A citation-based method for searching scientific literature

Griffin M Weber, Shawn N Murphy, Andrew J McMurry, Douglas Macfadden, Daniel J Nigrin, Susanne Churchill, Isaac S Kohane. J Am Med Inform Assoc 2009
Times Cited: 190







List of co-cited articles
422 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Serving the enterprise and beyond with informatics for integrating biology and the bedside (i2b2).
Shawn N Murphy, Griffin Weber, Michael Mendis, Vivian Gainer, Henry C Chueh, Susanne Churchill, Isaac Kohane. J Am Med Inform Assoc 2010
554
41

SHRINE: enabling nationally scalable multi-site disease studies.
Andrew J McMurry, Shawn N Murphy, Douglas MacFadden, Griffin Weber, William W Simons, John Orechia, Jonathan Bickel, Nich Wattanasin, Clint Gilbert, Philip Trevvett,[...]. PLoS One 2013
78
25

Launching PCORnet, a national patient-centered clinical research network.
Rachael L Fleurence, Lesley H Curtis, Robert M Califf, Richard Platt, Joe V Selby, Jeffrey S Brown. J Am Med Inform Assoc 2014
312
20

Observational Health Data Sciences and Informatics (OHDSI): Opportunities for Observational Researchers.
George Hripcsak, Jon D Duke, Nigam H Shah, Christian G Reich, Vojtech Huser, Martijn J Schuemie, Marc A Suchard, Rae Woong Park, Ian Chi Kei Wong, Peter R Rijnbeek,[...]. Stud Health Technol Inform 2015
465
19

STRIDE--An integrated standards-based translational research informatics platform.
Henry J Lowe, Todd A Ferris, Penni M Hernandez, Susan C Weber. AMIA Annu Symp Proc 2009
298
13

A translational engine at the national scale: informatics for integrating biology and the bedside.
Isaac S Kohane, Susanne E Churchill, Shawn N Murphy. J Am Med Inform Assoc 2012
92
13

Accrual to Clinical Trials (ACT): A Clinical and Translational Science Award Consortium Network.
Shyam Visweswaran, Michael J Becich, Vincent S D'Itri, Elaina R Sendro, Douglas MacFadden, Nicholas R Anderson, Karen A Allen, Dipti Ranganathan, Shawn N Murphy, Elaine H Morrato,[...]. JAMIA Open 2018
49
22

A new initiative on precision medicine.
Francis S Collins, Harold Varmus. N Engl J Med 2015
10

The FAIR Guiding Principles for scientific data management and stewardship.
Mark D Wilkinson, Michel Dumontier, I Jsbrand Jan Aalbersberg, Gabrielle Appleton, Myles Axton, Arie Baak, Niklas Blomberg, Jan-Willem Boiten, Luiz Bonino da Silva Santos, Philip E Bourne,[...]. Sci Data 2016
10

PCORnet: turning a dream into reality.
Francis S Collins, Kathy L Hudson, Josephine P Briggs, Michael S Lauer. J Am Med Inform Assoc 2014
109
9

Characterizing treatment pathways at scale using the OHDSI network.
George Hripcsak, Patrick B Ryan, Jon D Duke, Nigam H Shah, Rae Woong Park, Vojtech Huser, Marc A Suchard, Martijn J Schuemie, Frank J DeFalco, Adler Perotte,[...]. Proc Natl Acad Sci U S A 2016
152
9

Validation of electronic medical record-based phenotyping algorithms: results and lessons learned from the eMERGE network.
Katherine M Newton, Peggy L Peissig, Abel Ngo Kho, Suzette J Bielinski, Richard L Berg, Vidhu Choudhary, Melissa Basford, Christopher G Chute, Iftikhar J Kullo, Rongling Li,[...]. J Am Med Inform Assoc 2013
232
8


Scalable Collaborative Infrastructure for a Learning Healthcare System (SCILHS): architecture.
Kenneth D Mandl, Isaac S Kohane, Douglas McFadden, Griffin M Weber, Marc Natter, Joshua Mandel, Sebastian Schneeweiss, Sarah Weiler, Jeffrey G Klann, Jonathan Bickel,[...]. J Am Med Inform Assoc 2014
54
14

