A citation-based method for searching scientific literature

Stephen A Bustin, Vladimir Benes, Jeremy A Garson, Jan Hellemans, Jim Huggett, Mikael Kubista, Reinhold Mueller, Tania Nolan, Michael W Pfaffl, Gregory L Shipley, Jo Vandesompele, Carl T Wittwer. Clin Chem 2009
Times Cited: 7442







List of co-cited articles
114 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes.
Jo Vandesompele, Katleen De Preter, Filip Pattyn, Bruce Poppe, Nadine Van Roy, Anne De Paepe, Frank Speleman. Genome Biol 2002
14



Amplification efficiency: linking baseline and bias in the analysis of quantitative PCR data.
J M Ruijter, C Ramakers, W M H Hoogaars, Y Karlen, O Bakker, M J B van den Hoff, A F M Moorman. Nucleic Acids Res 2009
6

Reference genes in real-time PCR.
Bartłomiej Kozera, Marcin Rapacz. J Appl Genet 2013
380
6


Analyzing real-time PCR data by the comparative C(T) method.
Thomas D Schmittgen, Kenneth J Livak. Nat Protoc 2008
5

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
5

miRDeepFinder: a miRNA analysis tool for deep sequencing of plant small RNAs.
Fuliang Xie, Peng Xiao, Dongliang Chen, Lei Xu, Baohong Zhang. Plant Mol Biol 2012
483
5

Primer3--new capabilities and interfaces.
Andreas Untergasser, Ioana Cutcutache, Triinu Koressaar, Jian Ye, Brant C Faircloth, Maido Remm, Steven G Rozen. Nucleic Acids Res 2012
4

Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR) data.
Christian Ramakers, Jan M Ruijter, Ronald H Lekanne Deprez, Antoon F M Moorman. Neurosci Lett 2003
4

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms.
Sudhir Kumar, Glen Stecher, Michael Li, Christina Knyaz, Koichiro Tamura. Mol Biol Evol 2018
4

Selection of housekeeping genes for gene expression studies in human reticulocytes using real-time PCR.
Nicholas Silver, Steve Best, Jie Jiang, Swee Lay Thein. BMC Mol Biol 2006
709
4

Reference gene validation for RT-qPCR, a note on different available software packages.
Ward De Spiegelaere, Jutta Dern-Wieloch, Roswitha Weigel, Valérie Schumacher, Hubert Schorle, Daniel Nettersheim, Martin Bergmann, Ralph Brehm, Sabine Kliesch, Linos Vandekerckhove,[...]. PLoS One 2015
103
4

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.
Mark D Robinson, Davis J McCarthy, Gordon K Smyth. Bioinformatics 2010
3

Human housekeeping genes, revisited.
Eli Eisenberg, Erez Y Levanon. Trends Genet 2013
541
3

Validation of housekeeping genes for normalizing RNA expression in real-time PCR.
Keertan Dheda, Jim F Huggett, Stephen A Bustin, Margaret A Johnson, Graham Rook, Alimuddin Zumla. Biotechniques 2004
616
3

A practical approach to RT-qPCR-Publishing data that conform to the MIQE guidelines.
Sean Taylor, Michael Wakem, Greg Dijkman, Marwan Alsarraj, Marie Nguyen. Methods 2010
336
3

Basic local alignment search tool.
S F Altschul, W Gish, W Miller, E W Myers, D J Lipman. J Mol Biol 1990
3

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists.
Da Wei Huang, Brad T Sherman, Richard A Lempicki. Nucleic Acids Res 2009
3

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources.
Da Wei Huang, Brad T Sherman, Richard A Lempicki. Nat Protoc 2009
3

SARS-CoV-2 Titers in Wastewater Are Higher than Expected from Clinically Confirmed Cases.
Fuqing Wu, Jianbo Zhang, Amy Xiao, Xiaoqiong Gu, Wei Lin Lee, Federica Armas, Kathryn Kauffman, William Hanage, Mariana Matus, Newsha Ghaeli,[...]. mSystems 2020
150
3

First confirmed detection of SARS-CoV-2 in untreated wastewater in Australia: A proof of concept for the wastewater surveillance of COVID-19 in the community.
Warish Ahmed, Nicola Angel, Janette Edson, Kyle Bibby, Aaron Bivins, Jake W O'Brien, Phil M Choi, Masaaki Kitajima, Stuart L Simpson, Jiaying Li,[...]. Sci Total Environ 2020
285
3

First proof of the capability of wastewater surveillance for COVID-19 in India through detection of genetic material of SARS-CoV-2.
Manish Kumar, Arbind Kumar Patel, Anil V Shah, Janvi Raval, Neha Rajpara, Madhvi Joshi, Chaitanya G Joshi. Sci Total Environ 2020
77
3

Temporal Detection and Phylogenetic Assessment of SARS-CoV-2 in Municipal Wastewater.
Artem Nemudryi, Anna Nemudraia, Tanner Wiegand, Kevin Surya, Murat Buyukyoruk, Calvin Cicha, Karl K Vanderwood, Royce Wilkinson, Blake Wiedenheft. Cell Rep Med 2020
91
3

