A citation-based method for searching scientific literature

John K Frederiksen, Joseph A Piccirilli. Methods 2009
Times Cited: 46







List of co-cited articles
658 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



Comparison of the hammerhead cleavage reactions stimulated by monovalent and divalent cations.
J L O'Rear, S Wang, A L Feig, L Beigelman, O C Uhlenbeck, D Herschlag. RNA 2001
151
21

A general two-metal-ion mechanism for catalytic RNA.
T A Steitz, J A Steitz. Proc Natl Acad Sci U S A 1993
875
19

Crystal structure of a self-spliced group II intron.
Navtej Toor, Kevin S Keating, Sean D Taylor, Anna Marie Pyle. Science 2008
338
19

Controlling ribozyme activity by metal ions.
Joachim Schnabl, Roland K O Sigel. Curr Opin Chem Biol 2010
62
19

A 1.9 A crystal structure of the HDV ribozyme precleavage suggests both Lewis acid and general acid mechanisms contribute to phosphodiester cleavage.
Jui-Hui Chen, Rieko Yajima, Durga M Chadalavada, Elaine Chase, Philip C Bevilacqua, Barbara L Golden. Biochemistry 2010
84
19

General acid catalysis by the hepatitis delta virus ribozyme.
Subha R Das, Joseph A Piccirilli. Nat Chem Biol 2005
174
19


Ions and RNA folding.
David E Draper, Dan Grilley, Ana Maria Soto. Annu Rev Biophys Biomol Struct 2005
327
17

Functional identification of ligands for a catalytic metal ion in group I introns.
Marcello Forconi, Jihee Lee, Jungjoon K Lee, Joseph A Piccirilli, Daniel Herschlag. Biochemistry 2008
28
28


Direct measurement of a pK(a) near neutrality for the catalytic cytosine in the genomic HDV ribozyme using Raman crystallography.
Bo Gong, Jui-Hui Chen, Elaine Chase, Durga M Chadalavada, Rieko Yajima, Barbara L Golden, Philip C Bevilacqua, Paul R Carey. J Am Chem Soc 2007
79
17

General acid-base catalysis in the mechanism of a hepatitis delta virus ribozyme.
S Nakano, D M Chadalavada, P C Bevilacqua. Science 2000
328
17


Metal ion binding to catalytic RNA molecules.
Victoria J DeRose. Curr Opin Struct Biol 2003
98
17


Three metal ions at the active site of the Tetrahymena group I ribozyme.
S o Shan, A Yoshida, S Sun, J A Piccirilli, D Herschlag. Proc Natl Acad Sci U S A 1999
145
15

Metal ion catalysis during splicing of premessenger RNA.
E J Sontheimer, S Sun, J A Piccirilli. Nature 1997
123
15




Mapping metal-binding sites in the catalytic domain of bacterial RNase P RNA.
Alexei V Kazantsev, Angelika A Krivenko, Norman R Pace. RNA 2009
37
16



The catalytic diversity of RNAs.
Martha J Fedor, James R Williamson. Nat Rev Mol Cell Biol 2005
211
13

Metal ion binding sites in a group II intron core.
R K Sigel, A Vaidya, A M Pyle. Nat Struct Biol 2000
101
13


Metal ion catalysis in the Tetrahymena ribozyme reaction.
J A Piccirilli, J S Vyle, M H Caruthers, T R Cech. Nature 1993
302
13

Defining the catalytic metal ion interactions in the Tetrahymena ribozyme reaction.
S Shan , A V Kravchuk, J A Piccirilli, D Herschlag. Biochemistry 2001
108
13

The hammerhead, hairpin and VS ribozymes are catalytically proficient in monovalent cations alone.
J B Murray, A A Seyhan, N G Walter, J M Burke, W G Scott. Chem Biol 1998
344
13



Identification of the catalytic Mg²⁺ ion in the hepatitis delta virus ribozyme.
Ji Chen, Abir Ganguly, Zulaika Miswan, Sharon Hammes-Schiffer, Philip C Bevilacqua, Barbara L Golden. Biochemistry 2013
32
18

Crystal structure of a bacterial ribonuclease P RNA.
Alexei V Kazantsev, Angelika A Krivenko, Daniel J Harrington, Stephen R Holbrook, Paul D Adams, Norman R Pace. Proc Natl Acad Sci U S A 2005
155
10

The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme.
C Guerrier-Takada, K Gardiner, T Marsh, N Pace, S Altman. Cell 1983
10





Crystal structure of the RNA component of bacterial ribonuclease P.
Alfredo Torres-Larios, Kerren K Swinger, Andrey S Krasilnikov, Tao Pan, Alfonso Mondragón. Nature 2005
158
10

NMR and XAS reveal an inner-sphere metal binding site in the P4 helix of the metallo-ribozyme ribonuclease P.
Kristin S Koutmou, Anette Casiano-Negroni, Melissa M Getz, Samuel Pazicni, Andrew J Andrews, James E Penner-Hahn, Hashim M Al-Hashimi, Carol A Fierke. Proc Natl Acad Sci U S A 2010
15
33

Role of metal ions in the tetraloop-receptor complex as analyzed by NMR.
Jared H Davis, Trenton R Foster, Marco Tonelli, Samuel E Butcher. RNA 2007
43
11



A second divalent metal ion in the group II intron reaction center.
Peter M Gordon, Robert Fong, Joseph A Piccirilli. Chem Biol 2007
52
10

Atomic level architecture of group I introns revealed.
Quentin Vicens, Thomas R Cech. Trends Biochem Sci 2006
115
10

The structural basis of ribosome activity in peptide bond synthesis.
P Nissen, J Hansen, N Ban, P B Moore, T A Steitz. Science 2000
10


Nucleobase catalysis in ribozyme mechanism.
Philip C Bevilacqua, Rieko Yajima. Curr Opin Chem Biol 2006
88
10

Direct pK(a) measurement of the active-site cytosine in a genomic hepatitis delta virus ribozyme.
A Lupták, A R Ferré-D'Amaré, K Zhou, K W Zilm, J A Doudna. J Am Chem Soc 2001
77
10


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.