Kenneth A Johnson, Zachary B Simpson, Thomas Blom. Anal Biochem 2009
Times Cited: 359
Times Cited: 359
Times Cited
Times Co-cited
Similarity
FitSpace explorer: an algorithm to evaluate multidimensional parameter space in fitting kinetic data.
Kenneth A Johnson, Zachary B Simpson, Thomas Blom. Anal Biochem 2009
Kenneth A Johnson, Zachary B Simpson, Thomas Blom. Anal Biochem 2009
51
Fitting enzyme kinetic data with KinTek Global Kinetic Explorer.
Kenneth A Johnson. Methods Enzymol 2009
Kenneth A Johnson. Methods Enzymol 2009
22
Nucleotide-dependent conformational change governs specificity and analog discrimination by HIV reverse transcriptase.
Matthew W Kellinger, Kenneth A Johnson. Proc Natl Acad Sci U S A 2010
Matthew W Kellinger, Kenneth A Johnson. Proc Natl Acad Sci U S A 2010
15
9
Kinetic partitioning between the exonuclease and polymerase sites in DNA error correction.
M J Donlin, S S Patel, K A Johnson. Biochemistry 1991
M J Donlin, S S Patel, K A Johnson. Biochemistry 1991
9
Pre-steady-state kinetic analysis of processive DNA replication including complete characterization of an exonuclease-deficient mutant.
S S Patel, I Wong, K A Johnson. Biochemistry 1991
S S Patel, I Wong, K A Johnson. Biochemistry 1991
8
Distinguishing induced fit from conformational selection.
Stefano Gianni, Jakob Dogan, Per Jemth. Biophys Chem 2014
Stefano Gianni, Jakob Dogan, Per Jemth. Biophys Chem 2014
7
Phaser crystallographic software.
Airlie J McCoy, Ralf W Grosse-Kunstleve, Paul D Adams, Martyn D Winn, Laurent C Storoni, Randy J Read. J Appl Crystallogr 2007
Airlie J McCoy, Ralf W Grosse-Kunstleve, Paul D Adams, Martyn D Winn, Laurent C Storoni, Randy J Read. J Appl Crystallogr 2007
7
Features and development of Coot.
P Emsley, B Lohkamp, W G Scott, K Cowtan. Acta Crystallogr D Biol Crystallogr 2010
P Emsley, B Lohkamp, W G Scott, K Cowtan. Acta Crystallogr D Biol Crystallogr 2010
7
An induced-fit kinetic mechanism for DNA replication fidelity: direct measurement by single-turnover kinetics.
I Wong, S S Patel, K A Johnson. Biochemistry 1991
I Wong, S S Patel, K A Johnson. Biochemistry 1991
6
Role of induced fit in limiting discrimination against AZT by HIV reverse transcriptase.
Matthew W Kellinger, Kenneth A Johnson. Biochemistry 2011
Matthew W Kellinger, Kenneth A Johnson. Biochemistry 2011
16
Kinetic processivity of the two-step oxidations of progesterone and pregnenolone to androgens by human cytochrome P450 17A1.
Eric Gonzalez, F Peter Guengerich. J Biol Chem 2017
Eric Gonzalez, F Peter Guengerich. J Biol Chem 2017
19
Conformational selection or induced fit? A critical appraisal of the kinetic mechanism.
Austin D Vogt, Enrico Di Cera. Biochemistry 2012
Austin D Vogt, Enrico Di Cera. Biochemistry 2012
5
Crystal structure of a bacteriophage T7 DNA replication complex at 2.2 A resolution.
S Doublié, S Tabor, A M Long, C C Richardson, T Ellenberger. Nature 1998
S Doublié, S Tabor, A M Long, C C Richardson, T Ellenberger. Nature 1998
5
ff14SB: Improving the Accuracy of Protein Side Chain and Backbone Parameters from ff99SB.
James A Maier, Carmenza Martinez, Koushik Kasavajhala, Lauren Wickstrom, Kevin E Hauser, Carlos Simmerling. J Chem Theory Comput 2015
James A Maier, Carmenza Martinez, Koushik Kasavajhala, Lauren Wickstrom, Kevin E Hauser, Carlos Simmerling. J Chem Theory Comput 2015
5
Remdesivir is a direct-acting antiviral that inhibits RNA-dependent RNA polymerase from severe acute respiratory syndrome coronavirus 2 with high potency.
Calvin J Gordon, Egor P Tchesnokov, Emma Woolner, Jason K Perry, Joy Y Feng, Danielle P Porter, Matthias Götte. J Biol Chem 2020
Calvin J Gordon, Egor P Tchesnokov, Emma Woolner, Jason K Perry, Joy Y Feng, Danielle P Porter, Matthias Götte. J Biol Chem 2020
5
Structural and molecular basis of mismatch correction and ribavirin excision from coronavirus RNA.
