A citation-based method for searching scientific literature

Richard Pokorny, Tobias Klar, Ulrich Hennecke, Thomas Carell, Alfred Batschauer, Lars-Oliver Essen. Proc Natl Acad Sci U S A 2008
Times Cited: 127







List of co-cited articles
1143 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity




The cryptochromes: blue light photoreceptors in plants and animals.
Inês Chaves, Richard Pokorny, Martin Byrdin, Nathalie Hoang, Thorsten Ritz, Klaus Brettel, Lars-Oliver Essen, Gijsbertus T J van der Horst, Alfred Batschauer, Margaret Ahmad. Annu Rev Plant Biol 2011
496
58

Identification of a new cryptochrome class. Structure, function, and evolution.
Ronald Brudler, Kenichi Hitomi, Hiromi Daiyasu, Hiroyuki Toh, Ken-ichi Kucho, Masahiro Ishiura, Minoru Kanehisa, Victoria A Roberts, Takeshi Todo, John A Tainer,[...]. Mol Cell 2003
228
44


Crystal structure of cryptochrome 3 from Arabidopsis thaliana and its implications for photolyase activity.
Yihua Huang, Richard Baxter, Barbara S Smith, Carrie L Partch, Christopher L Colbert, Johann Deisenhofer. Proc Natl Acad Sci U S A 2006
93
29

Characterization of two members of the cryptochrome/photolyase family from Ostreococcus tauri provides insights into the origin and evolution of cryptochromes.
Marc Heijde, Gérald Zabulon, Florence Corellou, Tomoko Ishikawa, Johanna Brazard, Anwar Usman, Frédéric Sanchez, Pascal Plaza, Monique Martin, Angela Falciatore,[...]. Plant Cell Environ 2010
89
29

Cryptochrome 3 from Arabidopsis thaliana: structural and functional analysis of its complex with a folate light antenna.
Tobias Klar, Richard Pokorny, Julia Moldt, Alfred Batschauer, Lars-Oliver Essen. J Mol Biol 2007
62
41

CryB from Rhodobacter sphaeroides: a unique class of cryptochromes with new cofactors.
Yann Geisselbrecht, Sebastian Frühwirth, Claudia Schroeder, Antonio J Pierik, Gabriele Klug, Lars-Oliver Essen. EMBO Rep 2012
66
39

The C termini of Arabidopsis cryptochromes mediate a constitutive light response.
H Q Yang, Y J Wu, R H Tang, D Liu, Y Liu, A R Cashmore. Cell 2000
285
25


Structure of the photolyase-like domain of cryptochrome 1 from Arabidopsis thaliana.
Chad A Brautigam, Barbara S Smith, Zhiquan Ma, Maya Palnitkar, Diana R Tomchick, Mischa Machius, Johann Deisenhofer. Proc Natl Acad Sci U S A 2004
218
24

Crystal structures of an archaeal class II DNA photolyase and its complex with UV-damaged duplex DNA.
Stephan Kiontke, Yann Geisselbrecht, Richard Pokorny, Thomas Carell, Alfred Batschauer, Lars-Oliver Essen. EMBO J 2011
67
35

Crystal structure of DNA photolyase from Escherichia coli.
H W Park, S T Kim, A Sancar, J Deisenhofer. Science 1995
396
23

Functional motifs in the (6-4) photolyase crystal structure make a comparative framework for DNA repair photolyases and clock cryptochromes.
Kenichi Hitomi, Luciano DiTacchio, Andrew S Arvai, Junpei Yamamoto, Sang-Tae Kim, Takeshi Todo, John A Tainer, Shigenori Iwai, Satchidananda Panda, Elizabeth D Getzoff. Proc Natl Acad Sci U S A 2009
92
23

Crystal structure of a photolyase bound to a CPD-like DNA lesion after in situ repair.
Alexandra Mees, Tobias Klar, Petra Gnau, Ulrich Hennecke, Andre P M Eker, Thomas Carell, Lars-Oliver Essen. Science 2004
268
21

Crystal structure of a prokaryotic (6-4) photolyase with an Fe-S cluster and a 6,7-dimethyl-8-ribityllumazine antenna chromophore.
Fan Zhang, Patrick Scheerer, Inga Oberpichler, Tilman Lamparter, Norbert Krauß. Proc Natl Acad Sci U S A 2013
63
33