Implementation of a deidentified federated data network for population-based cohort discovery.
Nicholas Anderson, Aaron Abend, Aaron Mandel, Estella Geraghty, Davera Gabriel, Rob Wynden, Michael Kamerick, Kent Anderson, Julie Rainwater, Peter Tarczy-Hornoch. J Am Med Inform Assoc 2012
29
24


Practices and perspectives on building integrated data repositories: results from a 2010 CTSA survey.
Sandra L MacKenzie, Matt C Wyatt, Robert Schuff, Jessica D Tenenbaum, Nick Anderson. J Am Med Inform Assoc 2012
42
16

The Electronic Medical Records and Genomics (eMERGE) Network: past, present, and future.
Omri Gottesman, Helena Kuivaniemi, Gerard Tromp, W Andrew Faucett, Rongling Li, Teri A Manolio, Saskia C Sanderson, Joseph Kannry, Randi Zinberg, Melissa A Basford,[...]. Genet Med 2013
421
7


An i2b2-based, generalizable, open source, self-scaling chronic disease registry.
Marc D Natter, Justin Quan, David M Ortiz, Athos Bousvaros, Norman T Ilowite, Christi J Inman, Keith Marsolo, Andrew J McMurry, Christy I Sandborg, Laura E Schanberg,[...]. J Am Med Inform Assoc 2013
55
10


Advancing the science for active surveillance: rationale and design for the Observational Medical Outcomes Partnership.
Paul E Stang, Patrick B Ryan, Judith A Racoosin, J Marc Overhage, Abraham G Hartzema, Christian Reich, Emily Welebob, Thomas Scarnecchia, Janet Woodcock. Ann Intern Med 2010
237
6

Secondary use of clinical data: the Vanderbilt approach.
Ioana Danciu, James D Cowan, Melissa Basford, Xiaoming Wang, Alexander Saip, Susan Osgood, Jana Shirey-Rice, Jacqueline Kirby, Paul A Harris. J Biomed Inform 2014
133
6

Mining electronic health records: towards better research applications and clinical care.
Peter B Jensen, Lars J Jensen, Søren Brunak. Nat Rev Genet 2012
592
6

Using a Federated Network of Real-World Data to Optimize Clinical Trials Operations.
Umit Topaloglu, Matvey B Palchuk. JCO Clin Cancer Inform 2018
61
9

International electronic health record-derived COVID-19 clinical course profiles: the 4CE consortium.
Gabriel A Brat, Griffin M Weber, Nils Gehlenborg, Paul Avillach, Nathan P Palmer, Luca Chiovato, James Cimino, Lemuel R Waitman, Gilbert S Omenn, Alberto Malovini,[...]. NPJ Digit Med 2020
71
8

Patient-powered research networks: building capacity for conducting patient-centered clinical outcomes research.
Sarah E Daugherty, Sarita Wahba, Rachael Fleurence. J Am Med Inform Assoc 2014
47
10

Building a robust, scalable and standards-driven infrastructure for secondary use of EHR data: the SHARPn project.
Susan Rea, Jyotishman Pathak, Guergana Savova, Thomas A Oniki, Les Westberg, Calvin E Beebe, Cui Tao, Craig G Parker, Peter J Haug, Stanley M Huff,[...]. J Biomed Inform 2012
113
5

Electronic health records: new opportunities for clinical research.
P Coorevits, M Sundgren, G O Klein, A Bahr, B Claerhout, C Daniel, M Dugas, D Dupont, A Schmidt, P Singleton,[...]. J Intern Med 2013
142
5

Caveats for the use of operational electronic health record data in comparative effectiveness research.
William R Hersh, Mark G Weiner, Peter J Embi, Judith R Logan, Philip R O Payne, Elmer V Bernstam, Harold P Lehmann, George Hripcsak, Timothy H Hartzog, James J Cimino,[...]. Med Care 2013
296
5


Integration of clinical and genetic data in the i2b2 architecture.
Shawn N Murphy, Michael E Mendis, David A Berkowitz, Isaac Kohane, Henry C Chueh. AMIA Annu Symp Proc 2006
79
6