First detection of SARS-CoV-2 RNA in wastewater in North America: A study in Louisiana, USA.
Samendra P Sherchan, Shalina Shahin, Lauren M Ward, Sarmila Tandukar, Tiong G Aw, Bradley Schmitz, Warish Ahmed, Masaaki Kitajima. Sci Total Environ 2020
62
4

Primer-BLAST: a tool to design target-specific primers for polymerase chain reaction.
Jian Ye, George Coulouris, Irena Zaretskaya, Ioana Cutcutache, Steve Rozen, Thomas L Madden. BMC Bioinformatics 2012
3

Housekeeping gene selection for real-time RT-PCR normalization in potato during biotic and abiotic stress.
Nathalie Nicot, Jean-François Hausman, Lucien Hoffmann, Danièle Evers. J Exp Bot 2005
621
3

How to do successful gene expression analysis using real-time PCR.
Stefaan Derveaux, Jo Vandesompele, Jan Hellemans. Methods 2010
351
3

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.
Ben Langmead, Cole Trapnell, Mihai Pop, Steven L Salzberg. Genome Biol 2009
3

Real-time RT-PCR normalisation; strategies and considerations.
J Huggett, K Dheda, S Bustin, A Zumla. Genes Immun 2005
3

Validation of housekeeping genes as internal control for studying gene expression in rice by quantitative real-time PCR.
Mukesh Jain, Aashima Nijhawan, Akhilesh K Tyagi, Jitendra P Khurana. Biochem Biophys Res Commun 2006
605
3

Biological identifications through DNA barcodes.
Paul D N Hebert, Alina Cywinska, Shelley L Ball, Jeremy R deWaard. Proc Biol Sci 2003
2

The chemokine system in diverse forms of macrophage activation and polarization.
Alberto Mantovani, Antonio Sica, Silvano Sozzani, Paola Allavena, Annunciata Vecchi, Massimo Locati. Trends Immunol 2004
2

Apoptosis: a review of programmed cell death.
Susan Elmore. Toxicol Pathol 2007
2

Macrophage activation and polarization: nomenclature and experimental guidelines.
Peter J Murray, Judith E Allen, Subhra K Biswas, Edward A Fisher, Derek W Gilroy, Sergij Goerdt, Siamon Gordon, John A Hamilton, Lionel B Ivashkiv, Toby Lawrence,[...]. Immunity 2014
2

Mapping and quantifying mammalian transcriptomes by RNA-Seq.
Ali Mortazavi, Brian A Williams, Kenneth McCue, Lorian Schaeffer, Barbara Wold. Nat Methods 2008
2

Global cancer statistics 2018: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries.
Freddie Bray, Jacques Ferlay, Isabelle Soerjomataram, Rebecca L Siegel, Lindsey A Torre, Ahmedin Jemal. CA Cancer J Clin 2018
2

Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities.
Patrick D Schloss, Sarah L Westcott, Thomas Ryabin, Justine R Hall, Martin Hartmann, Emily B Hollister, Ryan A Lesniewski, Brian B Oakley, Donovan H Parks, Courtney J Robinson,[...]. Appl Environ Microbiol 2009
2

Improved HF183 quantitative real-time PCR assay for characterization of human fecal pollution in ambient surface water samples.
Hyatt C Green, Richard A Haugland, Manju Varma, Hana T Millen, Mark A Borchardt, Katharine G Field, William A Walters, R Knight, Mano Sivaganesan, Catherine A Kelty,[...]. Appl Environ Microbiol 2014
108
2

UCHIME improves sensitivity and speed of chimera detection.
Robert C Edgar, Brian J Haas, Jose C Clemente, Christopher Quince, Rob Knight. Bioinformatics 2011
2

Primer3Plus, an enhanced web interface to Primer3.
Andreas Untergasser, Harm Nijveen, Xiangyu Rao, Ton Bisseling, René Geurts, Jack A M Leunissen. Nucleic Acids Res 2007
2


The need for transparency and good practices in the qPCR literature.
Stephen A Bustin, Vladimir Benes, Jeremy Garson, Jan Hellemans, Jim Huggett, Mikael Kubista, Reinhold Mueller, Tania Nolan, Michael W Pfaffl, Gregory Shipley,[...]. Nat Methods 2013
167
2

Quantification of mRNA using real-time RT-PCR.
Tania Nolan, Rebecca E Hands, Stephen A Bustin. Nat Protoc 2006
2

Simultaneous amplification and detection of specific DNA sequences.
R Higuchi, G Dollinger, P S Walsh, R Griffith. Biotechnology (N Y) 1992
419
2

qPCR primer design revisited.
Stephen Bustin, Jim Huggett. Biomol Detect Quantif 2017
68
2


Eleven golden rules of quantitative RT-PCR.
Michael K Udvardi, Tomasz Czechowski, Wolf-Rüdiger Scheible. Plant Cell 2008
363
2


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.