Crystal structure and mechanism of a DNA (6-4) photolyase.
Melanie J Maul, Thomas R M Barends, Andreas F Glas, Max J Cryle, Tatiana Domratcheva, Sabine Schneider, Ilme Schlichting, Thomas Carell. Angew Chem Int Ed Engl 2008
139
20

Cryptochrome blue light photoreceptors are activated through interconversion of flavin redox states.
Jean-Pierre Bouly, Erik Schleicher, Maribel Dionisio-Sese, Filip Vandenbussche, Dominique Van Der Straeten, Nadia Bakrim, Stefan Meier, Alfred Batschauer, Paul Galland, Robert Bittl,[...]. J Biol Chem 2007
252
20

Structural biology of DNA photolyases and cryptochromes.
Markus Müller, Thomas Carell. Curr Opin Struct Biol 2009
88
21

Intraprotein radical transfer during photoactivation of DNA photolyase.
C Aubert, M H Vos, P Mathis, A P Eker, K Brettel. Nature 2000
319
19

Photoexcited CRY2 interacts with CIB1 to regulate transcription and floral initiation in Arabidopsis.
Hongtao Liu, Xuhong Yu, Kunwu Li, John Klejnot, Hongyun Yang, Dominique Lisiero, Chentao Lin. Science 2008
452
19

Diatom PtCPF1 is a new cryptochrome/photolyase family member with DNA repair and transcription regulation activity.
Sacha Coesel, Manuela Mangogna, Tomoko Ishikawa, Marc Heijde, Alessandra Rogato, Giovanni Finazzi, Takeshi Todo, Chris Bowler, Angela Falciatore. EMBO Rep 2009
122
19

The cryptochromes.
Chentao Lin, Takeshi Todo. Genome Biol 2005
216
18

Blue-light-induced changes in Arabidopsis cryptochrome 1 probed by FTIR difference spectroscopy.
Tilman Kottke, Alfred Batschauer, Margaret Ahmad, Joachim Heberle. Biochemistry 2006
86
20

Blue light induces radical formation and autophosphorylation in the light-sensitive domain of Chlamydomonas cryptochrome.
Dominik Immeln, Ramona Schlesinger, Joachim Heberle, Tilman Kottke. J Biol Chem 2007
55
32

Role of structural plasticity in signal transduction by the cryptochrome blue-light photoreceptor.
Carrie L Partch, Michael W Clarkson, Sezgin Ozgür, Andrew L Lee, Aziz Sancar. Biochemistry 2005
140
18

The signaling state of Arabidopsis cryptochrome 2 contains flavin semiquinone.
Roopa Banerjee, Erik Schleicher, Stefan Meier, Rafael Muñoz Viana, Richard Pokorny, Margaret Ahmad, Robert Bittl, Alfred Batschauer. J Biol Chem 2007
167
18

Cryptochromes: blue light receptors for plants and animals.
A R Cashmore, J A Jarillo, Y J Wu, D Liu. Science 1999
612
18

Light-dependent functions of the Fusarium fujikuroi CryD DASH cryptochrome in development and secondary metabolism.
Marta Castrillo, Jorge García-Martínez, Javier Avalos. Appl Environ Microbiol 2013
45
40

Reaction mechanisms of DNA photolyase.
Klaus Brettel, Martin Byrdin. Curr Opin Struct Biol 2010
112
17

A novel photoreaction mechanism for the circadian blue light photoreceptor Drosophila cryptochrome.
Alex Berndt, Tilman Kottke, Helena Breitkreuz, Radovan Dvorsky, Sven Hennig, Michael Alexander, Eva Wolf. J Biol Chem 2007
146
17

Identification of cryptochrome DASH from vertebrates.
Hiromi Daiyasu, Tomoko Ishikawa, Kei-ichi Kuma, Shigenori Iwai, Takeshi Todo, Hiroyuki Toh. Genes Cells 2004
86
19

Enhancement of blue-light sensitivity of Arabidopsis seedlings by a blue light receptor cryptochrome 2.
C Lin, H Yang, H Guo, T Mockler, J Chen, A R Cashmore. Proc Natl Acad Sci U S A 1998
325
17

