A citation-based method for searching scientific literature

J M Ruijter, C Ramakers, W M H Hoogaars, Y Karlen, O Bakker, M J B van den Hoff, A F M Moorman. Nucleic Acids Res 2009
Times Cited: 1761







List of co-cited articles
145 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes.
Jo Vandesompele, Katleen De Preter, Filip Pattyn, Bruce Poppe, Nadine Van Roy, Anne De Paepe, Frank Speleman. Genome Biol 2002
18

Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR) data.
Christian Ramakers, Jan M Ruijter, Ronald H Lekanne Deprez, Antoon F M Moorman. Neurosci Lett 2003
13

The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments.
Stephen A Bustin, Vladimir Benes, Jeremy A Garson, Jan Hellemans, Jim Huggett, Mikael Kubista, Reinhold Mueller, Tania Nolan, Michael W Pfaffl, Gregory L Shipley,[...]. Clin Chem 2009
12





Reference genes in real-time PCR.
Bartłomiej Kozera, Marcin Rapacz. J Appl Genet 2013
401
6

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
5

Trimmomatic: a flexible trimmer for Illumina sequence data.
Anthony M Bolger, Marc Lohse, Bjoern Usadel. Bioinformatics 2014
5

miRDeepFinder: a miRNA analysis tool for deep sequencing of plant small RNAs.
Fuliang Xie, Peng Xiao, Dongliang Chen, Lei Xu, Baohong Zhang. Plant Mol Biol 2012
518
5


Factor correction as a tool to eliminate between-session variation in replicate experiments: application to molecular biology and retrovirology.
Jan M Ruijter, Helene H Thygesen, Onard J L M Schoneveld, Atze T Das, Ben Berkhout, Wouter H Lamers. Retrovirology 2006
134
4



Simple absolute quantification method correcting for quantitative PCR efficiency variations for microbial community samples.
Robert Brankatschk, Natacha Bodenhausen, Josef Zeyer, Helmut Bürgmann. Appl Environ Microbiol 2012
92
4

Reference gene validation for RT-qPCR, a note on different available software packages.
Ward De Spiegelaere, Jutta Dern-Wieloch, Roswitha Weigel, Valérie Schumacher, Hubert Schorle, Daniel Nettersheim, Martin Bergmann, Ralph Brehm, Sabine Kliesch, Linos Vandekerckhove,[...]. PLoS One 2015
110
4

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.
Sudhir Kumar, Glen Stecher, Koichiro Tamura. Mol Biol Evol 2016
4

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms.
Sudhir Kumar, Glen Stecher, Michael Li, Christina Knyaz, Koichiro Tamura. Mol Biol Evol 2018
4

Primer-BLAST: a tool to design target-specific primers for polymerase chain reaction.
Jian Ye, George Coulouris, Irena Zaretskaya, Ioana Cutcutache, Steve Rozen, Thomas L Madden. BMC Bioinformatics 2012
3

The association between stressors and telomeres in non-human vertebrates: a meta-analysis.
Marion Chatelain, Szymon M Drobniak, Marta Szulkin. Ecol Lett 2020
32
9

The relationship between telomere length and mortality risk in non-model vertebrate systems: a meta-analysis.
Rachael V Wilbourn, Joshua P Moatt, Hannah Froy, Craig A Walling, Daniel H Nussey, Jelle J Boonekamp. Philos Trans R Soc Lond B Biol Sci 2018
78
3

The hallmarks of aging.
Carlos López-Otín, Maria A Blasco, Linda Partridge, Manuel Serrano, Guido Kroemer. Cell 2013
3

Reference genes for gene expression studies in the mouse heart.
Adrián Ruiz-Villalba, Andrea Mattiotti, Quinn D Gunst, Sara Cano-Ballesteros, Maurice J B van den Hoff, Jan M Ruijter. Sci Rep 2017
20
15

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
3

Somatic growth and telomere dynamics in vertebrates: relationships, mechanisms and consequences.
Pat Monaghan, Susan E Ozanne. Philos Trans R Soc Lond B Biol Sci 2018
61
4

qBase relative quantification framework and software for management and automated analysis of real-time quantitative PCR data.
Jan Hellemans, Geert Mortier, Anne De Paepe, Frank Speleman, Jo Vandesompele. Genome Biol 2007
3

