A citation-based method for searching scientific literature

Bo Eskerod Madsen, Sharon R Browning. PLoS Genet 2009
Times Cited: 774







List of co-cited articles
624 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Rare-variant association testing for sequencing data with the sequence kernel association test.
Michael C Wu, Seunggeun Lee, Tianxi Cai, Yun Li, Michael Boehnke, Xihong Lin. Am J Hum Genet 2011
70


Rare-variant association analysis: study designs and statistical tests.
Seunggeung Lee, Gonçalo R Abecasis, Michael Boehnke, Xihong Lin. Am J Hum Genet 2014
535
33

Pooled association tests for rare variants in exon-resequencing studies.
Alkes L Price, Gregory V Kryukov, Paul I W de Bakker, Shaun M Purcell, Jeff Staples, Lee-Jen Wei, Shamil R Sunyaev. Am J Hum Genet 2010
568
29


Optimal tests for rare variant effects in sequencing association studies.
Seunggeun Lee, Michael C Wu, Xihong Lin. Biostatistics 2012
409
27

Optimal unified approach for rare-variant association testing with application to small-sample case-control whole-exome sequencing studies.
Seunggeun Lee, Mary J Emond, Michael J Bamshad, Kathleen C Barnes, Mark J Rieder, Deborah A Nickerson, David C Christiani, Mark M Wurfel, Xihong Lin. Am J Hum Genet 2012
561
25

Finding the missing heritability of complex diseases.
Teri A Manolio, Francis S Collins, Nancy J Cox, David B Goldstein, Lucia A Hindorff, David J Hunter, Mark I McCarthy, Erin M Ramos, Lon R Cardon, Aravinda Chakravarti,[...]. Nature 2009
20


Testing for an unusual distribution of rare variants.
Benjamin M Neale, Manuel A Rivas, Benjamin F Voight, David Altshuler, Bernie Devlin, Marju Orho-Melander, Sekar Kathiresan, Shaun M Purcell, Kathryn Roeder, Mark J Daly. PLoS Genet 2011
424
17

PLINK: a tool set for whole-genome association and population-based linkage analyses.
Shaun Purcell, Benjamin Neale, Kathe Todd-Brown, Lori Thomas, Manuel A R Ferreira, David Bender, Julian Maller, Pamela Sklar, Paul I W de Bakker, Mark J Daly,[...]. Am J Hum Genet 2007
14

ACAT: A Fast and Powerful p Value Combination Method for Rare-Variant Analysis in Sequencing Studies.
Yaowu Liu, Sixing Chen, Zilin Li, Alanna C Morrison, Eric Boerwinkle, Xihong Lin. Am J Hum Genet 2019
62
22

A global reference for human genetic variation.
Adam Auton, Lisa D Brooks, Richard M Durbin, Erik P Garrison, Hyun Min Kang, Jan O Korbel, Jonathan L Marchini, Shane McCarthy, Gil A McVean, Gonçalo R Abecasis. Nature 2015
13

Sequence kernel association test for quantitative traits in family samples.
Han Chen, James B Meigs, Josée Dupuis. Genet Epidemiol 2013
157
12


Powerful SNP-set analysis for case-control genome-wide association studies.
Michael C Wu, Peter Kraft, Michael P Epstein, Deanne M Taylor, Stephen J Chanock, David J Hunter, Xihong Lin. Am J Hum Genet 2010
389
12


Control for Population Structure and Relatedness for Binary Traits in Genetic Association Studies via Logistic Mixed Models.
Han Chen, Chaolong Wang, Matthew P Conomos, Adrienne M Stilp, Zilin Li, Tamar Sofer, Adam A Szpiro, Wei Chen, John M Brehm, Juan C Celedón,[...]. Am J Hum Genet 2016
179
11

Calibrating a coalescent simulation of human genome sequence variation.
Stephen F Schaffner, Catherine Foo, Stacey Gabriel, David Reich, Mark J Daly, David Altshuler. Genome Res 2005
472
11

Rare and common variants: twenty arguments.
Greg Gibson. Nat Rev Genet 2012
703
10

Analysis of protein-coding genetic variation in 60,706 humans.
Monkol Lek, Konrad J Karczewski, Eric V Minikel, Kaitlin E Samocha, Eric Banks, Timothy Fennell, Anne H O'Donnell-Luria, James S Ware, Andrew J Hill, Beryl B Cummings,[...]. Nature 2016
10

Sequence kernel association tests for the combined effect of rare and common variants.
Iuliana Ionita-Laza, Seunggeun Lee, Vlad Makarov, Joseph D Buxbaum, Xihong Lin. Am J Hum Genet 2013
279
10

A powerful and adaptive association test for rare variants.
Wei Pan, Junghi Kim, Yiwei Zhang, Xiaotong Shen, Peng Wei. Genetics 2014
112
10

Statistical analysis strategies for association studies involving rare variants.
Vikas Bansal, Ondrej Libiger, Ali Torkamani, Nicholas J Schork. Nat Rev Genet 2010
324
9

A method and server for predicting damaging missense mutations.
Ivan A Adzhubei, Steffen Schmidt, Leonid Peshkin, Vasily E Ramensky, Anna Gerasimova, Peer Bork, Alexey S Kondrashov, Shamil R Sunyaev. Nat Methods 2010
9

CADD: predicting the deleteriousness of variants throughout the human genome.
Philipp Rentzsch, Daniela Witten, Gregory M Cooper, Jay Shendure, Martin Kircher. Nucleic Acids Res 2019
9

