A citation-based method for searching scientific literature

Harlan S Robins, Paulo V Campregher, Santosh K Srivastava, Abigail Wacher, Cameron J Turtle, Orsalem Kahsai, Stanley R Riddell, Edus H Warren, Christopher S Carlson. Blood 2009
Times Cited: 736







List of co-cited articles
744 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Using synthetic templates to design an unbiased multiplex PCR assay.
Christopher S Carlson, Ryan O Emerson, Anna M Sherwood, Cindy Desmarais, Moon-Wook Chung, Joseph M Parsons, Michelle S Steen, Marissa A LaMadrid-Herrmannsfeldt, David W Williamson, Robert J Livingston,[...]. Nat Commun 2013
342
30

Diversity and clonal selection in the human T-cell repertoire.
Qian Qi, Yi Liu, Yong Cheng, Jacob Glanville, David Zhang, Ji-Yeun Lee, Richard A Olshen, Cornelia M Weyand, Scott D Boyd, Jörg J Goronzy. Proc Natl Acad Sci U S A 2014
370
16

MiXCR: software for comprehensive adaptive immunity profiling.
Dmitriy A Bolotin, Stanislav Poslavsky, Igor Mitrophanov, Mikhail Shugay, Ilgar Z Mamedov, Ekaterina V Putintseva, Dmitriy M Chudakov. Nat Methods 2015
672
14

Immunosequencing identifies signatures of cytomegalovirus exposure history and HLA-mediated effects on the T cell repertoire.
Ryan O Emerson, William S DeWitt, Marissa Vignali, Jenna Gravley, Joyce K Hu, Edward J Osborne, Cindy Desmarais, Mark Klinger, Christopher S Carlson, John A Hansen,[...]. Nat Genet 2017
201
14

Ultra-sensitive detection of rare T cell clones.
Harlan Robins, Cindy Desmarais, Jessica Matthis, Robert Livingston, Jessica Andriesen, Helena Reijonen, Christopher Carlson, Gerold Nepom, Cassian Yee, Karen Cerosaletti. J Immunol Methods 2012
124
13

PD-1 blockade induces responses by inhibiting adaptive immune resistance.
Paul C Tumeh, Christina L Harview, Jennifer H Yearley, I Peter Shintaku, Emma J M Taylor, Lidia Robert, Bartosz Chmielowski, Marko Spasic, Gina Henry, Voicu Ciobanu,[...]. Nature 2014
13

Overlap and effective size of the human CD8+ T cell receptor repertoire.
Harlan S Robins, Santosh K Srivastava, Paulo V Campregher, Cameron J Turtle, Jessica Andriesen, Stanley R Riddell, Christopher S Carlson, Edus H Warren. Sci Transl Med 2010
269
12


Magnitude and Dynamics of the T-Cell Response to SARS-CoV-2 Infection at Both Individual and Population Levels.
Thomas M Snyder, Rachel M Gittelman, Mark Klinger, Damon H May, Edward J Osborne, Ruth Taniguchi, H Jabran Zahid, Ian M Kaplan, Jennifer N Dines, Matthew T Noakes,[...]. medRxiv 2020
85
14

A direct estimate of the human alphabeta T cell receptor diversity.
T P Arstila, A Casrouge, V Baron, J Even, J Kanellopoulos, P Kourilsky. Science 1999
644
10

McPAS-TCR: a manually curated catalogue of pathology-associated T cell receptor sequences.
Nili Tickotsky, Tal Sagiv, Jaime Prilusky, Eric Shifrut, Nir Friedman. Bioinformatics 2017
114
9

VDJdb: a curated database of T-cell receptor sequences with known antigen specificity.
Mikhail Shugay, Dmitriy V Bagaev, Ivan V Zvyagin, Renske M Vroomans, Jeremy Chase Crawford, Garry Dolton, Ekaterina A Komech, Anastasiya L Sycheva, Anna E Koneva, Evgeniy S Egorov,[...]. Nucleic Acids Res 2018
169
9

