A citation-based method for searching scientific literature

Kenneth A Johnson, Zachary B Simpson, Thomas Blom. Anal Biochem 2009
Times Cited: 359







List of co-cited articles
405 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity





A new paradigm for DNA polymerase specificity.
Yu-Chih Tsai, Kenneth A Johnson. Biochemistry 2006
192
9



Distinguishing induced fit from conformational selection.
Stefano Gianni, Jakob Dogan, Per Jemth. Biophys Chem 2014
104
7

Phaser crystallographic software.
Airlie J McCoy, Ralf W Grosse-Kunstleve, Paul D Adams, Martyn D Winn, Laurent C Storoni, Randy J Read. J Appl Crystallogr 2007
7

Features and development of Coot.
P Emsley, B Lohkamp, W G Scott, K Cowtan. Acta Crystallogr D Biol Crystallogr 2010
7







Crystal structure of a bacteriophage T7 DNA replication complex at 2.2 A resolution.
S Doublié, S Tabor, A M Long, C C Richardson, T Ellenberger. Nature 1998
5

ff14SB: Improving the Accuracy of Protein Side Chain and Backbone Parameters from ff99SB.
James A Maier, Carmenza Martinez, Koushik Kasavajhala, Lauren Wickstrom, Kevin E Hauser, Carlos Simmerling. J Chem Theory Comput 2015
5

Remdesivir is a direct-acting antiviral that inhibits RNA-dependent RNA polymerase from severe acute respiratory syndrome coronavirus 2 with high potency.
Calvin J Gordon, Egor P Tchesnokov, Emma Woolner, Jason K Perry, Joy Y Feng, Danielle P Porter, Matthias Götte. J Biol Chem 2020
422
5

Structural and molecular basis of mismatch correction and ribavirin excision from coronavirus RNA.
François Ferron, Lorenzo Subissi, Ana Theresa Silveira De Morais, Nhung Thi Tuyet Le, Marion Sevajol, Laure Gluais, Etienne Decroly, Clemens Vonrhein, Gérard Bricogne, Bruno Canard,[...]. Proc Natl Acad Sci U S A 2018
195
5

Rate-limiting Pyrophosphate Release by HIV Reverse Transcriptase Improves Fidelity.
An Li, Shanzhong Gong, Kenneth A Johnson. J Biol Chem 2016
17
29

A reexamination of the nucleotide incorporation fidelity of DNA polymerases.
Alexander K Showalter, Ming-Daw Tsai. Biochemistry 2002
118
4

How conformational dynamics of DNA polymerase select correct substrates: experiments and simulations.
Serdal Kirmizialtin, Virginia Nguyen, Kenneth A Johnson, Ron Elber. Structure 2012
84
4

Fundamental aspects of protein-protein association kinetics.
G Schreiber, G Haran, H-X Zhou. Chem Rev 2009
482
4



Conformational selection or induced fit: a flux description of reaction mechanism.
Gordon G Hammes, Yu-Chu Chang, Terrence G Oas. Proc Natl Acad Sci U S A 2009
364
4

Coot: model-building tools for molecular graphics.
Paul Emsley, Kevin Cowtan. Acta Crystallogr D Biol Crystallogr 2004
4

XDS.
Wolfgang Kabsch. Acta Crystallogr D Biol Crystallogr 2010
4

PHENIX: a comprehensive Python-based system for macromolecular structure solution.
Paul D Adams, Pavel V Afonine, Gábor Bunkóczi, Vincent B Chen, Ian W Davis, Nathaniel Echols, Jeffrey J Headd, Li-Wei Hung, Gary J Kapral, Ralf W Grosse-Kunstleve,[...]. Acta Crystallogr D Biol Crystallogr 2010
4

[20] Processing of X-ray diffraction data collected in oscillation mode.
Zbyszek Otwinowski, Wladek Minor. Methods Enzymol 1997
4

How good are my data and what is the resolution?
Philip R Evans, Garib N Murshudov. Acta Crystallogr D Biol Crystallogr 2013
4


Conformational selection dominates binding of steroids to human cytochrome P450 17A1.
F Peter Guengerich, Clayton J Wilkey, Sarah M Glass, Michael J Reddish. J Biol Chem 2019
20
20


A structurally heterogeneous transition state underlies coupled binding and folding of disordered proteins.
Elin Karlsson, Eva Andersson, Jakob Dogan, Stefano Gianni, Per Jemth, Carlo Camilloni. J Biol Chem 2019
27
14


Assembly, purification, and pre-steady-state kinetic analysis of active RNA-dependent RNA polymerase elongation complex.
Zhinan Jin, Vincent Leveque, Han Ma, Kenneth A Johnson, Klaus Klumpp. J Biol Chem 2012
41
9

The antiviral compound remdesivir potently inhibits RNA-dependent RNA polymerase from Middle East respiratory syndrome coronavirus.
Calvin J Gordon, Egor P Tchesnokov, Joy Y Feng, Danielle P Porter, Matthias Götte. J Biol Chem 2020
408
4



Structure and function of the mycobacterial transcription initiation complex with the essential regulator RbpA.
Elizabeth A Hubin, Allison Fay, Catherine Xu, James M Bean, Ruth M Saecker, Michael S Glickman, Seth A Darst, Elizabeth A Campbell. Elife 2017
73
4

Enzyme Selectivity of HIV Reverse Transcriptase: Conformations, Ligands, and Free Energy Partition.
Serdal Kirmizialtin, Kenneth A Johnson, Ron Elber. J Phys Chem B 2015
23
13

The original Michaelis constant: translation of the 1913 Michaelis-Menten paper.
Leonor Michaelis, Maud Leonora Menten, Kenneth A Johnson, Roger S Goody. Biochemistry 2011
464
3


ON THE NATURE OF ALLOSTERIC TRANSITIONS: A PLAUSIBLE MODEL.
J MONOD, J WYMAN, J P CHANGEUX. J Mol Biol 1965
3

Enabling high-throughput ligation-independent cloning and protein expression for the family of ubiquitin specific proteases.
Mark P A Luna-Vargas, Evangelos Christodoulou, Andrea Alfieri, Willem J van Dijk, Magda Stadnik, Richard G Hibbert, Danny D Sahtoe, Marcello Clerici, Valeria De Marco, Dene Littler,[...]. J Struct Biol 2011
63
4

Mechanisms of Deubiquitinase Specificity and Regulation.
Tycho E T Mevissen, David Komander. Annu Rev Biochem 2017
406
3

The drug-target residence time model: a 10-year retrospective.
Robert A Copeland. Nat Rev Drug Discov 2016
329
3

Mechanism of inorganic phosphate interaction with phosphate binding protein from Escherichia coli.
M Brune, J L Hunter, S A Howell, S R Martin, T L Hazlett, J E Corrie, M R Webb. Biochemistry 1998
162
3



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.