A citation-based method for searching scientific literature

Kenichi Hitomi, Luciano DiTacchio, Andrew S Arvai, Junpei Yamamoto, Sang-Tae Kim, Takeshi Todo, John A Tainer, Shigenori Iwai, Satchidananda Panda, Elizabeth D Getzoff. Proc Natl Acad Sci U S A 2009
Times Cited: 92







List of co-cited articles
1003 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



Crystal structure and mechanism of a DNA (6-4) photolyase.
Melanie J Maul, Thomas R M Barends, Andreas F Glas, Max J Cryle, Tatiana Domratcheva, Sabine Schneider, Ilme Schlichting, Thomas Carell. Angew Chem Int Ed Engl 2008
139
51

Crystal structure of DNA photolyase from Escherichia coli.
H W Park, S T Kim, A Sancar, J Deisenhofer. Science 1995
396
39


The cryptochromes: blue light photoreceptors in plants and animals.
Inês Chaves, Richard Pokorny, Martin Byrdin, Nathalie Hoang, Thorsten Ritz, Klaus Brettel, Lars-Oliver Essen, Gijsbertus T J van der Horst, Alfred Batschauer, Margaret Ahmad. Annu Rev Plant Biol 2011
496
33

Recognition and repair of UV lesions in loop structures of duplex DNA by DASH-type cryptochrome.
Richard Pokorny, Tobias Klar, Ulrich Hennecke, Thomas Carell, Alfred Batschauer, Lars-Oliver Essen. Proc Natl Acad Sci U S A 2008
127
31

Identification of a new cryptochrome class. Structure, function, and evolution.
Ronald Brudler, Kenichi Hitomi, Hiromi Daiyasu, Hiroyuki Toh, Ken-ichi Kucho, Masahiro Ishiura, Minoru Kanehisa, Victoria A Roberts, Takeshi Todo, John A Tainer,[...]. Mol Cell 2003
228
31

Structure of the photolyase-like domain of cryptochrome 1 from Arabidopsis thaliana.
Chad A Brautigam, Barbara S Smith, Zhiquan Ma, Maya Palnitkar, Diana R Tomchick, Mischa Machius, Johann Deisenhofer. Proc Natl Acad Sci U S A 2004
218
29

Crystal structure of a photolyase bound to a CPD-like DNA lesion after in situ repair.
Alexandra Mees, Tobias Klar, Petra Gnau, Ulrich Hennecke, Andre P M Eker, Thomas Carell, Lars-Oliver Essen. Science 2004
268
28

Role of two histidines in the (6-4) photolyase reaction.
K Hitomi, H Nakamura, S T Kim, T Mizukoshi, T Ishikawa, S Iwai, T Todo. J Biol Chem 2001
96
27

Intraprotein radical transfer during photoactivation of DNA photolyase.
C Aubert, M H Vos, P Mathis, A P Eker, K Brettel. Nature 2000
319
26

Crystal structure of cryptochrome 3 from Arabidopsis thaliana and its implications for photolyase activity.
Yihua Huang, Richard Baxter, Barbara S Smith, Carrie L Partch, Christopher L Colbert, Johann Deisenhofer. Proc Natl Acad Sci U S A 2006
93
25

Dynamics and mechanism of repair of ultraviolet-induced (6-4) photoproduct by photolyase.
Jiang Li, Zheyun Liu, Chuang Tan, Xunmin Guo, Lijuan Wang, Aziz Sancar, Dongping Zhong. Nature 2010
138
23

A new photoreactivating enzyme that specifically repairs ultraviolet light-induced (6-4)photoproducts.
T Todo, H Takemori, H Ryo, M Ihara, T Matsunaga, O Nikaido, K Sato, T Nomura. Nature 1993
224
22

Crystal structure of DNA photolyase from Anacystis nidulans.
T Tamada, K Kitadokoro, Y Higuchi, K Inaka, A Yasui, P E de Ruiter, A P Eker, K Miki. Nat Struct Biol 1997
160
21


Cryptochrome mediates light-dependent magnetosensitivity in Drosophila.
Robert J Gegear, Amy Casselman, Scott Waddell, Steven M Reppert. Nature 2008
248
21

A novel photoreaction mechanism for the circadian blue light photoreceptor Drosophila cryptochrome.
Alex Berndt, Tilman Kottke, Helena Breitkreuz, Radovan Dvorsky, Sven Hennig, Michael Alexander, Eva Wolf. J Biol Chem 2007
146
20

Mammalian Cry1 and Cry2 are essential for maintenance of circadian rhythms.
G T van der Horst, M Muijtjens, K Kobayashi, R Takano, S Kanno, M Takao, J de Wit, A Verkerk, A P Eker, D van Leenen,[...]. Nature 1999
995
20

The cryptochromes.
Chentao Lin, Takeshi Todo. Genome Biol 2005
216
19

Binding and catalytic properties of Xenopus (6-4) photolyase.
K Hitomi, S T Kim, S Iwai, N Harima, E Otoshi, M Ikenaga, T Todo. J Biol Chem 1997
89
20

The cryb mutation identifies cryptochrome as a circadian photoreceptor in Drosophila.
R Stanewsky, M Kaneko, P Emery, B Beretta, K Wager-Smith, S A Kay, M Rosbash, J C Hall. Cell 1998
696
19


Reaction mechanisms of DNA photolyase.
Klaus Brettel, Martin Byrdin. Curr Opin Struct Biol 2010
112
19

