A citation-based method for searching scientific literature

Anthony Holtmaat, Tobias Bonhoeffer, David K Chow, Jyoti Chuckowree, Vincenzo De Paola, Sonja B Hofer, Mark Hübener, Tara Keck, Graham Knott, Wei-Chung A Lee, Ricardo Mostany, Tom D Mrsic-Flogel, Elly Nedivi, Carlos Portera-Cailliau, Karel Svoboda, Joshua T Trachtenberg, Linda Wilbrecht. Nat Protoc 2009
Times Cited: 539







List of co-cited articles
704 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Imaging neuronal subsets in transgenic mice expressing multiple spectral variants of GFP.
G Feng, R H Mellor, M Bernstein, C Keller-Peck, Q T Nguyen, M Wallace, J M Nerbonne, J W Lichtman, J R Sanes. Neuron 2000
16

Ultrasensitive fluorescent proteins for imaging neuronal activity.
Tsai-Wen Chen, Trevor J Wardill, Yi Sun, Stefan R Pulver, Sabine L Renninger, Amy Baohan, Eric R Schreiter, Rex A Kerr, Michael B Orger, Vivek Jayaraman,[...]. Nature 2013
16

Thinned-skull cranial window technique for long-term imaging of the cortex in live mice.
Guang Yang, Feng Pan, Christopher N Parkhurst, Jaime Grutzendler, Wen-Biao Gan. Nat Protoc 2010
253
14

Fiji: an open-source platform for biological-image analysis.
Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid,[...]. Nat Methods 2012
13


Deep tissue two-photon microscopy.
Fritjof Helmchen, Winfried Denk. Nat Methods 2005
12

Rapid formation and selective stabilization of synapses for enduring motor memories.
Tonghui Xu, Xinzhu Yu, Andrew J Perlik, Willie F Tobin, Jonathan A Zweig, Kelly Tennant, Theresa Jones, Yi Zuo. Nature 2009
660
10

Two-photon laser scanning fluorescence microscopy.
W Denk, J H Strickler, W W Webb. Science 1990
10

In vivo three-photon microscopy of subcortical structures within an intact mouse brain.
Nicholas G Horton, Ke Wang, Demirhan Kobat, Catharine G Clark, Frank W Wise, Chris B Schaffer, Chris Xu. Nat Photonics 2013
484
10

Chronic optical access through a polished and reinforced thinned skull.
Patrick J Drew, Andy Y Shih, Jonathan D Driscoll, Per Magne Knutsen, Pablo Blinder, Dimitrios Davalos, Katerina Akassoglou, Philbert S Tsai, David Kleinfeld. Nat Methods 2010
236
10

Removable cranial windows for long-term imaging in awake mice.
Glenn J Goldey, Demetris K Roumis, Lindsey L Glickfeld, Aaron M Kerlin, R Clay Reid, Vincent Bonin, Dorothy P Schafer, Mark L Andermann. Nat Protoc 2014
135
10

ScanImage: flexible software for operating laser scanning microscopes.
Thomas A Pologruto, Bernardo L Sabatini, Karel Svoboda. Biomed Eng Online 2003
679
9

Thy1-GCaMP6 transgenic mice for neuronal population imaging in vivo.
Hod Dana, Tsai-Wen Chen, Amy Hu, Brenda C Shields, Caiying Guo, Loren L Looger, Douglas S Kim, Karel Svoboda. PLoS One 2014
208
9

A large field of view two-photon mesoscope with subcellular resolution for in vivo imaging.
Nicholas James Sofroniew, Daniel Flickinger, Jonathan King, Karel Svoboda. Elife 2016
208
9

Imaging large-scale neural activity with cellular resolution in awake, mobile mice.
Daniel A Dombeck, Anton N Khabbaz, Forrest Collman, Thomas L Adelman, David W Tank. Neuron 2007
607
9


Resting microglial cells are highly dynamic surveillants of brain parenchyma in vivo.
Axel Nimmerjahn, Frank Kirchhoff, Fritjof Helmchen. Science 2005
9

Long-Term Optical Access to an Estimated One Million Neurons in the Live Mouse Cortex.
Tony Hyun Kim, Yanping Zhang, Jérôme Lecoq, Juergen C Jung, Jane Li, Hongkui Zeng, Cristopher M Niell, Mark J Schnitzer. Cell Rep 2016
88
10

A craniotomy surgery procedure for chronic brain imaging.
Ricardo Mostany, Carlos Portera-Cailliau. J Vis Exp 2008
107
8


Analysis of fractalkine receptor CX(3)CR1 function by targeted deletion and green fluorescent protein reporter gene insertion.
S Jung, J Aliberti, P Graemmel, M J Sunshine, G W Kreutzberg, A Sher, D R Littman. Mol Cell Biol 2000
8

A soft, transparent, freely accessible cranial window for chronic imaging and electrophysiology.
Chaejeong Heo, Hyejin Park, Yong-Tae Kim, Eunha Baeg, Yong Ho Kim, Seong-Gi Kim, Minah Suh. Sci Rep 2016
49
16


Spine growth precedes synapse formation in the adult neocortex in vivo.
Graham W Knott, Anthony Holtmaat, Linda Wilbrecht, Egbert Welker, Karel Svoboda. Nat Neurosci 2006
381
7

Miniaturized integration of a fluorescence microscope.
Kunal K Ghosh, Laurie D Burns, Eric D Cocker, Axel Nimmerjahn, Yaniv Ziv, Abbas El Gamal, Mark J Schnitzer. Nat Methods 2011
435
7

