A citation-based method for searching scientific literature

Vladimir Kirkin, Trond Lamark, Yu-Shin Sou, Geir Bjørkøy, Jennifer L Nunn, Jack-Ansgar Bruun, Elena Shvets, David G McEwan, Terje H Clausen, Philipp Wild, Ivana Bilusic, Jean-Philippe Theurillat, Aud Øvervatn, Tetsuro Ishii, Zvulun Elazar, Masaaki Komatsu, Ivan Dikic, Terje Johansen. Mol Cell 2009
Times Cited: 781







List of co-cited articles
1776 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


p62/SQSTM1 binds directly to Atg8/LC3 to facilitate degradation of ubiquitinated protein aggregates by autophagy.
Serhiy Pankiv, Terje Høyvarde Clausen, Trond Lamark, Andreas Brech, Jack-Ansgar Bruun, Heidi Outzen, Aud Øvervatn, Geir Bjørkøy, Terje Johansen. J Biol Chem 2007
40

p62/SQSTM1 forms protein aggregates degraded by autophagy and has a protective effect on huntingtin-induced cell death.
Geir Bjørkøy, Trond Lamark, Andreas Brech, Heidi Outzen, Maria Perander, Aud Overvatn, Harald Stenmark, Terje Johansen. J Cell Biol 2005
33

Phosphorylation of the autophagy receptor optineurin restricts Salmonella growth.
Philipp Wild, Hesso Farhan, David G McEwan, Sebastian Wagner, Vladimir V Rogov, Nathan R Brady, Benjamin Richter, Jelena Korac, Oliver Waidmann, Chunaram Choudhary,[...]. Science 2011
881
22

The ubiquitin kinase PINK1 recruits autophagy receptors to induce mitophagy.
Michael Lazarou, Danielle A Sliter, Lesley A Kane, Shireen A Sarraf, Chunxin Wang, Jonathon L Burman, Dionisia P Sideris, Adam I Fogel, Richard J Youle. Nature 2015
22

Cargo recognition and trafficking in selective autophagy.
Alexandra Stolz, Andreas Ernst, Ivan Dikic. Nat Cell Biol 2014
737
21

Cargo recognition and degradation by selective autophagy.
Damián Gatica, Vikramjit Lahiri, Daniel J Klionsky. Nat Cell Biol 2018
487
21


The LIR motif - crucial for selective autophagy.
Åsa Birna Birgisdottir, Trond Lamark, Terje Johansen. J Cell Sci 2013
506
18

Selective autophagy mediated by autophagic adapter proteins.
Terje Johansen, Trond Lamark. Autophagy 2011
17

Mitochondrial outer-membrane protein FUNDC1 mediates hypoxia-induced mitophagy in mammalian cells.
Lei Liu, Du Feng, Guo Chen, Ming Chen, Qiaoxia Zheng, Pingping Song, Qi Ma, Chongzhuo Zhu, Rui Wang, Wanjun Qi,[...]. Nat Cell Biol 2012
885
17

The TBK1 adaptor and autophagy receptor NDP52 restricts the proliferation of ubiquitin-coated bacteria.
Teresa L M Thurston, Grigory Ryzhakov, Stuart Bloor, Natalia von Muhlinen, Felix Randow. Nat Immunol 2009
615
17

Regulation of endoplasmic reticulum turnover by selective autophagy.
Aliaksandr Khaminets, Theresa Heinrich, Muriel Mari, Paolo Grumati, Antje K Huebner, Masato Akutsu, Lutz Liebmann, Alexandra Stolz, Sandor Nietzsche, Nicole Koch,[...]. Nature 2015
492
17

FIP200 Claw Domain Binding to p62 Promotes Autophagosome Formation at Ubiquitin Condensates.
Eleonora Turco, Marie Witt, Christine Abert, Tobias Bock-Bierbaum, Ming-Yuan Su, Riccardo Trapannone, Martin Sztacho, Alberto Danieli, Xiaoshan Shi, Gabriele Zaffagnini,[...]. Mol Cell 2019
133
17

Mechanism and medical implications of mammalian autophagy.
Ivan Dikic, Zvulun Elazar. Nat Rev Mol Cell Biol 2018
16


LC3, a mammalian homologue of yeast Apg8p, is localized in autophagosome membranes after processing.
Y Kabeya, N Mizushima, T Ueno, A Yamamoto, T Kirisako, T Noda, E Kominami, Y Ohsumi, T Yoshimori. EMBO J 2000
15

Homeostatic levels of p62 control cytoplasmic inclusion body formation in autophagy-deficient mice.
Masaaki Komatsu, Satoshi Waguri, Masato Koike, Yu-Shin Sou, Takashi Ueno, Taichi Hara, Noboru Mizushima, Jun-Ichi Iwata, Junji Ezaki, Shigeo Murata,[...]. Cell 2007
15