Using electronic health records for clinical research: the case of the EHR4CR project.
Georges De Moor, Mats Sundgren, Dipak Kalra, Andreas Schmidt, Martin Dugas, Brecht Claerhout, Töresin Karakoyun, Christian Ohmann, Pierre-Yves Lastic, Nadir Ammour,[...]. J Biomed Inform 2015
84
5


Validation of a common data model for active safety surveillance research.
J Marc Overhage, Patrick B Ryan, Christian G Reich, Abraham G Hartzema, Paul E Stang. J Am Med Inform Assoc 2012
234
5

The Enterprise Data Trust at Mayo Clinic: a semantically integrated warehouse of biomedical data.
Christopher G Chute, Scott A Beck, Thomas B Fisk, David N Mohr. J Am Med Inform Assoc 2010
127
5

Methodology of integration of a clinical data warehouse with a clinical information system: the HEGP case.
Eric Zapletal, Nicolas Rodon, Natalia Grabar, Patrice Degoulet. Stud Health Technol Inform 2010
40
12

Data interchange using i2b2.
Jeffrey G Klann, Aaron Abend, Vijay A Raghavan, Kenneth D Mandl, Shawn N Murphy. J Am Med Inform Assoc 2016
38
13

tranSMART: An Open Source Knowledge Management and High Content Data Analytics Platform.
Elisabeth Scheufele, Dina Aronzon, Robert Coopersmith, Michael T McDuffie, Manish Kapoor, Christopher A Uhrich, Jean E Avitabile, Jinlei Liu, Dan Housman, Matvey B Palchuk. AMIA Jt Summits Transl Sci Proc 2014
35
14

Automated population of an i2b2 clinical data warehouse from an openEHR-based data repository.
Birger Haarbrandt, Erik Tute, Michael Marschollek. J Biomed Inform 2016
19
26

Instrumenting the health care enterprise for discovery research in the genomic era.
Shawn Murphy, Susanne Churchill, Lynn Bry, Henry Chueh, Scott Weiss, Ross Lazarus, Qing Zeng, Anil Dubey, Vivian Gainer, Michael Mendis,[...]. Genome Res 2009
97
4

Using electronic medical records to enable large-scale studies in psychiatry: treatment resistant depression as a model.
R H Perlis, D V Iosifescu, V M Castro, S N Murphy, V S Gainer, J Minnier, T Cai, S Goryachev, Q Zeng, P J Gallagher,[...]. Psychol Med 2012
109
4

Mayo clinical Text Analysis and Knowledge Extraction System (cTAKES): architecture, component evaluation and applications.
Guergana K Savova, James J Masanz, Philip V Ogren, Jiaping Zheng, Sunghwan Sohn, Karin C Kipper-Schuler, Christopher G Chute. J Am Med Inform Assoc 2010
776
4

Electronic medical records for genetic research: results of the eMERGE consortium.
Abel N Kho, Jennifer A Pacheco, Peggy L Peissig, Luke Rasmussen, Katherine M Newton, Noah Weston, Paul K Crane, Jyotishman Pathak, Christopher G Chute, Suzette J Bielinski,[...]. Sci Transl Med 2011
232
4

Calculating the benefits of a Research Patient Data Repository.
Ruth Nalichowski, Diane Keogh, Henry C Chueh, Shawn N Murphy. AMIA Annu Symp Proc 2006
165
4

Evidence-based medicine in the EMR era.
Jennifer Frankovich, Christopher A Longhurst, Scott M Sutherland. N Engl J Med 2011
109
4

Query Health: standards-based, cross-platform population health surveillance.
Jeffrey G Klann, Michael D Buck, Jeffrey Brown, Marc Hadley, Richard Elmore, Griffin M Weber, Shawn N Murphy. J Am Med Inform Assoc 2014
27
14

Next-generation phenotyping of electronic health records.
George Hripcsak, David J Albers. J Am Med Inform Assoc 2013
331
4


R engine cell: integrating R into the i2b2 software infrastructure.
Daniele Segagni, Fulvia Ferrazzi, Cristiana Larizza, Valentina Tibollo, Carlo Napolitano, Silvia G Priori, Riccardo Bellazzi. J Am Med Inform Assoc 2011
16
25


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.