Integrative genomics viewer.
James T Robinson, Helga Thorvaldsdóttir, Wendy Winckler, Mitchell Guttman, Eric S Lander, Gad Getz, Jill P Mesirov. Nat Biotechnol 2011
3

HISAT: a fast spliced aligner with low memory requirements.
Daehwan Kim, Ben Langmead, Steven L Salzberg. Nat Methods 2015
3

Exosome-mediated transfer of mRNAs and microRNAs is a novel mechanism of genetic exchange between cells.
Hadi Valadi, Karin Ekström, Apostolos Bossios, Margareta Sjöstrand, James J Lee, Jan O Lötvall. Nat Cell Biol 2007
3

Real-time RT-PCR normalisation; strategies and considerations.
J Huggett, K Dheda, S Bustin, A Zumla. Genes Immun 2005
3

Fiji: an open-source platform for biological-image analysis.
Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid,[...]. Nat Methods 2012
3

Primer3--new capabilities and interfaces.
Andreas Untergasser, Ioana Cutcutache, Triinu Koressaar, Jian Ye, Brant C Faircloth, Maido Remm, Steven G Rozen. Nucleic Acids Res 2012
3

Removal of between-run variation in a multi-plate qPCR experiment.
Jan M Ruijter, Adrián Ruiz Villalba, Jan Hellemans, Andreas Untergasser, Maurice J B van den Hoff. Biomol Detect Quantif 2015
48
6


The SILVA ribosomal RNA gene database project: improved data processing and web-based tools.
Christian Quast, Elmar Pruesse, Pelin Yilmaz, Jan Gerken, Timmy Schweer, Pablo Yarza, Jörg Peplies, Frank Oliver Glöckner. Nucleic Acids Res 2013
3

Analyzing real-time PCR data by the comparative C(T) method.
Thomas D Schmittgen, Kenneth J Livak. Nat Protoc 2008
3

Source and sink mechanisms of nitrogen transport and use.
Mechthild Tegeder, Céline Masclaux-Daubresse. New Phytol 2018
146
3



Lifelong leukocyte telomere dynamics and survival in a free-living mammal.
Jennifer Fairlie, Rebecca Holland, Jill G Pilkington, Josephine M Pemberton, Lea Harrington, Daniel H Nussey. Aging Cell 2016
60
3


Comparative biology of mammalian telomeres: hypotheses on ancestral states and the roles of telomeres in longevity determination.
Nuno M V Gomes, Oliver A Ryder, Marlys L Houck, Suellen J Charter, William Walker, Nicholas R Forsyth, Steven N Austad, Chris Venditti, Mark Pagel, Jerry W Shay,[...]. Aging Cell 2011
213
2

Oxidative stress shortens telomeres.
Thomas von Zglinicki. Trends Biochem Sci 2002
2

Early-life telomere length predicts lifespan and lifetime reproductive success in a wild bird.
Justin R Eastwood, Michelle L Hall, Niki Teunissen, Sjouke A Kingma, Nataly Hidalgo Aranzamendi, Marie Fan, Michael Roast, Simon Verhulst, Anne Peters. Mol Ecol 2019
28
7

Age-dependent associations between telomere length and environmental conditions in roe deer.
Rachael V Wilbourn, Hannah Froy, Marie-Christina McManus, Louise Cheynel, Jean-Michel Gaillard, Emmanuelle Gilot-Fromont, Corinne Regis, Benjamin Rey, Maryline Pellerin, Jean-François Lemaître,[...]. Biol Lett 2017
15
13

Telomere length is repeatable, shortens with age and reproductive success, and predicts remaining lifespan in a long-lived seabird.
Coraline Bichet, Sandra Bouwhuis, Christina Bauch, Simon Verhulst, Peter H Becker, Oscar Vedder. Mol Ecol 2020
12
16

Bovine telomere dynamics and the association between telomere length and productive lifespan.
Luise A Seeker, Joanna J Ilska, Androniki Psifidi, Rachael V Wilbourn, Sarah L Underwood, Jennifer Fairlie, Rebecca Holland, Hannah Froy, Eliane Salvo-Chirnside, Ainsley Bagnall,[...]. Sci Rep 2018
12
16

Telomere length in early life predicts lifespan.
Britt J Heidinger, Jonathan D Blount, Winnie Boner, Kate Griffiths, Neil B Metcalfe, Pat Monaghan. Proc Natl Acad Sci U S A 2012
361
2


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.