ATP mediates rapid microglial response to local brain injury in vivo.
Dimitrios Davalos, Jaime Grutzendler, Guang Yang, Jiyun V Kim, Yi Zuo, Steffen Jung, Dan R Littman, Michael L Dustin, Wen-Biao Gan. Nat Neurosci 2005
7

Sleep promotes branch-specific formation of dendritic spines after learning.
Guang Yang, Cora Sau Wan Lai, Joseph Cichon, Lei Ma, Wei Li, Wen-Biao Gan. Science 2014
285
6

The organization of the forelimb representation of the C57BL/6 mouse motor cortex as defined by intracortical microstimulation and cytoarchitecture.
Kelly A Tennant, Deanna L Adkins, Nicole A Donlan, Aaron L Asay, Nagheme Thomas, Jeffrey A Kleim, Theresa A Jones. Cereb Cortex 2011
210
6

Long-term dendritic spine stability in the adult cortex.
Jaime Grutzendler, Narayanan Kasthuri, Wen-Biao Gan. Nature 2002
782
6

Long-term in vivo imaging of experience-dependent synaptic plasticity in adult cortex.
Joshua T Trachtenberg, Brian E Chen, Graham W Knott, Guoping Feng, Joshua R Sanes, Egbert Welker, Karel Svoboda. Nature 2002
6

Experience-dependent structural synaptic plasticity in the mammalian brain.
Anthony Holtmaat, Karel Svoboda. Nat Rev Neurosci 2009
6

A Cellular Resolution Map of Barrel Cortex Activity during Tactile Behavior.
Simon P Peron, Jeremy Freeman, Vijay Iyer, Caiying Guo, Karel Svoboda. Neuron 2015
143
6

Comparison of intravital thinned skull and cranial window approaches to study CNS immunobiology in the mouse cortex.
R Dixon Dorand, Deborah S Barkauskas, Teresa A Evans, Agne Petrosiute, Alex Y Huang. Intravital 2014
43
13

NIH Image to ImageJ: 25 years of image analysis.
Caroline A Schneider, Wayne S Rasband, Kevin W Eliceiri. Nat Methods 2012
6

In vivo three-photon imaging of activity of GCaMP6-labeled neurons deep in intact mouse brain.
Dimitre G Ouzounov, Tianyu Wang, Mengran Wang, Danielle D Feng, Nicholas G Horton, Jean C Cruz-Hernández, Yu-Ting Cheng, Jacob Reimer, Andreas S Tolias, Nozomi Nishimura,[...]. Nat Methods 2017
175
6

Capillary pericytes regulate cerebral blood flow in health and disease.
Catherine N Hall, Clare Reynell, Bodil Gesslein, Nicola B Hamilton, Anusha Mishra, Brad A Sutherland, Fergus M O'Farrell, Alastair M Buchan, Martin Lauritzen, David Attwell. Nature 2014
861
6

Two-photon microscopy as a tool to study blood flow and neurovascular coupling in the rodent brain.
Andy Y Shih, Jonathan D Driscoll, Patrick J Drew, Nozomi Nishimura, Chris B Schaffer, David Kleinfeld. J Cereb Blood Flow Metab 2012
220
6

Labelling and optical erasure of synaptic memory traces in the motor cortex.
Akiko Hayashi-Takagi, Sho Yagishita, Mayumi Nakamura, Fukutoshi Shirai, Yi I Wu, Amanda L Loshbaugh, Brian Kuhlman, Klaus M Hahn, Haruo Kasai. Nature 2015
298
5

Bidirectional control of CNS capillary diameter by pericytes.
Claire M Peppiatt, Clare Howarth, Peter Mobbs, David Attwell. Nature 2006
659
5


In vivo imaging of neural activity.
Weijian Yang, Rafael Yuste. Nat Methods 2017
152
5


Experience-dependent and cell-type-specific spine growth in the neocortex.
Anthony Holtmaat, Linda Wilbrecht, Graham W Knott, Egbert Welker, Karel Svoboda. Nature 2006
425
5

In vivo measurement of afferent activity with axon-specific calcium imaging.
Gerard Joey Broussard, Yajie Liang, Marina Fridman, Elizabeth K Unger, Guanghan Meng, Xian Xiao, Na Ji, Leopoldo Petreanu, Lin Tian. Nat Neurosci 2018
38
13

Simultaneous Denoising, Deconvolution, and Demixing of Calcium Imaging Data.
Eftychios A Pnevmatikakis, Daniel Soudry, Yuanjun Gao, Timothy A Machado, Josh Merel, David Pfau, Thomas Reardon, Yu Mu, Clay Lacefield, Weijian Yang,[...]. Neuron 2016
306
5

An optimized fluorescent probe for visualizing glutamate neurotransmission.
Jonathan S Marvin, Bart G Borghuis, Lin Tian, Joseph Cichon, Mark T Harnett, Jasper Akerboom, Andrew Gordus, Sabine L Renninger, Tsai-Wen Chen, Cornelia I Bargmann,[...]. Nat Methods 2013
443
5

Subtype-specific plasticity of inhibitory circuits in motor cortex during motor learning.
Simon X Chen, An Na Kim, Andrew J Peters, Takaki Komiyama. Nat Neurosci 2015
139
5

Wide field-of-view, multi-region, two-photon imaging of neuronal activity in the mammalian brain.
Jeffrey N Stirman, Ikuko T Smith, Michael W Kudenov, Spencer L Smith. Nat Biotechnol 2016
122
5

Intravital imaging.
Mikael J Pittet, Ralph Weissleder. Cell 2011
291
5

Imaging windows for long-term intravital imaging: General overview and technical insights.
Maria Alieva, Laila Ritsma, Randy J Giedt, Ralph Weissleder, Jacco van Rheenen. Intravital 2014
82
6


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.