François Ferron, Lorenzo Subissi, Ana Theresa Silveira De Morais, Nhung Thi Tuyet Le, Marion Sevajol, Laure Gluais, Etienne Decroly, Clemens Vonrhein, Gérard Bricogne, Bruno Canard,[...]. Proc Natl Acad Sci U S A 2018
François Ferron, Lorenzo Subissi, Ana Theresa Silveira De Morais, Nhung Thi Tuyet Le, Marion Sevajol, Laure Gluais, Etienne Decroly, Clemens Vonrhein, Gérard Bricogne, Bruno Canard,[...]. Proc Natl Acad Sci U S A 2018
5
Rate-limiting Pyrophosphate Release by HIV Reverse Transcriptase Improves Fidelity.
An Li, Shanzhong Gong, Kenneth A Johnson. J Biol Chem 2016
An Li, Shanzhong Gong, Kenneth A Johnson. J Biol Chem 2016
29
A reexamination of the nucleotide incorporation fidelity of DNA polymerases.
Alexander K Showalter, Ming-Daw Tsai. Biochemistry 2002
Alexander K Showalter, Ming-Daw Tsai. Biochemistry 2002
4
How conformational dynamics of DNA polymerase select correct substrates: experiments and simulations.
Serdal Kirmizialtin, Virginia Nguyen, Kenneth A Johnson, Ron Elber. Structure 2012
Serdal Kirmizialtin, Virginia Nguyen, Kenneth A Johnson, Ron Elber. Structure 2012
4
Fundamental aspects of protein-protein association kinetics.
G Schreiber, G Haran, H-X Zhou. Chem Rev 2009
G Schreiber, G Haran, H-X Zhou. Chem Rev 2009
4
Survey of Human Oxidoreductases and Cytochrome P450 Enzymes Involved in the Metabolism of Xenobiotic and Natural Chemicals.
Slobodan Rendic, F Peter Guengerich. Chem Res Toxicol 2015
Slobodan Rendic, F Peter Guengerich. Chem Res Toxicol 2015
4
Conformational selection or induced fit: a flux description of reaction mechanism.
Gordon G Hammes, Yu-Chu Chang, Terrence G Oas. Proc Natl Acad Sci U S A 2009
Gordon G Hammes, Yu-Chu Chang, Terrence G Oas. Proc Natl Acad Sci U S A 2009
4
Coot: model-building tools for molecular graphics.
Paul Emsley, Kevin Cowtan. Acta Crystallogr D Biol Crystallogr 2004
Paul Emsley, Kevin Cowtan. Acta Crystallogr D Biol Crystallogr 2004
4
PHENIX: a comprehensive Python-based system for macromolecular structure solution.
Paul D Adams, Pavel V Afonine, Gábor Bunkóczi, Vincent B Chen, Ian W Davis, Nathaniel Echols, Jeffrey J Headd, Li-Wei Hung, Gary J Kapral, Ralf W Grosse-Kunstleve,[...]. Acta Crystallogr D Biol Crystallogr 2010
Paul D Adams, Pavel V Afonine, Gábor Bunkóczi, Vincent B Chen, Ian W Davis, Nathaniel Echols, Jeffrey J Headd, Li-Wei Hung, Gary J Kapral, Ralf W Grosse-Kunstleve,[...]. Acta Crystallogr D Biol Crystallogr 2010
4
[20] Processing of X-ray diffraction data collected in oscillation mode.
Zbyszek Otwinowski, Wladek Minor. Methods Enzymol 1997
Zbyszek Otwinowski, Wladek Minor. Methods Enzymol 1997
4
How good are my data and what is the resolution?
Philip R Evans, Garib N Murshudov. Acta Crystallogr D Biol Crystallogr 2013
Philip R Evans, Garib N Murshudov. Acta Crystallogr D Biol Crystallogr 2013
4
Mechanism and kinetics of dark iron redox transformations in previously photolyzed acidic natural organic matter solutions.
Shikha Garg, Hiroaki Ito, Andrew L Rose, T David Waite. Environ Sci Technol 2013
Shikha Garg, Hiroaki Ito, Andrew L Rose, T David Waite. Environ Sci Technol 2013
13
Conformational selection dominates binding of steroids to human cytochrome P450 17A1.
F Peter Guengerich, Clayton J Wilkey, Sarah M Glass, Michael J Reddish. J Biol Chem 2019
F Peter Guengerich, Clayton J Wilkey, Sarah M Glass, Michael J Reddish. J Biol Chem 2019
20
New standards for collecting and fitting steady state kinetic data.
Kenneth A Johnson. Beilstein J Org Chem 2019
Kenneth A Johnson. Beilstein J Org Chem 2019
14
A structurally heterogeneous transition state underlies coupled binding and folding of disordered proteins.
Elin Karlsson, Eva Andersson, Jakob Dogan, Stefano Gianni, Per Jemth, Carlo Camilloni. J Biol Chem 2019
Elin Karlsson, Eva Andersson, Jakob Dogan, Stefano Gianni, Per Jemth, Carlo Camilloni. J Biol Chem 2019
14
Native Hydrophobic Binding Interactions at the Transition State for Association between the TAZ1 Domain of CBP and the Disordered TAD-STAT2 Are Not a Requirement.
