a single-nucleotide polymorphism responsible for enhanced muscle growth.
Falk Butter, Dennis Kappei, Frank Buchholz, Michiel Vermeulen, Matthias Mann. EMBO Rep 2010
41
29

The study of macromolecular complexes by quantitative proteomics.
Jeffrey A Ranish, Eugene C Yi, Deena M Leslie, Samuel O Purvine, David R Goodlett, Jimmy Eng, Ruedi Aebersold. Nat Genet 2003
278
12

Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents.
Philip L Ross, Yulin N Huang, Jason N Marchese, Brian Williamson, Kenneth Parker, Stephen Hattan, Nikita Khainovski, Sasi Pillai, Subhakar Dey, Scott Daniels,[...]. Mol Cell Proteomics 2004
11

Quantitative proteomics combined with BAC TransgeneOmics reveals in vivo protein interactions.
Nina C Hubner, Alexander W Bird, Jürgen Cox, Bianca Splettstoesser, Peter Bandilla, Ina Poser, Anthony Hyman, Matthias Mann. J Cell Biol 2010
319
11


Lysine acetylation targets protein complexes and co-regulates major cellular functions.
Chunaram Choudhary, Chanchal Kumar, Florian Gnad, Michael L Nielsen, Michael Rehman, Tobias C Walther, Jesper V Olsen, Matthias Mann. Science 2009
10

A practical guide to the MaxQuant computational platform for SILAC-based quantitative proteomics.
Jürgen Cox, Ivan Matic, Maximiliane Hilger, Nagarjuna Nagaraj, Matthias Selbach, Jesper V Olsen, Matthias Mann. Nat Protoc 2009
589
10

Functional and quantitative proteomics using SILAC.
Matthias Mann. Nat Rev Mol Cell Biol 2006
692
10


Global quantification of mammalian gene expression control.
Björn Schwanhäusser, Dorothea Busse, Na Li, Gunnar Dittmar, Johannes Schuchhardt, Jana Wolf, Wei Chen, Matthias Selbach. Nature 2011
10

Proteome-wide analysis of disease-associated SNPs that show allele-specific transcription factor binding.
Falk Butter, Lucy Davison, Tar Viturawong, Marion Scheibe, Michiel Vermeulen, John A Todd, Matthias Mann. PLoS Genet 2012
69
14

Quantitative analysis of complex protein mixtures using isotope-coded affinity tags.
S P Gygi, B Rist, S A Gerber, F Turecek, M H Gelb, R Aebersold. Nat Biotechnol 1999
9


Defining the human deubiquitinating enzyme interaction landscape.
Mathew E Sowa, Eric J Bennett, Steven P Gygi, J Wade Harper. Cell 2009
9

Identifying and quantifying in vivo methylation sites by heavy methyl SILAC.
Shao-En Ong, Gerhard Mittler, Matthias Mann. Nat Methods 2004
324
9

Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast.
Lyris M F de Godoy, Jesper V Olsen, Jürgen Cox, Michael L Nielsen, Nina C Hubner, Florian Fröhlich, Tobias C Walther, Matthias Mann. Nature 2008
686
9

Universal sample preparation method for proteome analysis.
Jacek R Wiśniewski, Alexandre Zougman, Nagarjuna Nagaraj, Matthias Mann. Nat Methods 2009
9

The language of covalent histone modifications.
B D Strahl, C D Allis. Nature 2000
9

Chromatin affinity purification and quantitative mass spectrometry defining the interactome of histone modification patterns.
Miroslav Nikolov, Alexandra Stützer, Kerstin Mosch, Andrius Krasauskas, Szabolcs Soeroes, Holger Stark, Henning Urlaub, Wolfgang Fischle. Mol Cell Proteomics 2011
63
14

Identifying the proteins to which small-molecule probes and drugs bind in cells.
Shao-En Ong, Monica Schenone, Adam A Margolin, Xiaoyu Li, Kathy Do, Mary K Doud, D R Mani, Letian Kuai, Xiang Wang, John L Wood,[...]. Proc Natl Acad Sci U S A 2009
224
8

In vivo residue-specific histone methylation dynamics.
Barry M Zee, Rebecca S Levin, Bo Xu, Gary LeRoy, Ned S Wingreen, Benjamin A Garcia. J Biol Chem 2010
175
8

BAC TransgeneOmics: a high-throughput method for exploration of protein function in mammals.
Ina Poser, Mihail Sarov, James R A Hutchins, Jean-Karim Hériché, Yusuke Toyoda, Andrei Pozniakovsky, Daniela Weigl, Anja Nitzsche, Björn Hegemann, Alexander W Bird,[...]. Nat Methods 2008
450
8


Global landscape of protein complexes in the yeast Saccharomyces cerevisiae.
Nevan J Krogan, Gerard Cagney, Haiyuan Yu, Gouqing Zhong, Xinghua Guo, Alexandr Ignatchenko, Joyce Li, Shuye Pu, Nira Datta, Aaron P Tikuisis,[...]. Nature 2006
8

Quantitative proteomics for epigenetics.
H Christian Eberl, Matthias Mann, Michiel Vermeulen. Chembiochem 2011
45
17

A novel proteomic screen for peptide-protein interactions.
Waltraud X Schulze, Matthias Mann. J Biol Chem 2004
235
8

Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing.
Gordon Robertson, Martin Hirst, Matthew Bainbridge, Misha Bilenky, Yongjun Zhao, Thomas Zeng, Ghia Euskirchen, Bridget Bernier, Richard Varhol, Allen Delaney,[...]. Nat Methods 2007
937
8

Quantitative proteomic identification of six4 as the trex-binding factor in the muscle creatine kinase enhancer.
Charis L Himeda, Jeffrey A Ranish, John C Angello, Pascal Maire, Ruedi Aebersold, Stephen D Hauschka. Mol Cell Biol 2004
61
13


Identifying specific protein interaction partners using quantitative mass spectrometry and bead proteomes.
Laura Trinkle-Mulcahy, Séverine Boulon, Yun Wah Lam, Roby Urcia, François-Michel Boisvert, Franck Vandermoere, Nick A Morrice, Sam Swift, Ulrich Rothbauer, Heinrich Leonhardt,[...]. J Cell Biol 2008
330
8

In-gel digestion for mass spectrometric characterization of proteins and proteomes.
Andrej Shevchenko, Henrik Tomas, Jan Havlis, Jesper V Olsen, Matthias Mann. Nat Protoc 2006
8


SILAC mouse for quantitative proteomics uncovers kindlin-3 as an essential factor for red blood cell function.
Marcus Krüger, Markus Moser, Siegfried Ussar, Ingo Thievessen, Christian A Luber, Francesca Forner, Sarah Schmidt, Sara Zanivan, Reinhard Fässler, Matthias Mann. Cell 2008
480
7

Multiplex peptide stable isotope dimethyl labeling for quantitative proteomics.
Paul J Boersema, Reinout Raijmakers, Simone Lemeer, Shabaz Mohammed, Albert J R Heck. Nat Protoc 2009
947
7

Defining the budding yeast chromatin-associated interactome.
Jean-Philippe Lambert, Jeffrey Fillingham, Mojgan Siahbazi, Jack Greenblatt, Kristin Baetz, Daniel Figeys. Mol Syst Biol 2010
50
14

Use of stable isotope labeling by amino acids in cell culture as a spike-in standard in quantitative proteomics.
Tamar Geiger, Jacek R Wisniewski, Juergen Cox, Sara Zanivan, Marcus Kruger, Yasushi Ishihama, Matthias Mann. Nat Protoc 2011
216
7


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.