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Times Cited: 13875
Times Cited: 13875
Times Cited
Times Co-cited
Similarity
Features and development of Coot.
P Emsley, B Lohkamp, W G Scott, K Cowtan. Acta Crystallogr D Biol Crystallogr 2010
P Emsley, B Lohkamp, W G Scott, K Cowtan. Acta Crystallogr D Biol Crystallogr 2010
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PHENIX: a comprehensive Python-based system for macromolecular structure solution.
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Coot: model-building tools for molecular graphics.
Paul Emsley, Kevin Cowtan. Acta Crystallogr D Biol Crystallogr 2004
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REFMAC5 for the refinement of macromolecular crystal structures.
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MolProbity: all-atom structure validation for macromolecular crystallography.
Vincent B Chen, W Bryan Arendall, Jeffrey J Headd, Daniel A Keedy, Robert M Immormino, Gary J Kapral, Laura W Murray, Jane S Richardson, David C Richardson. Acta Crystallogr D Biol Crystallogr 2010
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Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix.
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Inference of macromolecular assemblies from crystalline state.
Evgeny Krissinel, Kim Henrick. J Mol Biol 2007
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How good are my data and what is the resolution?
Philip R Evans, Garib N Murshudov. Acta Crystallogr D Biol Crystallogr 2013
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Overview of the CCP4 suite and current developments.
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Towards automated crystallographic structure refinement with phenix.refine.
Pavel V Afonine, Ralf W Grosse-Kunstleve, Nathaniel Echols, Jeffrey J Headd, Nigel W Moriarty, Marat Mustyakimov, Thomas C Terwilliger, Alexandre Urzhumtsev, Peter H Zwart, Paul D Adams. Acta Crystallogr D Biol Crystallogr 2012
Pavel V Afonine, Ralf W Grosse-Kunstleve, Nathaniel Echols, Jeffrey J Headd, Nigel W Moriarty, Marat Mustyakimov, Thomas C Terwilliger, Alexandre Urzhumtsev, Peter H Zwart, Paul D Adams. Acta Crystallogr D Biol Crystallogr 2012
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[20] Processing of X-ray diffraction data collected in oscillation mode.
Zbyszek Otwinowski, Wladek Minor. Methods Enzymol 1997
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UCSF Chimera--a visualization system for exploratory research and analysis.
Eric F Pettersen, Thomas D Goddard, Conrad C Huang, Gregory S Couch, Daniel M Greenblatt, Elaine C Meng, Thomas E Ferrin. J Comput Chem 2004
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MolProbity: More and better reference data for improved all-atom structure validation.
Christopher J Williams, Jeffrey J Headd, Nigel W Moriarty, Michael G Prisant, Lizbeth L Videau, Lindsay N Deis, Vishal Verma, Daniel A Keedy, Bradley J Hintze, Vincent B Chen,[...]. Protein Sci 2018
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Highly accurate protein structure prediction with AlphaFold.
John Jumper, Richard Evans, Alexander Pritzel, Tim Green, Michael Figurnov, Olaf Ronneberger, Kathryn Tunyasuvunakool, Russ Bates, Augustin Žídek, Anna Potapenko,[...]. Nature 2021
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Refinement of macromolecular structures by the maximum-likelihood method.
G N Murshudov, A A Vagin, E J Dodson. Acta Crystallogr D Biol Crystallogr 1997
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ConSurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromolecules.
Haim Ashkenazy, Shiran Abadi, Eric Martz, Ofer Chay, Itay Mayrose, Tal Pupko, Nir Ben-Tal. Nucleic Acids Res 2016
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Deciphering key features in protein structures with the new ENDscript server.
Xavier Robert, Patrice Gouet. Nucleic Acids Res 2014
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Processing of X-ray diffraction data collected in oscillation mode.
Z Otwinowski, W Minor. Methods Enzymol 1997
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HKL-3000: the integration of data reduction and structure solution--from diffraction images to an initial model in minutes.
Wladek Minor, Marcin Cymborowski, Zbyszek Otwinowski, Maksymilian Chruszcz. Acta Crystallogr D Biol Crystallogr 2006
Wladek Minor, Marcin Cymborowski, Zbyszek Otwinowski, Maksymilian Chruszcz. Acta Crystallogr D Biol Crystallogr 2006
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Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions.
E Krissinel, K Henrick. Acta Crystallogr D Biol Crystallogr 2004
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Iterative model building, structure refinement and density modification with the PHENIX AutoBuild wizard.
Thomas C Terwilliger, Ralf W Grosse-Kunstleve, Pavel V Afonine, Nigel W Moriarty, Peter H Zwart, Li Wei Hung, Randy J Read, Paul D Adams. Acta Crystallogr D Biol Crystallogr 2008
Thomas C Terwilliger, Ralf W Grosse-Kunstleve, Pavel V Afonine, Nigel W Moriarty, Peter H Zwart, Li Wei Hung, Randy J Read, Paul D Adams. Acta Crystallogr D Biol Crystallogr 2008
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Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega.
