A citation-based method for searching scientific literature

Lakshmi K Matukumalli, Cynthia T Lawley, Robert D Schnabel, Jeremy F Taylor, Mark F Allan, Michael P Heaton, Jeff O'Connell, Stephen S Moore, Timothy P L Smith, Tad S Sonstegard, Curtis P Van Tassell. PLoS One 2009
Times Cited: 566







List of co-cited articles
757 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


PLINK: a tool set for whole-genome association and population-based linkage analyses.
Shaun Purcell, Benjamin Neale, Kathe Todd-Brown, Lori Thomas, Manuel A R Ferreira, David Bender, Julian Maller, Pamela Sklar, Paul I W de Bakker, Mark J Daly,[...]. Am J Hum Genet 2007
33


Prediction of total genetic value using genome-wide dense marker maps.
T H Meuwissen, B J Hayes, M E Goddard. Genetics 2001
23

A whole-genome assembly of the domestic cow, Bos taurus.
Aleksey V Zimin, Arthur L Delcher, Liliana Florea, David R Kelley, Michael C Schatz, Daniela Puiu, Finnian Hanrahan, Geo Pertea, Curtis P Van Tassell, Tad S Sonstegard,[...]. Genome Biol 2009
750
16

Fast model-based estimation of ancestry in unrelated individuals.
David H Alexander, John Novembre, Kenneth Lange. Genome Res 2009
16

Worldwide patterns of ancestry, divergence, and admixture in domesticated cattle.
Jared E Decker, Stephanie D McKay, Megan M Rolf, Jaewoo Kim, Antonio Molina Alcalá, Tad S Sonstegard, Olivier Hanotte, Anders Götherström, Christopher M Seabury, Lisa Praharani,[...]. PLoS Genet 2014
212
16

The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
14

Insights into the genetic history of French cattle from dense SNP data on 47 worldwide breeds.
Mathieu Gautier, Denis Laloë, Katayoun Moazami-Goudarzi. PLoS One 2010
114
14

Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle.
Hans D Daetwyler, Aurélien Capitan, Hubert Pausch, Paul Stothard, Rianne van Binsbergen, Rasmus F Brøndum, Xiaoping Liao, Anis Djari, Sabrina C Rodriguez, Cécile Grohs,[...]. Nat Genet 2014
444
14

A new approach for efficient genotype imputation using information from relatives.
Mehdi Sargolzaei, Jacques P Chesnais, Flavio S Schenkel. BMC Genomics 2014
438
13

Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds.
Richard A Gibbs, Jeremy F Taylor, Curtis P Van Tassell, William Barendse, Kellye A Eversole, Clare A Gill, Ronnie D Green, Debora L Hamernik, Steven M Kappes, Sigbjørn Lien,[...]. Science 2009
501
12

The genome sequence of taurine cattle: a window to ruminant biology and evolution.
Christine G Elsik, Ross L Tellam, Kim C Worley, Richard A Gibbs, Donna M Muzny, George M Weinstock, David L Adelson, Evan E Eichler, Laura Elnitski, Roderic Guigó,[...]. Science 2009
728
11


Design of a high density SNP genotyping assay in the pig using SNPs identified and characterized by next generation sequencing technology.
Antonio M Ramos, Richard P M A Crooijmans, Nabeel A Affara, Andreia J Amaral, Alan L Archibald, Jonathan E Beever, Christian Bendixen, Carol Churcher, Richard Clark, Patrick Dehais,[...]. PLoS One 2009
415
11

Design of a bovine low-density SNP array optimized for imputation.
Didier Boichard, Hoyoung Chung, Romain Dassonneville, Xavier David, André Eggen, Sébastien Fritz, Kimberly J Gietzen, Ben J Hayes, Cynthia T Lawley, Tad S Sonstegard,[...]. PLoS One 2012
108
11

Second-generation PLINK: rising to the challenge of larger and richer datasets.
Christopher C Chang, Carson C Chow, Laurent Cam Tellier, Shashaank Vattikuti, Shaun M Purcell, James J Lee. Gigascience 2015
11

WIDDE: a Web-Interfaced next generation database for genetic diversity exploration, with a first application in cattle.
Guilhem Sempéré, Katayoun Moazami-Goudarzi, André Eggen, Denis Laloë, Mathieu Gautier, Laurence Flori. BMC Genomics 2015
37
27

The Ensembl Variant Effect Predictor.
William McLaren, Laurent Gil, Sarah E Hunt, Harpreet Singh Riat, Graham R S Ritchie, Anja Thormann, Paul Flicek, Fiona Cunningham. Genome Biol 2016
10

The development and characterization of a 60K SNP chip for chicken.
Martien A M Groenen, Hendrik-Jan Megens, Yalda Zare, Wesley C Warren, LaDeana W Hillier, Richard P M A Crooijmans, Addie Vereijken, Ron Okimoto, William M Muir, Hans H Cheng. BMC Genomics 2011
129
10

Ascertainment biases in SNP chips affect measures of population divergence.
Anders Albrechtsen, Finn Cilius Nielsen, Rasmus Nielsen. Mol Biol Evol 2010
184
10

De novo assembly of the cattle reference genome with single-molecule sequencing.
Benjamin D Rosen, Derek M Bickhart, Robert D Schnabel, Sergey Koren, Christine G Elsik, Elizabeth Tseng, Troy N Rowan, Wai Y Low, Aleksey Zimin, Christine Couldrey,[...]. Gigascience 2020
148
10

Runs of homozygosity and population history in cattle.
Deirdre C Purfield, Donagh P Berry, Sinead McParland, Daniel G Bradley. BMC Genet 2012
221
9

