A citation-based method for searching scientific literature

Anna Azvolinsky, Paul G Giresi, Jason D Lieb, Virginia A Zakian. Mol Cell 2009
Times Cited: 224







List of co-cited articles
1486 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The Saccharomyces cerevisiae helicase Rrm3p facilitates replication past nonhistone protein-DNA complexes.
Andreas S Ivessa, Brian A Lenzmeier, Jessica B Bessler, Lara K Goudsouzian, Sandra L Schnakenberg, Virginia A Zakian. Mol Cell 2003
309
40




Topoisomerase I suppresses genomic instability by preventing interference between replication and transcription.
Sandie Tuduri, Laure Crabbé, Chiara Conti, Hélène Tourrière, Heidi Holtgreve-Grez, Anna Jauch, Véronique Pantesco, John De Vos, Aubin Thomas, Charles Theillet,[...]. Nat Cell Biol 2009
344
27

Identification of early replicating fragile sites that contribute to genome instability.
Jacqueline H Barlow, Robert B Faryabi, Elsa Callén, Nancy Wong, Amy Malhowski, Hua Tang Chen, Gustavo Gutierrez-Cruz, Hong-Wei Sun, Peter McKinnon, George Wright,[...]. Cell 2013
268
25




Pif1 family helicases suppress genome instability at G-quadruplex motifs.
Katrin Paeschke, Matthew L Bochman, P Daniela Garcia, Petr Cejka, Katherine L Friedman, Stephen C Kowalczykowski, Virginia A Zakian. Nature 2013
312
21

Senataxin associates with replication forks to protect fork integrity across RNA-polymerase-II-transcribed genes.
Amaya Alzu, Rodrigo Bermejo, Martina Begnis, Chiara Lucca, Daniele Piccini, Walter Carotenuto, Marco Saponaro, Alessandra Brambati, Andrea Cocito, Marco Foiani,[...]. Cell 2012
160
20

The S. cerevisiae Rrm3p DNA helicase moves with the replication fork and affects replication of all yeast chromosomes.
Anna Azvolinsky, Stephen Dunaway, Jorge Z Torres, Jessica B Bessler, Virginia A Zakian. Genes Dev 2006
126
20

R loops: from transcription byproducts to threats to genome stability.
Andrés Aguilera, Tatiana García-Muse. Mol Cell 2012
610
19


R-loop-mediated genomic instability is caused by impairment of replication fork progression.
Wenjian Gan, Zhishuang Guan, Jie Liu, Ting Gui, Keng Shen, James L Manley, Xialu Li. Genes Dev 2011
271
19

Co-directional replication-transcription conflicts lead to replication restart.
Houra Merrikh, Cristina Machón, William H Grainger, Alan D Grossman, Panos Soultanas. Nature 2011
116
18

Systematic identification of fragile sites via genome-wide location analysis of gamma-H2AX.
Rachel K Szilard, Pierre-Etienne Jacques, Louise Laramée, Benjamin Cheng, Sarah Galicia, Alain R Bataille, ManTek Yeung, Megan Mendez, Maxime Bergeron, François Robert,[...]. Nat Struct Mol Biol 2010
148
18

Saccharomyces Rrm3p, a 5' to 3' DNA helicase that promotes replication fork progression through telomeric and subtelomeric DNA.
Andreas S Ivessa, Jin-Qiu Zhou, Vince P Schulz, Ellen K Monson, Virginia A Zakian. Genes Dev 2002
218
18

DNA replication through hard-to-replicate sites, including both highly transcribed RNA Pol II and Pol III genes, requires the S. pombe Pfh1 helicase.
Nasim Sabouri, Karin R McDonald, Christopher J Webb, Ileana M Cristea, Virginia A Zakian. Genes Dev 2012
77
22

PIF1 family DNA helicases suppress R-loop mediated genome instability at tRNA genes.
Phong Lan Thao Tran, Thomas J Pohl, Chi-Fu Chen, Angela Chan, Sebastian Pott, Virginia A Zakian. Nat Commun 2017
69
24

Linking RNA polymerase backtracking to genome instability in E. coli.
Dipak Dutta, Konstantin Shatalin, Vitaly Epshtein, Max E Gottesman, Evgeny Nudler. Cell 2011
231
16

The replication checkpoint protects fork stability by releasing transcribed genes from nuclear pores.
Rodrigo Bermejo, Thelma Capra, Rachel Jossen, Arianna Colosio, Camilla Frattini, Walter Carotenuto, Andrea Cocito, Ylli Doksani, Hannah Klein, Belén Gómez-González,[...]. Cell 2011
169
16

Transcription-replication conflicts: how they occur and how they are resolved.
Tatiana García-Muse, Andrés Aguilera. Nat Rev Mol Cell Biol 2016
198
15

Pif1-family helicases cooperatively suppress widespread replication-fork arrest at tRNA genes.
Joseph S Osmundson, Jayashree Kumar, Rani Yeung, Duncan J Smith. Nat Struct Mol Biol 2017
47
31

Genome-wide function of THO/TREX in active genes prevents R-loop-dependent replication obstacles.
Belén Gómez-González, María García-Rubio, Rodrigo Bermejo, Hélène Gaillard, Katsuhiko Shirahige, Antonio Marín, Marco Foiani, Andrés Aguilera. EMBO J 2011
150
14