Exhaustive T-cell repertoire sequencing of human peripheral blood samples reveals signatures of antigen selection and a directly measured repertoire size of at least 1 million clonotypes.
René L Warren, J Douglas Freeman, Thomas Zeng, Gina Choe, Sarah Munro, Richard Moore, John R Webb, Robert A Holt. Genome Res 2011
234
9

Identifying specificity groups in the T cell receptor repertoire.
Jacob Glanville, Huang Huang, Allison Nau, Olivia Hatton, Lisa E Wagar, Florian Rubelt, Xuhuai Ji, Arnold Han, Sheri M Krams, Christina Pettus,[...]. Nature 2017
424
9

VDJdb in 2019: database extension, new analysis infrastructure and a T-cell receptor motif compendium.
Dmitry V Bagaev, Renske M A Vroomans, Jerome Samir, Ulrik Stervbo, Cristina Rius, Garry Dolton, Alexander Greenshields-Watson, Meriem Attaf, Evgeny S Egorov, Ivan V Zvyagin,[...]. Nucleic Acids Res 2020
105
9

Overview of methodologies for T-cell receptor repertoire analysis.
Elisa Rosati, C Marie Dowds, Evaggelia Liaskou, Eva Kristine Klemsdal Henriksen, Tom H Karlsen, Andre Franke. BMC Biotechnol 2017
124
8

Linking T-cell receptor sequence to functional phenotype at the single-cell level.
Arnold Han, Jacob Glanville, Leo Hansmann, Mark M Davis. Nat Biotechnol 2014
320
8

Bystander CD8+ T cells are abundant and phenotypically distinct in human tumour infiltrates.
Yannick Simoni, Etienne Becht, Michael Fehlings, Chiew Yee Loh, Si-Lin Koo, Karen Wei Weng Teng, Joe Poh Sheng Yeong, Rahul Nahar, Tong Zhang, Hassen Kared,[...]. Nature 2018
551
8

Analyzing the Mycobacterium tuberculosis immune response by T-cell receptor clustering with GLIPH2 and genome-wide antigen screening.
Huang Huang, Chunlin Wang, Florian Rubelt, Thomas J Scriba, Mark M Davis. Nat Biotechnol 2020
87
9

Precise tracking of vaccine-responding T cell clones reveals convergent and personalized response in identical twins.
Mikhail V Pogorelyy, Anastasia A Minervina, Maximilian Puelma Touzel, Anastasiia L Sycheva, Ekaterina A Komech, Elena I Kovalenko, Galina G Karganova, Evgeniy S Egorov, Alexander Yu Komkov, Dmitriy M Chudakov,[...]. Proc Natl Acad Sci U S A 2018
46
15

Genesis of the αβ T-cell receptor.
Thomas Dupic, Quentin Marcou, Aleksandra M Walczak, Thierry Mora. PLoS Comput Biol 2019
35
20

Human T cell receptor occurrence patterns encode immune history, genetic background, and receptor specificity.
William S DeWitt, Anajane Smith, Gary Schoch, John A Hansen, Frederick A Matsen, Philip Bradley. Elife 2018
60
11

Quantifiable predictive features define epitope-specific T cell receptor repertoires.
Pradyot Dash, Andrew J Fiore-Gartland, Tomer Hertz, George C Wang, Shalini Sharma, Aisha Souquette, Jeremy Chase Crawford, E Bridie Clemens, Thi H O Nguyen, Katherine Kedzierska,[...]. Nature 2017
319
7

The Immune Epitope Database (IEDB): 2018 update.
Randi Vita, Swapnil Mahajan, James A Overton, Sandeep Kumar Dhanda, Sheridan Martini, Jason R Cantrell, Daniel K Wheeler, Alessandro Sette, Bjoern Peters. Nucleic Acids Res 2019
575
7

The many important facets of T-cell repertoire diversity.
Janko Nikolich-Zugich, Mark K Slifka, Ilhem Messaoudi. Nat Rev Immunol 2004
405
7