Dynamics and mechanism of repair of ultraviolet-induced (6-4) photoproduct by photolyase.
Jiang Li, Zheyun Liu, Chuang Tan, Xunmin Guo, Lijuan Wang, Aziz Sancar, Dongping Zhong. Nature 2010
138
17

Dynamics and mechanism of cyclobutane pyrimidine dimer repair by DNA photolyase.
Zheyun Liu, Chuang Tan, Xunmin Guo, Ya-Ting Kao, Jiang Li, Lijuan Wang, Aziz Sancar, Dongping Zhong. Proc Natl Acad Sci U S A 2011
111
17

Dealing with light: the widespread and multitasking cryptochrome/photolyase family in photosynthetic organisms.
Antonio Emidio Fortunato, Rossella Annunziata, Marianne Jaubert, Jean-Pierre Bouly, Angela Falciatore. J Plant Physiol 2015
62
27

The class III cyclobutane pyrimidine dimer photolyase structure reveals a new antenna chromophore binding site and alternative photoreduction pathways.
Patrick Scheerer, Fan Zhang, Jacqueline Kalms, David von Stetten, Norbert Krauß, Inga Oberpichler, Tilman Lamparter. J Biol Chem 2015
38
44

Fungal cryptochrome with DNA repair activity reveals an early stage in cryptochrome evolution.
Victor G Tagua, Marcell Pausch, Maike Eckel, Gabriel Gutiérrez, Alejandro Miralles-Durán, Catalina Sanz, Arturo P Eslava, Richard Pokorny, Luis M Corrochano, Alfred Batschauer. Proc Natl Acad Sci U S A 2015
53
32

Searching for a photocycle of the cryptochrome photoreceptors.
Bin Liu, Hongtao Liu, Dongping Zhong, Chentao Lin. Curr Opin Plant Biol 2010
113
16

More than a repair enzyme: Aspergillus nidulans photolyase-like CryA is a regulator of sexual development.
Ozgür Bayram, Christoph Biesemann, Sven Krappmann, Paul Galland, Gerhard H Braus. Mol Biol Cell 2008
93
17

A flavin binding cryptochrome photoreceptor responds to both blue and red light in Chlamydomonas reinhardtii.
Benedikt Beel, Katja Prager, Meike Spexard, Severin Sasso, Daniel Weiss, Nico Müller, Mark Heinnickel, David Dewez, Danielle Ikoma, Arthur R Grossman,[...]. Plant Cell 2012
98
16


Regulation of flowering time by Arabidopsis photoreceptors.
H Guo, H Yang, T C Mockler, C Lin. Science 1998
502
15

A photolyase-like protein from Agrobacterium tumefaciens with an iron-sulfur cluster.
Inga Oberpichler, Antonio J Pierik, Janine Wesslowski, Richard Pokorny, Ran Rosen, Michal Vugman, Fan Zhang, Olivia Neubauer, Eliora Z Ron, Alfred Batschauer,[...]. PLoS One 2011
45
33

Kinetics of cyclobutane thymine dimer splitting by DNA photolyase directly monitored in the UV.
Viruthachalam Thiagarajan, Martin Byrdin, André P M Eker, Pavel Müller, Klaus Brettel. Proc Natl Acad Sci U S A 2011
53
28

Ultrafast dynamics and anionic active states of the flavin cofactor in cryptochrome and photolyase.
Ya-Ting Kao, Chuang Tan, Sang-Hun Song, Nuri Oztürk, Jiang Li, Lijuan Wang, Aziz Sancar, Dongping Zhong. J Am Chem Soc 2008
101
14

Purification and characterization of a type III photolyase from Caulobacter crescentus.
Nuri Oztürk, Ya-Ting Kao, Christopher P Selby, I Halil Kavakli, Carrie L Partch, Dongping Zhong, Aziz Sancar. Biochemistry 2008
39
35

The action mechanisms of plant cryptochromes.
Hongtao Liu, Bin Liu, Chenxi Zhao, Michael Pepper, Chentao Lin. Trends Plant Sci 2011
187
14



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.