A citation-based method for searching scientific literature

Stephen A Bustin, Vladimir Benes, Jeremy A Garson, Jan Hellemans, Jim Huggett, Mikael Kubista, Reinhold Mueller, Tania Nolan, Michael W Pfaffl, Gregory L Shipley, Jo Vandesompele, Carl T Wittwer. Clin Chem 2009
Times Cited: 7883







List of co-cited articles
134 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes.
Jo Vandesompele, Katleen De Preter, Filip Pattyn, Bruce Poppe, Nadine Van Roy, Anne De Paepe, Frank Speleman. Genome Biol 2002
19



Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
6

Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR) data.
Christian Ramakers, Jan M Ruijter, Ronald H Lekanne Deprez, Antoon F M Moorman. Neurosci Lett 2003
5

Analyzing real-time PCR data by the comparative C(T) method.
Thomas D Schmittgen, Kenneth J Livak. Nat Protoc 2008
5

miRDeepFinder: a miRNA analysis tool for deep sequencing of plant small RNAs.
Fuliang Xie, Peng Xiao, Dongliang Chen, Lei Xu, Baohong Zhang. Plant Mol Biol 2012
534
5

Primer-BLAST: a tool to design target-specific primers for polymerase chain reaction.
Jian Ye, George Coulouris, Irena Zaretskaya, Ioana Cutcutache, Steve Rozen, Thomas L Madden. BMC Bioinformatics 2012
4

Amplification efficiency: linking baseline and bias in the analysis of quantitative PCR data.
J M Ruijter, C Ramakers, W M H Hoogaars, Y Karlen, O Bakker, M J B van den Hoff, A F M Moorman. Nucleic Acids Res 2009
4

Reference genes in real-time PCR.
Bartłomiej Kozera, Marcin Rapacz. J Appl Genet 2013
408
4

Selection of housekeeping genes for gene expression studies in human reticulocytes using real-time PCR.
Nicholas Silver, Steve Best, Jie Jiang, Swee Lay Thein. BMC Mol Biol 2006
756
4

HISAT: a fast spliced aligner with low memory requirements.
Daehwan Kim, Ben Langmead, Steven L Salzberg. Nat Methods 2015
3

Basic local alignment search tool.
S F Altschul, W Gish, W Miller, E W Myers, D J Lipman. J Mol Biol 1990
3


Overview of MicroRNA Biogenesis, Mechanisms of Actions, and Circulation.
Jacob O'Brien, Heyam Hayder, Yara Zayed, Chun Peng. Front Endocrinol (Lausanne) 2018
808
3

Trimmomatic: a flexible trimmer for Illumina sequence data.
Anthony M Bolger, Marc Lohse, Bjoern Usadel. Bioinformatics 2014
3

How to do successful gene expression analysis using real-time PCR.
Stefaan Derveaux, Jo Vandesompele, Jan Hellemans. Methods 2010
374
3

Real-time RT-PCR normalisation; strategies and considerations.
J Huggett, K Dheda, S Bustin, A Zumla. Genes Immun 2005
3

Validation of reference genes for quantitative real-time PCR during leaf and flower development in Petunia hybrida.
Izaskun Mallona, Sandra Lischewski, Julia Weiss, Bettina Hause, Marcos Egea-Cortines. BMC Plant Biol 2010
159
3


Primer3--new capabilities and interfaces.
Andreas Untergasser, Ioana Cutcutache, Triinu Koressaar, Jian Ye, Brant C Faircloth, Maido Remm, Steven G Rozen. Nucleic Acids Res 2012
3


Human housekeeping genes, revisited.
Eli Eisenberg, Erez Y Levanon. Trends Genet 2013
576
3

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms.
Sudhir Kumar, Glen Stecher, Michael Li, Christina Knyaz, Koichiro Tamura. Mol Biol Evol 2018
3

Reference gene validation for RT-qPCR, a note on different available software packages.
Ward De Spiegelaere, Jutta Dern-Wieloch, Roswitha Weigel, Valérie Schumacher, Hubert Schorle, Daniel Nettersheim, Martin Bergmann, Ralph Brehm, Sabine Kliesch, Linos Vandekerckhove,[...]. PLoS One 2015
112
3

Stability evaluation of reference genes for gene expression analysis by RT-qPCR in soybean under different conditions.
Qiao Wan, Shuilian Chen, Zhihui Shan, Zhonglu Yang, Limiao Chen, Chanjuan Zhang, Songli Yuan, Qinnan Hao, Xiaojuan Zhang, Dezhen Qiu,[...]. PLoS One 2017
21
14

miRTarBase 2020: updates to the experimentally validated microRNA-target interaction database.
Hsi-Yuan Huang, Yang-Chi-Dung Lin, Jing Li, Kai-Yao Huang, Sirjana Shrestha, Hsiao-Chin Hong, Yun Tang, Yi-Gang Chen, Chen-Nan Jin, Yuan Yu,[...]. Nucleic Acids Res 2020
177
3