Polyubiquitin chain-induced p62 phase separation drives autophagic cargo segregation.
Daxiao Sun, Rongbo Wu, Jingxiang Zheng, Pilong Li, Li Yu. Cell Res 2018
178
15

Nix is a selective autophagy receptor for mitochondrial clearance.
Ivana Novak, Vladimir Kirkin, David G McEwan, Ji Zhang, Philipp Wild, Alexis Rozenknop, Vladimir Rogov, Frank Löhr, Doris Popovic, Angelo Occhipinti,[...]. EMBO Rep 2010
823
14

Structural basis for sorting mechanism of p62 in selective autophagy.
Yoshinobu Ichimura, Taichi Kumanomidou, Yu-shin Sou, Tsunehiro Mizushima, Junji Ezaki, Takashi Ueno, Eiki Kominami, Takashi Yamane, Keiji Tanaka, Masaaki Komatsu. J Biol Chem 2008
550
14

CCPG1 Is a Non-canonical Autophagy Cargo Receptor Essential for ER-Phagy and Pancreatic ER Proteostasis.
Matthew D Smith, Margaret E Harley, Alain J Kemp, Jimi Wills, Martin Lee, Mark Arends, Alex von Kriegsheim, Christian Behrends, Simon Wilkinson. Dev Cell 2018
199
14

The Cargo Receptor NDP52 Initiates Selective Autophagy by Recruiting the ULK Complex to Cytosol-Invading Bacteria.
Benjamin J Ravenhill, Keith B Boyle, Natalia von Muhlinen, Cara J Ellison, Glenn R Masson, Elsje G Otten, Agnes Foeglein, Roger Williams, Felix Randow. Mol Cell 2019
138
14

Spatiotemporal Control of ULK1 Activation by NDP52 and TBK1 during Selective Autophagy.
Jose Norberto S Vargas, Chunxin Wang, Eric Bunker, Ling Hao, Dragan Maric, Giampietro Schiavo, Felix Randow, Richard J Youle. Mol Cell 2019
185
14

A ubiquitin-like system mediates protein lipidation.
Y Ichimura, T Kirisako, T Takao, Y Satomi, Y Shimonishi, N Ishihara, N Mizushima, I Tanida, E Kominami, M Ohsumi,[...]. Nature 2000
14

Autophagy: renovation of cells and tissues.
Noboru Mizushima, Masaaki Komatsu. Cell 2011
13

Ubiquitin-independent function of optineurin in autophagic clearance of protein aggregates.
Jelena Korac, Veronique Schaeffer, Igor Kovacevic, Albrecht M Clement, Benno Jungblut, Christian Behl, Janos Terzic, Ivan Dikic. J Cell Sci 2013
218
13


p62 filaments capture and present ubiquitinated cargos for autophagy.
Gabriele Zaffagnini, Adriana Savova, Alberto Danieli, Julia Romanov, Shirley Tremel, Michael Ebner, Thomas Peterbauer, Martin Sztacho, Riccardo Trapannone, Abul K Tarafder,[...]. EMBO J 2018
156
13

ATL3 Is a Tubular ER-Phagy Receptor for GABARAP-Mediated Selective Autophagy.
Qingzhou Chen, Ya Xiao, Peiyuan Chai, Pengli Zheng, Junlin Teng, Jianguo Chen. Curr Biol 2019
119
12

The selective macroautophagic degradation of aggregated proteins requires the PI3P-binding protein Alfy.
Maria Filimonenko, Pauline Isakson, Kim D Finley, Monique Anderson, Hyun Jeong, Thomas J Melia, Bryan J Bartlett, Katherine M Myers, Hanne C G Birkeland, Trond Lamark,[...]. Mol Cell 2010
309
12

The selective autophagy substrate p62 activates the stress responsive transcription factor Nrf2 through inactivation of Keap1.
Masaaki Komatsu, Hirofumi Kurokawa, Satoshi Waguri, Keiko Taguchi, Akira Kobayashi, Yoshinobu Ichimura, Yu-Shin Sou, Izumi Ueno, Ayako Sakamoto, Kit I Tong,[...]. Nat Cell Biol 2010
12

TBK-1 promotes autophagy-mediated antimicrobial defense by controlling autophagosome maturation.
Manohar Pilli, John Arko-Mensah, Marisa Ponpuak, Esteban Roberts, Sharon Master, Michael A Mandell, Nicolas Dupont, Wojciech Ornatowski, Shanya Jiang, Steven B Bradfute,[...]. Immunity 2012
420
12