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Automated macromolecular model building for X-ray crystallography using ARP/wARP version 7.
Gerrit Langer, Serge X Cohen, Victor S Lamzin, Anastassis Perrakis. Nat Protoc 2008
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MX2: a high-flux undulator microfocus beamline serving both the chemical and macromolecular crystallography communities at the Australian Synchrotron.
David Aragão, Jun Aishima, Hima Cherukuvada, Robert Clarken, Mark Clift, Nathan Philip Cowieson, Daniel Jesper Ericsson, Christine L Gee, Sofia Macedo, Nathan Mudie,[...]. J Synchrotron Radiat 2018
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cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination.
Ali Punjani, John L Rubinstein, David J Fleet, Marcus A Brubaker. Nat Methods 2017
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Integration, scaling, space-group assignment and post-refinement.
Wolfgang Kabsch. Acta Crystallogr D Biol Crystallogr 2010
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Data processing and analysis with the autoPROC toolbox.
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Clemens Vonrhein, Claus Flensburg, Peter Keller, Andrew Sharff, Oliver Smart, Wlodek Paciorek, Thomas Womack, Gérard Bricogne. Acta Crystallogr D Biol Crystallogr 2011
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MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy.
Shawn Q Zheng, Eugene Palovcak, Jean-Paul Armache, Kliment A Verba, Yifan Cheng, David A Agard. Nat Methods 2017
Shawn Q Zheng, Eugene Palovcak, Jean-Paul Armache, Kliment A Verba, Yifan Cheng, David A Agard. Nat Methods 2017
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Cryo-EM structure of the 2019-nCoV spike in the prefusion conformation.
Daniel Wrapp, Nianshuang Wang, Kizzmekia S Corbett, Jory A Goldsmith, Ching-Lin Hsieh, Olubukola Abiona, Barney S Graham, Jason S McLellan. Science 2020
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Structure of the SARS-CoV-2 spike receptor-binding domain bound to the ACE2 receptor.
Jun Lan, Jiwan Ge, Jinfang Yu, Sisi Shan, Huan Zhou, Shilong Fan, Qi Zhang, Xuanling Shi, Qisheng Wang, Linqi Zhang,[...]. Nature 2020
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Development and testing of a general amber force field.
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DIALS: implementation and evaluation of a new integration package.
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Improvements to the APBS biomolecular solvation software suite.
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Accurate prediction of protein structures and interactions using a three-track neural network.
Minkyung Baek, Frank DiMaio, Ivan Anishchenko, Justas Dauparas, Sergey Ovchinnikov, Gyu Rie Lee, Jue Wang, Qian Cong, Lisa N Kinch, R Dustin Schaeffer,[...]. Science 2021
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UCSF ChimeraX: Meeting modern challenges in visualization and analysis.
Thomas D Goddard, Conrad C Huang, Elaine C Meng, Eric F Pettersen, Gregory S Couch, John H Morris, Thomas E Ferrin. Protein Sci 2018
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Structural and functional ramifications of antigenic drift in recent SARS-CoV-2 variants.
Meng Yuan, Deli Huang, Chang-Chun D Lee, Nicholas C Wu, Abigail M Jackson, Xueyong Zhu, Hejun Liu, Linghang Peng, Marit J van Gils, Rogier W Sanders,[...]. Science 2021
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SARS-CoV-2 neutralizing antibody structures inform therapeutic strategies.
Christopher O Barnes, Claudia A Jette, Morgan E Abernathy, Kim-Marie A Dam, Shannon R Esswein, Harry B Gristick, Andrey G Malyutin, Naima G Sharaf, Kathryn E Huey-Tubman, Yu E Lee,[...]. Nature 2020
Christopher O Barnes, Claudia A Jette, Morgan E Abernathy, Kim-Marie A Dam, Shannon R Esswein, Harry B Gristick, Andrey G Malyutin, Naima G Sharaf, Kathryn E Huey-Tubman, Yu E Lee,[...]. Nature 2020
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Antibody resistance of SARS-CoV-2 variants B.1.351 and B.1.1.7.
Pengfei Wang, Manoj S Nair, Lihong Liu, Sho Iketani, Yang Luo, Yicheng Guo, Maple Wang, Jian Yu, Baoshan Zhang, Peter D Kwong,[...]. Nature 2021
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Striking antibody evasion manifested by the Omicron variant of SARS-CoV-2.
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Cross-neutralization of SARS-CoV-2 by a human monoclonal SARS-CoV antibody.
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The Protein Data Bank.
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Clustal W and Clustal X version 2.0.
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ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids.
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Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.