A citation-based method for searching scientific literature

Yoshinori Shichida, Take Matsuyama. Philos Trans R Soc Lond B Biol Sci 2009
Times Cited: 209







List of co-cited articles
795 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The opsins.
Akihisa Terakita. Genome Biol 2005
318
29

Microbial and animal rhodopsins: structures, functions, and molecular mechanisms.
Oliver P Ernst, David T Lodowski, Marcus Elstner, Peter Hegemann, Leonid S Brown, Hideki Kandori. Chem Rev 2014
557
21

Shedding new light on opsin evolution.
Megan L Porter, Joseph R Blasic, Michael J Bok, Evan G Cameron, Thomas Pringle, Thomas W Cronin, Phyllis R Robinson. Proc Biol Sci 2012
158
16

The Last Common Ancestor of Most Bilaterian Animals Possessed at Least Nine Opsins.
M Desmond Ramirez, Autum N Pairett, M Sabrina Pankey, Jeanne M Serb, Daniel I Speiser, Andrew J Swafford, Todd H Oakley. Genome Biol Evol 2016
60
20


UV-sensitive photoreceptor protein OPN5 in humans and mice.
Daisuke Kojima, Suguru Mori, Masaki Torii, Akimori Wada, Rika Morishita, Yoshitaka Fukada. PLoS One 2011
100
11

Metazoan opsin evolution reveals a simple route to animal vision.
Roberto Feuda, Sinead C Hamilton, James O McInerney, Davide Pisani. Proc Natl Acad Sci U S A 2012
101
10


Opn5 is a UV-sensitive bistable pigment that couples with Gi subtype of G protein.
Takahiro Yamashita, Hideyo Ohuchi, Sayuri Tomonari, Keiko Ikeda, Kazumi Sakai, Yoshinori Shichida. Proc Natl Acad Sci U S A 2010
111
10

Melanopsin: An opsin in melanophores, brain, and eye.
I Provencio, G Jiang, W J De Grip, W P Hayes, M D Rollag. Proc Natl Acad Sci U S A 1998
599
10

Crystal structure of rhodopsin: A G protein-coupled receptor.
K Palczewski, T Kumasaka, T Hori, C A Behnke, H Motoshima, B A Fox, I Le Trong, D C Teller, T Okada, R E Stenkamp,[...]. Science 2000
10

Of ion pumps, sensors and channels - perspectives on microbial rhodopsins between science and history.
Mathias Grote, Martin Engelhard, Peter Hegemann. Biochim Biophys Acta 2014
60
15

Phototransduction and the evolution of photoreceptors.
Gordon L Fain, Roger Hardie, Simon B Laughlin. Curr Biol 2010
139
9

Neuropsin (OPN5)-mediated photoentrainment of local circadian oscillators in mammalian retina and cornea.
Ethan D Buhr, Wendy W S Yue, Xiaozhi Ren, Zheng Jiang, Hsi-Wen Rock Liao, Xue Mei, Shruti Vemaraju, Minh-Thanh Nguyen, Randall R Reed, Richard A Lang,[...]. Proc Natl Acad Sci U S A 2015
76
11

Neuropsin (Opn5): a novel opsin identified in mammalian neural tissue.
Emma E Tarttelin, James Bellingham, Mark W Hankins, Russell G Foster, Robert J Lucas. FEBS Lett 2003
110
9

Phototransduction motifs and variations.
King-Wai Yau, Roger C Hardie. Cell 2009
248
9

Bacteriorhodopsin.
Janos K Lanyi. Annu Rev Physiol 2004
373
9

Microbial Rhodopsins: Diversity, Mechanisms, and Optogenetic Applications.
Elena G Govorunova, Oleg A Sineshchekov, Hai Li, John L Spudich. Annu Rev Biochem 2017
140
9

Bistable UV pigment in the lamprey pineal.
Mitsumasa Koyanagi, Emi Kawano, Yoshimi Kinugawa, Tadashi Oishi, Yoshinori Shichida, Satoshi Tamotsu, Akihisa Terakita. Proc Natl Acad Sci U S A 2004
93
8

A mammalian neural tissue opsin (Opsin 5) is a deep brain photoreceptor in birds.
Yusuke Nakane, Keisuke Ikegami, Hiroko Ono, Naoyuki Yamamoto, Shosei Yoshida, Kanjun Hirunagi, Shizufumi Ebihara, Yoshihiro Kubo, Takashi Yoshimura. Proc Natl Acad Sci U S A 2010
179
8

Diminished pupillary light reflex at high irradiances in melanopsin-knockout mice.
R J Lucas, S Hattar, M Takao, D M Berson, R G Foster, K-W Yau. Science 2003
559
8

Millisecond-timescale, genetically targeted optical control of neural activity.
Edward S Boyden, Feng Zhang, Ernst Bamberg, Georg Nagel, Karl Deisseroth. Nat Neurosci 2005
8

Light-driven ion-translocating rhodopsins in marine bacteria.
Keiichi Inoue, Yoshitaka Kato, Hideki Kandori. Trends Microbiol 2015
73
10

A G protein-coupled receptor at work: the rhodopsin model.
Klaus Peter Hofmann, Patrick Scheerer, Peter W Hildebrand, Hui-Woog Choe, Jung Hee Park, Martin Heck, Oliver P Ernst. Trends Biochem Sci 2009
271
8