The role of Atg proteins in autophagosome formation.
Noboru Mizushima, Tamotsu Yoshimori, Yoshinori Ohsumi. Annu Rev Cell Dev Biol 2011
12


Ubiquitin-Dependent And Independent Signals In Selective Autophagy.
Aliaksandr Khaminets, Christian Behl, Ivan Dikic. Trends Cell Biol 2016
421
12

Serine 403 phosphorylation of p62/SQSTM1 regulates selective autophagic clearance of ubiquitinated proteins.
Gen Matsumoto, Koji Wada, Misako Okuno, Masaru Kurosawa, Nobuyuki Nukina. Mol Cell 2011
425
12

LC3C, bound selectively by a noncanonical LIR motif in NDP52, is required for antibacterial autophagy.
Natalia von Muhlinen, Masato Akutsu, Benjamin J Ravenhill, Ágnes Foeglein, Stuart Bloor, Trevor J Rutherford, Stefan M V Freund, David Komander, Felix Randow. Mol Cell 2012
213
12


Translocon component Sec62 acts in endoplasmic reticulum turnover during stress recovery.
Fiorenza Fumagalli, Julia Noack, Timothy J Bergmann, Eduardo Cebollero, Giorgia Brambilla Pisoni, Elisa Fasana, Ilaria Fregno, Carmela Galli, Marisa Loi, Tatiana Soldà,[...]. Nat Cell Biol 2016
216
12

Phosphorylation of OPTN by TBK1 enhances its binding to Ub chains and promotes selective autophagy of damaged mitochondria.
Benjamin Richter, Danielle A Sliter, Lina Herhaus, Alexandra Stolz, Chunxin Wang, Petra Beli, Gabriele Zaffagnini, Philipp Wild, Sascha Martens, Sebastian A Wagner,[...]. Proc Natl Acad Sci U S A 2016
399
12

NBR1 acts as an autophagy receptor for peroxisomes.
Elizabeth Deosaran, Kenneth B Larsen, Rong Hua, Graeme Sargent, Yuqing Wang, Sarah Kim, Trond Lamark, Miluska Jauregui, Kelsey Law, Jennifer Lippincott-Schwartz,[...]. J Cell Sci 2013
219
11

Molecular definitions of autophagy and related processes.
Lorenzo Galluzzi, Eric H Baehrecke, Andrea Ballabio, Patricia Boya, José Manuel Bravo-San Pedro, Francesco Cecconi, Augustine M Choi, Charleen T Chu, Patrice Codogno, Maria Isabel Colombo,[...]. EMBO J 2017
820
11

Full length RTN3 regulates turnover of tubular endoplasmic reticulum via selective autophagy.
Paolo Grumati, Giulio Morozzi, Soraya Hölper, Muriel Mari, Marie-Lena Ie Harwardt, Riqiang Yan, Stefan Müller, Fulvio Reggiori, Mike Heilemann, Ivan Dikic. Elife 2017
201
11

The coming of age of chaperone-mediated autophagy.
Susmita Kaushik, Ana Maria Cuervo. Nat Rev Mol Cell Biol 2018
467
11

Autophagic Degradation of the 26S Proteasome Is Mediated by the Dual ATG8/Ubiquitin Receptor RPN10 in Arabidopsis.
Richard S Marshall, Faqiang Li, David C Gemperline, Adam J Book, Richard D Vierstra. Mol Cell 2015
258
11

Mechanisms of Selective Autophagy.
Gabriele Zaffagnini, Sascha Martens. J Mol Biol 2016
315
11

TEX264 Is an Endoplasmic Reticulum-Resident ATG8-Interacting Protein Critical for ER Remodeling during Nutrient Stress.
Heeseon An, Alban Ordureau, Joao A Paulo, Christopher J Shoemaker, Vladimir Denic, J Wade Harper. Mol Cell 2019
117
11

Autophagy in immunity and inflammation.
Beth Levine, Noboru Mizushima, Herbert W Virgin. Nature 2011
10

Interaction codes within the family of mammalian Phox and Bem1p domain-containing proteins.
Trond Lamark, Maria Perander, Heidi Outzen, Kurt Kristiansen, Aud Øvervatn, Espen Michaelsen, Geir Bjørkøy, Terje Johansen. J Biol Chem 2003
277
10

p62/SQSTM1 is a target gene for transcription factor NRF2 and creates a positive feedback loop by inducing antioxidant response element-driven gene transcription.
Ashish Jain, Trond Lamark, Eva Sjøttem, Kenneth Bowitz Larsen, Jane Atesoh Awuh, Aud Øvervatn, Michael McMahon, John D Hayes, Terje Johansen. J Biol Chem 2010
916
10


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.