R-loop-mediated genome instability in mRNA cleavage and polyadenylation mutants.
Peter C Stirling, Yujia A Chan, Sean W Minaker, Maria J Aristizabal, Irene Barrett, Payal Sipahimalani, Michael S Kobor, Philip Hieter. Genes Dev 2012
160
14

Replication-transcription conflicts in bacteria.
Houra Merrikh, Yan Zhang, Alan D Grossman, Jue D Wang. Nat Rev Microbiol 2012
127
14


Cell-type-specific replication initiation programs set fragility of the FRA3B fragile site.
Anne Letessier, Gaël A Millot, Stéphane Koundrioukoff, Anne-Marie Lachagès, Nicolas Vogt, R Scott Hansen, Bernard Malfoy, Olivier Brison, Michelle Debatisse. Nature 2011
298
14

Transcription-replication encounters, consequences and genomic instability.
Anne Helmrich, Monica Ballarino, Evgeny Nudler, Laszlo Tora. Nat Struct Mol Biol 2013
184
14

R loops: new modulators of genome dynamics and function.
José M Santos-Pereira, Andrés Aguilera. Nat Rev Genet 2015
420
14


Maintaining genome stability at the replication fork.
Dana Branzei, Marco Foiani. Nat Rev Mol Cell Biol 2010
590
13

Yeast Sen1 helicase protects the genome from transcription-associated instability.
Hannah E Mischo, Belén Gómez-González, Pawel Grzechnik, Ana G Rondón, Wu Wei, Lars Steinmetz, Andrés Aguilera, Nick J Proudfoot. Mol Cell 2011
254
13


Replication termination at eukaryotic chromosomes is mediated by Top2 and occurs at genomic loci containing pausing elements.
Daniele Fachinetti, Rodrigo Bermejo, Andrea Cocito, Simone Minardi, Yuki Katou, Yutaka Kanoh, Katsuhiko Shirahige, Anna Azvolinsky, Virginia A Zakian, Marco Foiani. Mol Cell 2010
113
13

Transcription-coupled nucleotide excision repair factors promote R-loop-induced genome instability.
Julie Sollier, Caroline Townsend Stork, María L García-Rubio, Renee D Paulsen, Andrés Aguilera, Karlene A Cimprich. Mol Cell 2014
322
13

The yeast and human FACT chromatin-reorganizing complexes solve R-loop-mediated transcription-replication conflicts.
Emilia Herrera-Moyano, Xénia Mergui, María L García-Rubio, Sonia Barroso, Andrés Aguilera. Genes Dev 2014
113
13

BRCA1 recruitment to transcriptional pause sites is required for R-loop-driven DNA damage repair.
Elodie Hatchi, Konstantina Skourti-Stathaki, Steffen Ventz, Luca Pinello, Angela Yen, Kinga Kamieniarz-Gdula, Stoil Dimitrov, Shailja Pathania, Kristine M McKinney, Matthew L Eaton,[...]. Mol Cell 2015
245
13

RECQL5 controls transcript elongation and suppresses genome instability associated with transcription stress.
Marco Saponaro, Theodoros Kantidakis, Richard Mitter, Gavin P Kelly, Mark Heron, Hannah Williams, Johannes Söding, Aengus Stewart, Jesper Q Svejstrup. Cell 2014
118
13

Pif1 helicase and Polδ promote recombination-coupled DNA synthesis via bubble migration.
Marenda A Wilson, YoungHo Kwon, Yuanyuan Xu, Woo-Hyun Chung, Peter Chi, Hengyao Niu, Ryan Mayle, Xuefeng Chen, Anna Malkova, Patrick Sung,[...]. Nature 2013
216
13

The yeast Pif1 helicase prevents genomic instability caused by G-quadruplex-forming CEB1 sequences in vivo.
Cyril Ribeyre, Judith Lopes, Jean-Baptiste Boulé, Aurèle Piazza, Aurore Guédin, Virginia A Zakian, Jean-Louis Mergny, Alain Nicolas. PLoS Genet 2009
261
13

Large transcription units unify copy number variants and common fragile sites arising under replication stress.
Thomas E Wilson, Martin F Arlt, So Hae Park, Sountharia Rajendran, Michelle Paulsen, Mats Ljungman, Thomas W Glover. Genome Res 2015
110
13

Replication landscape of the human genome.
Nataliya Petryk, Malik Kahli, Yves d'Aubenton-Carafa, Yan Jaszczyszyn, Yimin Shen, Maud Silvain, Claude Thermes, Chun-Long Chen, Olivier Hyrien. Nat Commun 2016
149
13


Transcription-Replication Conflict Orientation Modulates R-Loop Levels and Activates Distinct DNA Damage Responses.
Stephan Hamperl, Michael J Bocek, Joshua C Saldivar, Tomek Swigut, Karlene A Cimprich. Cell 2017
264
13

The helicases DinG, Rep and UvrD cooperate to promote replication across transcription units in vivo.
Hasna Boubakri, Anne Langlois de Septenville, Enrique Viguera, Bénédicte Michel. EMBO J 2010
173
12



Mechanisms of transcription-replication collisions in bacteria.
Ekaterina V Mirkin, Sergei M Mirkin. Mol Cell Biol 2005
120
12


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.