A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species.
Robert J Elshire, Jeffrey C Glaubitz, Qi Sun, Jesse A Poland, Ken Kawamoto, Edward S Buckler, Sharon E Mitchell. PLoS One 2011
9

Development of a high density 600K SNP genotyping array for chicken.
Andreas Kranis, Almas A Gheyas, Clarissa Boschiero, Frances Turner, Le Yu, Sarah Smith, Richard Talbot, Ali Pirani, Fiona Brew, Pete Kaiser,[...]. BMC Genomics 2013
196
9

GCTA: a tool for genome-wide complex trait analysis.
Jian Yang, S Hong Lee, Michael E Goddard, Peter M Visscher. Am J Hum Genet 2011
9

Changes in genetic selection differentials and generation intervals in US Holstein dairy cattle as a result of genomic selection.
Adriana García-Ruiz, John B Cole, Paul M VanRaden, George R Wiggans, Felipe J Ruiz-López, Curtis P Van Tassell. Proc Natl Acad Sci U S A 2016
215
9

Genomic Selection in Dairy Cattle: The USDA Experience.
George R Wiggans, John B Cole, Suzanne M Hubbard, Tad S Sonstegard. Annu Rev Anim Biosci 2017
119
8

Classic selective sweeps revealed by massive sequencing in cattle.
Saber Qanbari, Hubert Pausch, Sandra Jansen, Mehmet Somel, Tim M Strom, Ruedi Fries, Rasmus Nielsen, Henner Simianer. PLoS Genet 2014
132
8



Extension of the bayesian alphabet for genomic selection.
David Habier, Rohan L Fernando, Kadir Kizilkaya, Dorian J Garrick. BMC Bioinformatics 2011
554
8

Runs of homozygosity in European populations.
Ruth McQuillan, Anne-Louise Leutenegger, Rehab Abdel-Rahman, Christopher S Franklin, Marijana Pericic, Lovorka Barac-Lauc, Nina Smolej-Narancic, Branka Janicijevic, Ozren Polasek, Albert Tenesa,[...]. Am J Hum Genet 2008
568
8

Efficiency of different strategies to mitigate ascertainment bias when using SNP panels in diversity studies.
Dorcus Kholofelo Malomane, Christian Reimer, Steffen Weigend, Annett Weigend, Ahmad Reza Sharifi, Henner Simianer. BMC Genomics 2018
38
21

A genomic map of climate adaptation in Mediterranean cattle breeds.
Laurence Flori, Katayoun Moazami-Goudarzi, Véronique Alary, Abdelillah Araba, Ismaïl Boujenane, Nadjet Boushaba, François Casabianca, Sara Casu, Roberta Ciampolini, Armelle Coeur D'Acier,[...]. Mol Ecol 2019
27
29

Linkage disequilibrium in finite populations.
W G Hill, A Robertson. Theor Appl Genet 1968
7


Population structure and eigenanalysis.
Nick Patterson, Alkes L Price, David Reich. PLoS Genet 2006
7

Ancient admixture in human history.
Nick Patterson, Priya Moorjani, Yontao Luo, Swapan Mallick, Nadin Rohland, Yiping Zhan, Teri Genschoreck, Teresa Webster, David Reich. Genetics 2012
998
7


Species composition and environmental adaptation of indigenous Chinese cattle.
Yahui Gao, Mathieu Gautier, Xiangdong Ding, Hao Zhang, Yachun Wang, Xi Wang, Md Omar Faruque, Junya Li, Shaohui Ye, Xiao Gou,[...]. Sci Rep 2017
49
14



A map of recent positive selection in the human genome.
Benjamin F Voight, Sridhar Kudaravalli, Xiaoquan Wen, Jonathan K Pritchard. PLoS Biol 2006
7

The impact of genetic architecture on genome-wide evaluation methods.
Hans D Daetwyler, Ricardo Pong-Wong, Beatriz Villanueva, John A Woolliams. Genetics 2010
393
7

A multi-breed reference panel and additional rare variants maximize imputation accuracy in cattle.
Troy N Rowan, Jesse L Hoff, Tamar E Crum, Jeremy F Taylor, Robert D Schnabel, Jared E Decker. Genet Sel Evol 2019
17
41

Application of phylogenetic networks in evolutionary studies.
Daniel H Huson, David Bryant. Mol Biol Evol 2006
7

Invited review: Genomic selection in dairy cattle: progress and challenges.
B J Hayes, P J Bowman, A J Chamberlain, M E Goddard. J Dairy Sci 2009
800
6

Invited review: reliability of genomic predictions for North American Holstein bulls.
P M VanRaden, C P Van Tassell, G R Wiggans, T S Sonstegard, R D Schnabel, J F Taylor, F S Schenkel. J Dairy Sci 2009
669
6

Using whole-genome sequence data to predict quantitative trait phenotypes in Drosophila melanogaster.
Ulrike Ober, Julien F Ayroles, Eric A Stone, Stephen Richards, Dianhui Zhu, Richard A Gibbs, Christian Stricker, Daniel Gianola, Martin Schlather, Trudy F C Mackay,[...]. PLoS Genet 2012
130
6

Whole-genome resequencing reveals world-wide ancestry and adaptive introgression events of domesticated cattle in East Asia.
Ningbo Chen, Yudong Cai, Qiuming Chen, Ran Li, Kun Wang, Yongzhen Huang, Songmei Hu, Shisheng Huang, Hucai Zhang, Zhuqing Zheng,[...]. Nat Commun 2018
116
6


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.