Ida Lindström, Jakob Dogan. Biochemistry 2017
Ida Lindström, Jakob Dogan. Biochemistry 2017
19
Assembly, purification, and pre-steady-state kinetic analysis of active RNA-dependent RNA polymerase elongation complex.
Zhinan Jin, Vincent Leveque, Han Ma, Kenneth A Johnson, Klaus Klumpp. J Biol Chem 2012
Zhinan Jin, Vincent Leveque, Han Ma, Kenneth A Johnson, Klaus Klumpp. J Biol Chem 2012
9
The antiviral compound remdesivir potently inhibits RNA-dependent RNA polymerase from Middle East respiratory syndrome coronavirus.
Calvin J Gordon, Egor P Tchesnokov, Joy Y Feng, Danielle P Porter, Matthias Götte. J Biol Chem 2020
Calvin J Gordon, Egor P Tchesnokov, Joy Y Feng, Danielle P Porter, Matthias Götte. J Biol Chem 2020
4
Optimized incorporation of an unnatural fluorescent amino acid affords measurement of conformational dynamics governing high-fidelity DNA replication.
Tyler L Dangerfield, Kenneth A Johnson. J Biol Chem 2020
Tyler L Dangerfield, Kenneth A Johnson. J Biol Chem 2020
66
Conformational dynamics during high-fidelity DNA replication and translocation defined using a DNA polymerase with a fluorescent artificial amino acid.
Tyler L Dangerfield, Kenneth A Johnson. J Biol Chem 2021
Tyler L Dangerfield, Kenneth A Johnson. J Biol Chem 2021
80
Structure and function of the mycobacterial transcription initiation complex with the essential regulator RbpA.
Elizabeth A Hubin, Allison Fay, Catherine Xu, James M Bean, Ruth M Saecker, Michael S Glickman, Seth A Darst, Elizabeth A Campbell. Elife 2017
Elizabeth A Hubin, Allison Fay, Catherine Xu, James M Bean, Ruth M Saecker, Michael S Glickman, Seth A Darst, Elizabeth A Campbell. Elife 2017
4
Enzyme Selectivity of HIV Reverse Transcriptase: Conformations, Ligands, and Free Energy Partition.
Serdal Kirmizialtin, Kenneth A Johnson, Ron Elber. J Phys Chem B 2015
Serdal Kirmizialtin, Kenneth A Johnson, Ron Elber. J Phys Chem B 2015
13
The original Michaelis constant: translation of the 1913 Michaelis-Menten paper.
Leonor Michaelis, Maud Leonora Menten, Kenneth A Johnson, Roger S Goody. Biochemistry 2011
Leonor Michaelis, Maud Leonora Menten, Kenneth A Johnson, Roger S Goody. Biochemistry 2011
3
Rapid quench kinetic analysis of polymerases, adenosinetriphosphatases, and enzyme intermediates.
K A Johnson. Methods Enzymol 1995
K A Johnson. Methods Enzymol 1995
3
ON THE NATURE OF ALLOSTERIC TRANSITIONS: A PLAUSIBLE MODEL.
J MONOD, J WYMAN, J P CHANGEUX. J Mol Biol 1965
J MONOD, J WYMAN, J P CHANGEUX. J Mol Biol 1965
3
Enabling high-throughput ligation-independent cloning and protein expression for the family of ubiquitin specific proteases.
Mark P A Luna-Vargas, Evangelos Christodoulou, Andrea Alfieri, Willem J van Dijk, Magda Stadnik, Richard G Hibbert, Danny D Sahtoe, Marcello Clerici, Valeria De Marco, Dene Littler,[...]. J Struct Biol 2011
Mark P A Luna-Vargas, Evangelos Christodoulou, Andrea Alfieri, Willem J van Dijk, Magda Stadnik, Richard G Hibbert, Danny D Sahtoe, Marcello Clerici, Valeria De Marco, Dene Littler,[...]. J Struct Biol 2011
4
Mechanisms of Deubiquitinase Specificity and Regulation.
Tycho E T Mevissen, David Komander. Annu Rev Biochem 2017
Tycho E T Mevissen, David Komander. Annu Rev Biochem 2017
3
The drug-target residence time model: a 10-year retrospective.
Robert A Copeland. Nat Rev Drug Discov 2016
Robert A Copeland. Nat Rev Drug Discov 2016
3
Mechanism of inorganic phosphate interaction with phosphate binding protein from Escherichia coli.
M Brune, J L Hunter, S A Howell, S R Martin, T L Hazlett, J E Corrie, M R Webb. Biochemistry 1998
M Brune, J L Hunter, S A Howell, S R Martin, T L Hazlett, J E Corrie, M R Webb. Biochemistry 1998
3
Role of induced fit in enzyme specificity: a molecular forward/reverse switch.
Kenneth A Johnson. J Biol Chem 2008
Kenneth A Johnson. J Biol Chem 2008
3
Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.