Why must T cells be cross-reactive?
Andrew K Sewell. Nat Rev Immunol 2012
271
7

Benchmarking of T cell receptor repertoire profiling methods reveals large systematic biases.
Pierre Barennes, Valentin Quiniou, Mikhail Shugay, Evgeniy S Egorov, Alexey N Davydov, Dmitriy M Chudakov, Imran Uddin, Mazlina Ismail, Theres Oakes, Benny Chain,[...]. Nat Biotechnol 2021
33
21

Multiplex Identification of Antigen-Specific T Cell Receptors Using a Combination of Immune Assays and Immune Receptor Sequencing.
Mark Klinger, Francois Pepin, Jen Wilkins, Thomas Asbury, Tobias Wittkop, Jianbiao Zheng, Martin Moorhead, Malek Faham. PLoS One 2015
58
12

Determinants governing T cell receptor α/β-chain pairing in repertoire formation of identical twins.
Hidetaka Tanno, Timothy M Gould, Jonathan R McDaniel, Wenqiang Cao, Yuri Tanno, Russell E Durrett, Daechan Park, Steven J Cate, William H Hildebrand, Cornelia L Dekker,[...]. Proc Natl Acad Sci U S A 2020
20
30

T-cell receptor repertoires share a restricted set of public and abundant CDR3 sequences that are associated with self-related immunity.
Asaf Madi, Eric Shifrut, Shlomit Reich-Zeliger, Hilah Gal, Katharine Best, Wilfred Ndifon, Benjamin Chain, Irun R Cohen, Nir Friedman. Genome Res 2014
107
6

Mutations Associated with Acquired Resistance to PD-1 Blockade in Melanoma.
Jesse M Zaretsky, Angel Garcia-Diaz, Daniel S Shin, Helena Escuin-Ordinas, Willy Hugo, Siwen Hu-Lieskovan, Davis Y Torrejon, Gabriel Abril-Rodriguez, Salemiz Sandoval, Lucas Barthly,[...]. N Engl J Med 2016
6

Safety, activity, and immune correlates of anti-PD-1 antibody in cancer.
Suzanne L Topalian, F Stephen Hodi, Julie R Brahmer, Scott N Gettinger, David C Smith, David F McDermott, John D Powderly, Richard D Carvajal, Jeffrey A Sosman, Michael B Atkins,[...]. N Engl J Med 2012
6

Mismatch repair deficiency predicts response of solid tumors to PD-1 blockade.
Dung T Le, Jennifer N Durham, Kellie N Smith, Hao Wang, Bjarne R Bartlett, Laveet K Aulakh, Steve Lu, Holly Kemberling, Cara Wilt, Brandon S Luber,[...]. Science 2017
6

Profiling the T-cell receptor beta-chain repertoire by massively parallel sequencing.
J Douglas Freeman, René L Warren, John R Webb, Brad H Nelson, Robert A Holt. Genome Res 2009
268
6

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
6

CTLA4 blockade broadens the peripheral T-cell receptor repertoire.
Lidia Robert, Jennifer Tsoi, Xiaoyan Wang, Ryan Emerson, Blanca Homet, Thinle Chodon, Stephen Mok, Rong Rong Huang, Alistair J Cochran, Begoña Comin-Anduix,[...]. Clin Cancer Res 2014
237
6

Peripheral T cell expansion predicts tumour infiltration and clinical response.
Thomas D Wu, Shravan Madireddi, Patricia E de Almeida, Romain Banchereau, Ying-Jiun J Chen, Avantika S Chitre, Eugene Y Chiang, Hina Iftikhar, William E O'Gorman, Amelia Au-Yeung,[...]. Nature 2020
202
6

High-throughput sequencing of T-cell receptors reveals a homogeneous repertoire of tumour-infiltrating lymphocytes in ovarian cancer.
Ryan O Emerson, Anna M Sherwood, Mark J Rieder, Jamie Guenthoer, David W Williamson, Christopher S Carlson, Charles W Drescher, Muneesh Tewari, Jason H Bielas, Harlan S Robins. J Pathol 2013
112
6