Chemistry and biology of vision.
Krzysztof Palczewski. J Biol Chem 2012
178
8

Extraordinary diversity of visual opsin genes in dragonflies.
Ryo Futahashi, Ryouka Kawahara-Miki, Michiyo Kinoshita, Kazutoshi Yoshitake, Shunsuke Yajima, Kentaro Arikawa, Takema Fukatsu. Proc Natl Acad Sci U S A 2015
86
8

Evolution of mammalian Opn5 as a specialized UV-absorbing pigment by a single amino acid mutation.
Takahiro Yamashita, Katsuhiko Ono, Hideyo Ohuchi, Akane Yumoto, Hitoshi Gotoh, Sayuri Tomonari, Kazumi Sakai, Hirofumi Fujita, Yasushi Imamoto, Sumihare Noji,[...]. J Biol Chem 2014
36
19

Phototransduction by retinal ganglion cells that set the circadian clock.
David M Berson, Felice A Dunn, Motoharu Takao. Science 2002
7

Optogenetics.
Karl Deisseroth. Nat Methods 2011
918
7

Co-expression of xenopsin and rhabdomeric opsin in photoreceptors bearing microvilli and cilia.
Oliver Vöcking, Ioannis Kourtesis, Sharat Chandra Tumu, Harald Hausen. Elife 2017
23
30

A distinct abundant group of microbial rhodopsins discovered using functional metagenomics.
Alina Pushkarev, Keiichi Inoue, Shirley Larom, José Flores-Uribe, Manish Singh, Masae Konno, Sahoko Tomida, Shota Ito, Ryoko Nakamura, Satoshi P Tsunoda,[...]. Nature 2018
85
8

Diversity of animal opsin-based pigments and their optogenetic potential.
Mitsumasa Koyanagi, Akihisa Terakita. Biochim Biophys Acta 2014
63
11

The evolution of color vision in insects.
A D Briscoe, L Chittka. Annu Rev Entomol 2001
562
6

Gene duplication and spectral diversification of cone visual pigments of zebrafish.
Akito Chinen, Takanori Hamaoka, Yukihiro Yamada, Shoji Kawamura. Genetics 2003
191
6

The evolution of irradiance detection: melanopsin and the non-visual opsins.
Stuart N Peirson, Stephanie Halford, Russell G Foster. Philos Trans R Soc Lond B Biol Sci 2009
137
6


Cephalochordate melanopsin: evolutionary linkage between invertebrate visual cells and vertebrate photosensitive retinal ganglion cells.
Mitsumasa Koyanagi, Kaoru Kubokawa, Hisao Tsukamoto, Yoshinori Shichida, Akihisa Terakita. Curr Biol 2005
158
6

Ciliary photoreceptors with a vertebrate-type opsin in an invertebrate brain.
Detlev Arendt, Kristin Tessmar-Raible, Heidi Snyman, Adriaan W Dorresteijn, Joachim Wittbrodt. Science 2004
235
6

Unconventional Roles of Opsins.
Nicole Y Leung, Craig Montell. Annu Rev Cell Dev Biol 2017
50
12

Two UV-Sensitive Photoreceptor Proteins, Opn5m and Opn5m2 in Ray-Finned Fish with Distinct Molecular Properties and Broad Distribution in the Retina and Brain.
Keita Sato, Takahiro Yamashita, Yoshihiro Haruki, Hideyo Ohuchi, Masato Kinoshita, Yoshinori Shichida. PLoS One 2016
20
30


A novel human opsin in the inner retina.
I Provencio, I R Rodriguez, G Jiang, W P Hayes, E F Moreira, M D Rollag. J Neurosci 2000
677
6

Melanopsin tristability for sustained and broadband phototransduction.
Alan Joseph Emanuel, Michael Tri Hoang Do. Neuron 2015
77
7

Theory and Simulation of the Ultrafast Double-Bond Isomerization of Biological Chromophores.
Samer Gozem, Hoi Ling Luk, Igor Schapiro, Massimo Olivucci. Chem Rev 2017
120
6

Homologs of vertebrate Opn3 potentially serve as a light sensor in nonphotoreceptive tissue.
Mitsumasa Koyanagi, Eiichiro Takada, Takashi Nagata, Hisao Tsukamoto, Akihisa Terakita. Proc Natl Acad Sci U S A 2013
83
7

Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup.
Trevor D Lamb, Shaun P Collin, Edward N Pugh. Nat Rev Neurosci 2007
246
6

A light-driven sodium ion pump in marine bacteria.
Keiichi Inoue, Hikaru Ono, Rei Abe-Yoshizumi, Susumu Yoshizawa, Hiroyasu Ito, Kazuhiro Kogure, Hideki Kandori. Nat Commun 2013
224
6

Closing in on bacteriorhodopsin: progress in understanding the molecule.
U Haupts, J Tittor, D Oesterhelt. Annu Rev Biophys Biomol Struct 1999
388
6

Neuropsin (OPN5) Mediates Local Light-Dependent Induction of Circadian Clock Genes and Circadian Photoentrainment in Exposed Murine Skin.
Ethan D Buhr, Shruti Vemaraju, Nicolás Diaz, Richard A Lang, Russell N Van Gelder. Curr Biol 2019
38
15



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.