Crystal structures of an archaeal class II DNA photolyase and its complex with UV-damaged duplex DNA.
Stephan Kiontke, Yann Geisselbrecht, Richard Pokorny, Thomas Carell, Alfred Batschauer, Lars-Oliver Essen. EMBO J 2011
67
26


Purification and characterization of a type III photolyase from Caulobacter crescentus.
Nuri Oztürk, Ya-Ting Kao, Christopher P Selby, I Halil Kavakli, Carrie L Partch, Dongping Zhong, Aziz Sancar. Biochemistry 2008
39
43

Animal type 1 cryptochromes. Analysis of the redox state of the flavin cofactor by site-directed mutagenesis.
Nuri Öztürk, Sang-Hun Song, Christopher P Selby, Aziz Sancar. J Biol Chem 2008
97
18

Electron nuclear double resonance differentiates complementary roles for active site histidines in (6-4) photolyase.
Erik Schleicher, Kenichi Hitomi, Christopher W M Kay, Elizabeth D Getzoff, Takeshi Todo, Stefan Weber. J Biol Chem 2007
68
23



SCF(FBXL3) ubiquitin ligase targets cryptochromes at their cofactor pocket.
Weiman Xing, Luca Busino, Thomas R Hinds, Samuel T Marionni, Nabiha H Saifee, Matthew F Bush, Michele Pagano, Ning Zheng. Nature 2013
152
17

Crystal structure of a prokaryotic (6-4) photolyase with an Fe-S cluster and a 6,7-dimethyl-8-ribityllumazine antenna chromophore.
Fan Zhang, Patrick Scheerer, Inga Oberpichler, Tilman Lamparter, Norbert Krauß. Proc Natl Acad Sci U S A 2013
63
25

Identification of cryptochrome DASH from vertebrates.
Hiromi Daiyasu, Tomoko Ishikawa, Kei-ichi Kuma, Shigenori Iwai, Takeshi Todo, Hiroyuki Toh. Genes Cells 2004
86
17

Reaction mechanism of (6-4) photolyase.
X Zhao, J Liu, D S Hsu, S Zhao, J S Taylor, A Sancar. J Biol Chem 1997
119
16

Flavin adenine dinucleotide as a chromophore of the Xenopus (6-4)photolyase.
T Todo, S T Kim, K Hitomi, E Otoshi, T Inui, H Morioka, H Kobayashi, E Ohtsuka, H Toh, M Ikenaga. Nucleic Acids Res 1997
71
21

Cryptochrome blue light photoreceptors are activated through interconversion of flavin redox states.
Jean-Pierre Bouly, Erik Schleicher, Maribel Dionisio-Sese, Filip Vandenbussche, Dominique Van Der Straeten, Nadia Bakrim, Stefan Meier, Alfred Batschauer, Paul Galland, Robert Bittl,[...]. J Biol Chem 2007
252
16

Bacterial cryptochrome and photolyase: characterization of two photolyase-like genes of Synechocystis sp. PCC6803.
K Hitomi, K Okamoto, H Daiyasu, H Miyashita, S Iwai, H Toh, M Ishiura, T Todo. Nucleic Acids Res 2000
84
17

Differential regulation of mammalian period genes and circadian rhythmicity by cryptochromes 1 and 2.
M H Vitaterna, C P Selby, T Todo, H Niwa, C Thompson, E M Fruechte, K Hitomi, R J Thresher, T Ishikawa, J Miyazaki,[...]. Proc Natl Acad Sci U S A 1999
521
16

Structure of full-length Drosophila cryptochrome.
Brian D Zoltowski, Anand T Vaidya, Deniz Top, Joanne Widom, Michael W Young, Brian R Crane. Nature 2011
112
16

Role of structural plasticity in signal transduction by the cryptochrome blue-light photoreceptor.
Carrie L Partch, Michael W Clarkson, Sezgin Ozgür, Andrew L Lee, Aziz Sancar. Biochemistry 2005
140
15


Blue-light-induced changes in Arabidopsis cryptochrome 1 probed by FTIR difference spectroscopy.
Tilman Kottke, Alfred Batschauer, Margaret Ahmad, Joachim Heberle. Biochemistry 2006
86
16

mCRY1 and mCRY2 are essential components of the negative limb of the circadian clock feedback loop.
K Kume, M J Zylka, S Sriram, L P Shearman, D R Weaver, X Jin, E S Maywood, M H Hastings, S M Reppert. Cell 1999
15

Structural biology of DNA photolyases and cryptochromes.
Markus Müller, Thomas Carell. Curr Opin Struct Biol 2009
88
15

Molecular evolution of the photolyase-blue-light photoreceptor family.
S Kanai, R Kikuno, H Toh, H Ryo, T Todo. J Mol Evol 1997
124
15

CryB from Rhodobacter sphaeroides: a unique class of cryptochromes with new cofactors.
Yann Geisselbrecht, Sebastian Frühwirth, Claudia Schroeder, Antonio J Pierik, Gabriele Klug, Lars-Oliver Essen. EMBO Rep 2012
66
21

Structures of Drosophila cryptochrome and mouse cryptochrome1 provide insight into circadian function.
Anna Czarna, Alex Berndt, Hari Raj Singh, Astrid Grudziecki, Andreas G Ladurner, Gyula Timinszky, Achim Kramer, Eva Wolf. Cell 2013
128
15

Cryptochrome structure and signal transduction.
Chentao Lin, Dror Shalitin. Annu Rev Plant Biol 2003
287
14

The C termini of Arabidopsis cryptochromes mediate a constitutive light response.
H Q Yang, Y J Wu, R H Tang, D Liu, Y Liu, A R Cashmore. Cell 2000
285
14


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.