Comprehensive T cell repertoire characterization of non-small cell lung cancer.
Alexandre Reuben, Jiexin Zhang, Shin-Heng Chiou, Rachel M Gittelman, Jun Li, Won-Chul Lee, Junya Fujimoto, Carmen Behrens, Xiaoke Liu, Feng Wang,[...]. Nat Commun 2020
73
8

Improved survival with T cell clonotype stability after anti-CTLA-4 treatment in cancer patients.
Edward Cha, Mark Klinger, Yafei Hou, Craig Cummings, Antoni Ribas, Malek Faham, Lawrence Fong. Sci Transl Med 2014
279
6


Distinctive properties of identical twins' TCR repertoires revealed by high-throughput sequencing.
Ivan V Zvyagin, Mikhail V Pogorelyy, Marina E Ivanova, Ekaterina A Komech, Mikhail Shugay, Dmitry A Bolotin, Andrey A Shelenkov, Alexey A Kurnosov, Dmitriy B Staroverov, Dmitriy M Chudakov,[...]. Proc Natl Acad Sci U S A 2014
77
6

Individual heritable differences result in unique cell lymphocyte receptor repertoires of naïve and antigen-experienced cells.
Florian Rubelt, Christopher R Bolen, Helen M McGuire, Jason A Vander Heiden, Daniel Gadala-Maria, Mikhail Levin, Ghia M Euskirchen, Murad R Mamedov, Gary E Swan, Cornelia L Dekker,[...]. Nat Commun 2016
76
6

Peripheral Blood TCR Repertoire Profiling May Facilitate Patient Stratification for Immunotherapy against Melanoma.
Sabrina A Hogan, Anaïs Courtier, Phil F Cheng, Nicoletta F Jaberg-Bentele, Simone M Goldinger, Manuarii Manuel, Solène Perez, Nadia Plantier, Jean-François Mouret, Thi Dan Linh Nguyen-Kim,[...]. Cancer Immunol Res 2019
66
7

Statistical inference of the generation probability of T-cell receptors from sequence repertoires.
Anand Murugan, Thierry Mora, Aleksandra M Walczak, Curtis G Callan. Proc Natl Acad Sci U S A 2012
152
5

Towards error-free profiling of immune repertoires.
Mikhail Shugay, Olga V Britanova, Ekaterina M Merzlyak, Maria A Turchaninova, Ilgar Z Mamedov, Timur R Tuganbaev, Dmitriy A Bolotin, Dmitry B Staroverov, Ekaterina V Putintseva, Karla Plevova,[...]. Nat Methods 2014
252
5

The naive T-cell receptor repertoire has an extremely broad distribution of clone sizes.
Peter C de Greef, Theres Oakes, Bram Gerritsen, Mazlina Ismail, James M Heather, Rutger Hermsen, Benjamin Chain, Rob J de Boer. Elife 2020
25
20

Single T Cell Sequencing Demonstrates the Functional Role of αβ TCR Pairing in Cell Lineage and Antigen Specificity.
Jason A Carter, Jonathan B Preall, Kristina Grigaityte, Stephen J Goldfless, Eric Jeffery, Adrian W Briggs, Francois Vigneault, Gurinder S Atwal. Front Immunol 2019
32
15

Preferential Use of Public TCR during Autoimmune Encephalomyelitis.
Yunqian Zhao, Phuong Nguyen, Jing Ma, Tianhua Wu, Lindsay L Jones, Deqing Pei, Cheng Cheng, Terrence L Geiger. J Immunol 2016
23
21

Design and standardization of PCR primers and protocols for detection of clonal immunoglobulin and T-cell receptor gene recombinations in suspect lymphoproliferations: report of the BIOMED-2 Concerted Action BMH4-CT98-3936.
J J M van Dongen, A W Langerak, M Brüggemann, P A S Evans, M Hummel, F L Lavender, E Delabesse, F Davi, E Schuuring, R García-Sanz,[...]. Leukemia 2003
5


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.