A citation-based method for searching scientific literature

Junpei Yamamoto, Kenichi Hitomi, Ryosuke Hayashi, Elizabeth D Getzoff, Shigenori Iwai. Biochemistry 2009
Times Cited: 20







List of co-cited articles
227 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Crystal structure and mechanism of a DNA (6-4) photolyase.
Melanie J Maul, Thomas R M Barends, Andreas F Glas, Max J Cryle, Tatiana Domratcheva, Sabine Schneider, Ilme Schlichting, Thomas Carell. Angew Chem Int Ed Engl 2008
140
85

Crystal structure of the T(6-4)C lesion in complex with a (6-4) DNA photolyase and repair of UV-induced (6-4) and Dewar photolesions.
Andreas F Glas, Sabine Schneider, Melanie J Maul, Ulrich Hennecke, Thomas Carell. Chemistry 2009
58
85


Role of two histidines in the (6-4) photolyase reaction.
K Hitomi, H Nakamura, S T Kim, T Mizukoshi, T Ishikawa, S Iwai, T Todo. J Biol Chem 2001
97
80

Electron-transfer induced repair of 6-4 photoproducts in DNA: a computational study.
O Anders Borg, Leif A Eriksson, Bo Durbeej. J Phys Chem A 2007
33
80

Dynamics and mechanism of repair of ultraviolet-induced (6-4) photoproduct by photolyase.
Jiang Li, Zheyun Liu, Chuang Tan, Xunmin Guo, Lijuan Wang, Aziz Sancar, Dongping Zhong. Nature 2010
140
80

Theoretical study on the repair mechanism of the (6-4) photolesion by the (6-4) photolyase.
Keyarash Sadeghian, Marco Bocola, Thomas Merz, Martin Schütz. J Am Chem Soc 2010
50
80


Reaction mechanism of (6-4) photolyase.
X Zhao, J Liu, D S Hsu, S Zhao, J S Taylor, A Sancar. J Biol Chem 1997
119
75

A new photoreactivating enzyme that specifically repairs ultraviolet light-induced (6-4)photoproducts.
T Todo, H Takemori, H Ryo, M Ihara, T Matsunaga, O Nikaido, K Sato, T Nomura. Nature 1993
225
65

Crystal structure of a photolyase bound to a CPD-like DNA lesion after in situ repair.
Alexandra Mees, Tobias Klar, Petra Gnau, Ulrich Hennecke, Andre P M Eker, Thomas Carell, Lars-Oliver Essen. Science 2004
271
65

Electron nuclear double resonance differentiates complementary roles for active site histidines in (6-4) photolyase.
Erik Schleicher, Kenichi Hitomi, Christopher W M Kay, Elizabeth D Getzoff, Takeshi Todo, Stefan Weber. J Biol Chem 2007
68
60

Repair of the (6-4) photoproduct by DNA photolyase requires two photons.
Junpei Yamamoto, Ryan Martin, Shigenori Iwai, Pascal Plaza, Klaus Brettel. Angew Chem Int Ed Engl 2013
40
60


Direct observation of thymine dimer repair in DNA by photolyase.
Ya-Ting Kao, Chaitanya Saxena, Lijuan Wang, Aziz Sancar, Dongping Zhong. Proc Natl Acad Sci U S A 2005
175
55

Dynamics and mechanism of cyclobutane pyrimidine dimer repair by DNA photolyase.
Zheyun Liu, Chuang Tan, Xunmin Guo, Ya-Ting Kao, Jiang Li, Lijuan Wang, Aziz Sancar, Dongping Zhong. Proc Natl Acad Sci U S A 2011
112
55

Electron tunneling pathways and role of adenine in repair of cyclobutane pyrimidine dimer by DNA photolyase.
Zheyun Liu, Xunmin Guo, Chuang Tan, Jiang Li, Ya-Ting Kao, Lijuan Wang, Aziz Sancar, Dongping Zhong. J Am Chem Soc 2012
49
55


Light-driven DNA repair by photolyases.
L O Essen, T Klar. Cell Mol Life Sci 2006
111
50

A QM/MM investigation of thymine dimer radical anion splitting catalyzed by DNA photolyase.
Fanny Masson, Teodoro Laino, Ursula Rothlisberger, Jürg Hutter. Chemphyschem 2009
49
50

Intermolecular Coulombic Decay in Biology: The Initial Electron Detachment from FADH(-) in DNA Photolyases.
Philipp H P Harbach, Matthias Schneider, Shirin Faraji, Andreas Dreuw. J Phys Chem Lett 2013
24
50



Evidence that the (6-4) photolyase mechanism can proceed through an oxetane intermediate.
Saâdia Asgatay, Christian Petermann, Dominique Harakat, Dominique Guillaume, John-Stephen Taylor, Pascale Clivio. J Am Chem Soc 2008
18
50