A general framework for estimating the relative pathogenicity of human genetic variants.
Martin Kircher, Daniela M Witten, Preti Jain, Brian J O'Roak, Gregory M Cooper, Jay Shendure. Nat Genet 2014
9

The Ensembl Variant Effect Predictor.
William McLaren, Laurent Gil, Sarah E Hunt, Harpreet Singh Riat, Graham R S Ritchie, Anja Thormann, Paul Flicek, Fiona Cunningham. Genome Biol 2016
9

Variance component model to account for sample structure in genome-wide association studies.
Hyun Min Kang, Jae Hoon Sul, Susan K Service, Noah A Zaitlen, Sit-Yee Kong, Nelson B Freimer, Chiara Sabatti, Eleazar Eskin. Nat Genet 2010
8

The power of gene-based rare variant methods to detect disease-associated variation and test hypotheses about complex disease.
Loukas Moutsianas, Vineeta Agarwala, Christian Fuchsberger, Jason Flannick, Manuel A Rivas, Kyle J Gaulton, Patrick K Albers, Gil McVean, Michael Boehnke, David Altshuler,[...]. PLoS Genet 2015
85
9

Integrative approaches for large-scale transcriptome-wide association studies.
Alexander Gusev, Arthur Ko, Huwenbo Shi, Gaurav Bhatia, Wonil Chung, Brenda W J H Penninx, Rick Jansen, Eco J C de Geus, Dorret I Boomsma, Fred A Wright,[...]. Nat Genet 2016
708
8

Common vs. rare allele hypotheses for complex diseases.
Nicholas J Schork, Sarah S Murray, Kelly A Frazer, Eric J Topol. Curr Opin Genet Dev 2009
423
8

Efficient Variant Set Mixed Model Association Tests for Continuous and Binary Traits in Large-Scale Whole-Genome Sequencing Studies.
Han Chen, Jennifer E Huffman, Jennifer A Brody, Chaolong Wang, Seunggeun Lee, Zilin Li, Stephanie M Gogarten, Tamar Sofer, Lawrence F Bielak, Joshua C Bis,[...]. Am J Hum Genet 2019
40
20

Searching for missing heritability: designing rare variant association studies.
Or Zuk, Stephen F Schaffner, Kaitlin Samocha, Ron Do, Eliana Hechter, Sekar Kathiresan, Mark J Daly, Benjamin M Neale, Shamil R Sunyaev, Eric S Lander. Proc Natl Acad Sci U S A 2014
369
8


FaST linear mixed models for genome-wide association studies.
Christoph Lippert, Jennifer Listgarten, Ying Liu, Carl M Kadie, Robert I Davidson, David Heckerman. Nat Methods 2011
584
7



The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data.
Aaron McKenna, Matthew Hanna, Eric Banks, Andrey Sivachenko, Kristian Cibulskis, Andrew Kernytsky, Kiran Garimella, David Altshuler, Stacey Gabriel, Mark Daly,[...]. Genome Res 2010
7

A gene-based association method for mapping traits using reference transcriptome data.
Eric R Gamazon, Heather E Wheeler, Kaanan P Shah, Sahar V Mozaffari, Keston Aquino-Michaels, Robert J Carroll, Anne E Eyler, Joshua C Denny, Dan L Nicolae, Nancy J Cox,[...]. Nat Genet 2015
705
7

Missing heritability and strategies for finding the underlying causes of complex disease.
Evan E Eichler, Jonathan Flint, Greg Gibson, Augustine Kong, Suzanne M Leal, Jason H Moore, Joseph H Nadeau. Nat Rev Genet 2010
7

10 Years of GWAS Discovery: Biology, Function, and Translation.
Peter M Visscher, Naomi R Wray, Qian Zhang, Pamela Sklar, Mark I McCarthy, Matthew A Brown, Jian Yang. Am J Hum Genet 2017
7

Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.
Wei Zhou, Jonas B Nielsen, Lars G Fritsche, Rounak Dey, Maiken E Gabrielsen, Brooke N Wolford, Jonathon LeFaive, Peter VandeHaar, Sarah A Gagliano, Aliya Gifford,[...]. Nat Genet 2018
298
7

A powerful and flexible multilocus association test for quantitative traits.
Lydia Coulter Kwee, Dawei Liu, Xihong Lin, Debashis Ghosh, Michael P Epstein. Am J Hum Genet 2008
168
6

The UK10K project identifies rare variants in health and disease.
Klaudia Walter, Josine L Min, Jie Huang, Lucy Crooks, Yasin Memari, Shane McCarthy, John R B Perry, ChangJiang Xu, Marta Futema, Daniel Lawson,[...]. Nature 2015
591
6

A unified mixed-effects model for rare-variant association in sequencing studies.
Jianping Sun, Yingye Zheng, Li Hsu. Genet Epidemiol 2013
77
7

Test for interactions between a genetic marker set and environment in generalized linear models.
Xinyi Lin, Seunggeun Lee, David C Christiani, Xihong Lin. Biostatistics 2013
68
8

Evolution and functional impact of rare coding variation from deep sequencing of human exomes.
Jacob A Tennessen, Abigail W Bigham, Timothy D O'Connor, Wenqing Fu, Eimear E Kenny, Simon Gravel, Sean McGee, Ron Do, Xiaoming Liu, Goo Jun,[...]. Science 2012
6

Powerful Genetic Association Analysis for Common or Rare Variants with High-Dimensional Structured Traits.
Xiang Zhan, Ni Zhao, Anna Plantinga, Timothy A Thornton, Karen N Conneely, Michael P Epstein, Michael C Wu. Genetics 2017
21
28



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.