Full-length transcriptome assembly from RNA-Seq data without a reference genome.
Manfred G Grabherr, Brian J Haas, Moran Yassour, Joshua Z Levin, Dawn A Thompson, Ido Amit, Xian Adiconis, Lin Fan, Raktima Raychowdhury, Qiandong Zeng,[...]. Nat Biotechnol 2011
3

The Ultimate qPCR Experiment: Producing Publication Quality, Reproducible Data the First Time.
Sean C Taylor, Katia Nadeau, Meysam Abbasi, Claude Lachance, Marie Nguyen, Joshua Fenrich. Trends Biotechnol 2019
97
3



Mapping and quantifying mammalian transcriptomes by RNA-Seq.
Ali Mortazavi, Brian A Williams, Kenneth McCue, Lorian Schaeffer, Barbara Wold. Nat Methods 2008
2


Methods to determine limit of detection and limit of quantification in quantitative real-time PCR (qPCR).
Amin Forootan, Robert Sjöback, Jens Björkman, Björn Sjögreen, Lucas Linz, Mikael Kubista. Biomol Detect Quantif 2017
141
2

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists.
Da Wei Huang, Brad T Sherman, Richard A Lempicki. Nucleic Acids Res 2009
2

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources.
Da Wei Huang, Brad T Sherman, Richard A Lempicki. Nat Protoc 2009
2


Cytoscape: a software environment for integrated models of biomolecular interaction networks.
Paul Shannon, Andrew Markiel, Owen Ozier, Nitin S Baliga, Jonathan T Wang, Daniel Ramage, Nada Amin, Benno Schwikowski, Trey Ideker. Genome Res 2003
2

SARS-CoV-2 Titers in Wastewater Are Higher than Expected from Clinically Confirmed Cases.
Fuqing Wu, Jianbo Zhang, Amy Xiao, Xiaoqiong Gu, Wei Lin Lee, Federica Armas, Kathryn Kauffman, William Hanage, Mariana Matus, Newsha Ghaeli,[...]. mSystems 2020
227
2

First confirmed detection of SARS-CoV-2 in untreated wastewater in Australia: A proof of concept for the wastewater surveillance of COVID-19 in the community.
Warish Ahmed, Nicola Angel, Janette Edson, Kyle Bibby, Aaron Bivins, Jake W O'Brien, Phil M Choi, Masaaki Kitajima, Stuart L Simpson, Jiaying Li,[...]. Sci Total Environ 2020
403
2

Asymptomatic cases in a family cluster with SARS-CoV-2 infection.
Xingfei Pan, Dexiong Chen, Yong Xia, Xinwei Wu, Tangsheng Li, Xueting Ou, Liyang Zhou, Jing Liu. Lancet Infect Dis 2020
291
2

First proof of the capability of wastewater surveillance for COVID-19 in India through detection of genetic material of SARS-CoV-2.
Manish Kumar, Arbind Kumar Patel, Anil V Shah, Janvi Raval, Neha Rajpara, Madhvi Joshi, Chaitanya G Joshi. Sci Total Environ 2020
117
2

Variability in the recovery of a virus concentration procedure in water: Implications for QMRA.
Susan Petterson, Ricardo Grøndahl-Rosado, Vegard Nilsen, Mette Myrmel, Lucy J Robertson. Water Res 2015
25
8

Making waves: Wastewater surveillance of SARS-CoV-2 for population-based health management.
Janelle R Thompson, Yarlagadda V Nancharaiah, Xiaoqiong Gu, Wei Lin Lee, Verónica B Rajal, Monamie B Haines, Rosina Girones, Lee Ching Ng, Eric J Alm, Stefan Wuertz. Water Res 2020
33
6

Measurement of SARS-CoV-2 RNA in wastewater tracks community infection dynamics.
Jordan Peccia, Alessandro Zulli, Doug E Brackney, Nathan D Grubaugh, Edward H Kaplan, Arnau Casanovas-Massana, Albert I Ko, Amyn A Malik, Dennis Wang, Mike Wang,[...]. Nat Biotechnol 2020
123
2

Temporal Detection and Phylogenetic Assessment of SARS-CoV-2 in Municipal Wastewater.
Artem Nemudryi, Anna Nemudraia, Tanner Wiegand, Kevin Surya, Murat Buyukyoruk, Calvin Cicha, Karl K Vanderwood, Royce Wilkinson, Blake Wiedenheft. Cell Rep Med 2020
142
2


Detection of norovirus genotype I.3b and II.4 in bioaccumulated blue mussels using different virus recovery methods.
Heidi Lange Comelli, Espen Rimstad, Stig Larsen, Mette Myrmel. Int J Food Microbiol 2008
29
6

Improved HF183 quantitative real-time PCR assay for characterization of human fecal pollution in ambient surface water samples.
Hyatt C Green, Richard A Haugland, Manju Varma, Hana T Millen, Mark A Borchardt, Katharine G Field, William A Walters, R Knight, Mano Sivaganesan, Catherine A Kelty,[...]. Appl Environ Microbiol 2014
124
2


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.