Ultrafast dynamics and anionic active states of the flavin cofactor in cryptochrome and photolyase.
Ya-Ting Kao, Chuang Tan, Sang-Hun Song, Nuri Oztürk, Jiang Li, Lijuan Wang, Aziz Sancar, Dongping Zhong. J Am Chem Soc 2008
104
45

Computational study of thymine dimer radical anion splitting in the self-repair process of duplex DNA.
Fanny Masson, Teodoro Laino, Ivano Tavernelli, Ursula Rothlisberger, Jürg Hutter. J Am Chem Soc 2008
42
45

Cis-syn thymidine dimer repair by DNA photolyase in real time.
Alexander W MacFarlane, Robert J Stanley. Biochemistry 2003
74
45

Computational studies of DNA photolyase.
Christopher B Harrison, Lauren L O'Neil, Olaf Wiest. J Phys Chem A 2005
53
45

Crystal structure of DNA photolyase from Escherichia coli.
H W Park, S T Kim, A Sancar, J Deisenhofer. Science 1995
399
45

Physicochemical mechanism of light-driven DNA repair by (6-4) photolyases.
Shirin Faraji, Andreas Dreuw. Annu Rev Phys Chem 2014
34
45

The mechanism of action of DNA photolyases.
T Carell, L T Burgdorf, L M Kundu, M Cichon. Curr Opin Chem Biol 2001
110
40


Theoretical study of excitation energy transfer in DNA photolyase.
Xuehe Zheng, Jorge Garcia, Alexei A Stuchebrukhov. J Phys Chem B 2008
21
40

UV-induced DNA damage and repair: a review.
Rajeshwar P Sinha, Donat P Häder. Photochem Photobiol Sci 2002
904
40


Kinetics of cyclobutane thymine dimer splitting by DNA photolyase directly monitored in the UV.
Viruthachalam Thiagarajan, Martin Byrdin, André P M Eker, Pavel Müller, Klaus Brettel. Proc Natl Acad Sci U S A 2011
53
40


Molecular mechanisms of photocarcinogenesis.
Yasuhiro Matsumura, Honnavara N Ananthaswamy. Front Biosci 2002
92
35

Ultrafast solvation dynamics at binding and active sites of photolyases.
Chih-Wei Chang, Lijun Guo, Ya-Ting Kao, Jiang Li, Chuang Tan, Tanping Li, Chaitanya Saxena, Zheyun Liu, Lijuan Wang, Aziz Sancar,[...]. Proc Natl Acad Sci U S A 2010
56
35

Intraprotein radical transfer during photoactivation of DNA photolyase.
C Aubert, M H Vos, P Mathis, A P Eker, K Brettel. Nature 2000
320
35

Recognition and repair of UV lesions in loop structures of duplex DNA by DASH-type cryptochrome.
Richard Pokorny, Tobias Klar, Ulrich Hennecke, Thomas Carell, Alfred Batschauer, Lars-Oliver Essen. Proc Natl Acad Sci U S A 2008
127
35



Reaction mechanisms of DNA photolyase.
Klaus Brettel, Martin Byrdin. Curr Opin Struct Biol 2010
113
35

The Protonation States of the Active-Site Histidines in (6-4) Photolyase.
Karmen Condic-Jurkic, Ana-Sunčana Smith, Hendrik Zipse, David M Smith. J Chem Theory Comput 2012
15
46

Dynamics and mechanism of DNA repair in a biomimetic system: flavin-thymine dimer adduct.
Ya-Ting Kao, Qin-Hua Song, Chaitanya Saxena, Lijuan Wang, Dongping Zhong. J Am Chem Soc 2012
21
35

Structural and evolutionary aspects of antenna chromophore usage by class II photolyases.
Stephan Kiontke, Petra Gnau, Reinhard Haselsberger, Alfred Batschauer, Lars-Oliver Essen. J Biol Chem 2014
33
35

The molecular origin of high DNA-repair efficiency by photolyase.
Chuang Tan, Zheyun Liu, Jiang Li, Xunmin Guo, Lijuan Wang, Aziz Sancar, Dongping Zhong. Nat Commun 2015
35
35

The cryptochromes: blue light photoreceptors in plants and animals.
Inês Chaves, Richard Pokorny, Martin Byrdin, Nathalie Hoang, Thorsten Ritz, Klaus Brettel, Lars-Oliver Essen, Gijsbertus T J van der Horst, Alfred Batschauer, Margaret Ahmad. Annu Rev Plant Biol 2011
505
35

Electron transfer mechanisms of DNA repair by photolyase.
Dongping Zhong. Annu Rev Phys Chem 2015
60
35


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.