A citation-based method for searching scientific literature

Marco P Boks, Eske M Derks, Daniel J Weisenberger, Erik Strengman, Esther Janson, Iris E Sommer, René S Kahn, Roel A Ophoff. PLoS One 2009
Times Cited: 235







List of co-cited articles
746 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



Genome-wide methylation profiles reveal quantitative views of human aging rates.
Gregory Hannum, Justin Guinney, Ling Zhao, Li Zhang, Guy Hughes, SriniVas Sadda, Brandy Klotzle, Marina Bibikova, Jian-Bing Fan, Yuan Gao,[...]. Mol Cell 2013
23

DNA methylation arrays as surrogate measures of cell mixture distribution.
Eugene Andres Houseman, William P Accomando, Devin C Koestler, Brock C Christensen, Carmen J Marsit, Heather H Nelson, John K Wiencke, Karl T Kelsey. BMC Bioinformatics 2012
23

Aging effects on DNA methylation modules in human brain and blood tissue.
Steve Horvath, Yafeng Zhang, Peter Langfelder, René S Kahn, Marco P M Boks, Kristel van Eijk, Leonard H van den Berg, Roel A Ophoff. Genome Biol 2012
353
21

Epigenetic differences arise during the lifetime of monozygotic twins.
Mario F Fraga, Esteban Ballestar, Maria F Paz, Santiago Ropero, Fernando Setien, Maria L Ballestar, Damia Heine-Suñer, Juan C Cigudosa, Miguel Urioste, Javier Benitez,[...]. Proc Natl Acad Sci U S A 2005
20

Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis.
Pan Du, Xiao Zhang, Chiang-Ching Huang, Nadereh Jafari, Warren A Kibbe, Lifang Hou, Simon M Lin. BMC Bioinformatics 2010
997
18

Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays.
Martin J Aryee, Andrew E Jaffe, Hector Corrada-Bravo, Christine Ladd-Acosta, Andrew P Feinberg, Kasper D Hansen, Rafael A Irizarry. Bioinformatics 2014
17

Epigenome-wide scans identify differentially methylated regions for age and age-related phenotypes in a healthy ageing population.
Jordana T Bell, Pei-Chien Tsai, Tsun-Po Yang, Ruth Pidsley, James Nisbet, Daniel Glass, Massimo Mangino, Guangju Zhai, Feng Zhang, Ana Valdes,[...]. PLoS Genet 2012
431
16

Distinct DNA methylomes of newborns and centenarians.
Holger Heyn, Ning Li, Humberto J Ferreira, Sebastian Moran, David G Pisano, Antonio Gomez, Javier Diez, Jose V Sanchez-Mut, Fernando Setien, F Javier Carmona,[...]. Proc Natl Acad Sci U S A 2012
455
14

Aging and environmental exposures alter tissue-specific DNA methylation dependent upon CpG island context.
Brock C Christensen, E Andres Houseman, Carmen J Marsit, Shichun Zheng, Margaret R Wrensch, Joseph L Wiemels, Heather H Nelson, Margaret R Karagas, James F Padbury, Raphael Bueno,[...]. PLoS Genet 2009
675
14

DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines.
Jordana T Bell, Athma A Pai, Joseph K Pickrell, Daniel J Gaffney, Roger Pique-Regi, Jacob F Degner, Yoav Gilad, Jonathan K Pritchard. Genome Biol 2011
570
14

Discovery of cross-reactive probes and polymorphic CpGs in the Illumina Infinium HumanMethylation450 microarray.
Yi-an Chen, Mathieu Lemire, Sanaa Choufani, Darci T Butcher, Daria Grafodatskaya, Brent W Zanke, Steven Gallinger, Thomas J Hudson, Rosanna Weksberg. Epigenetics 2013
821
14

Epigenetic predictor of age.
Sven Bocklandt, Wen Lin, Mary E Sehl, Francisco J Sánchez, Janet S Sinsheimer, Steve Horvath, Eric Vilain. PLoS One 2011
424
13

Charting a dynamic DNA methylation landscape of the human genome.
Michael J Ziller, Hongcang Gu, Fabian Müller, Julie Donaghey, Linus T-Y Tsai, Oliver Kohlbacher, Philip L De Jager, Evan D Rosen, David A Bennett, Bradley E Bernstein,[...]. Nature 2013
768
13

Functional annotation of the human brain methylome identifies tissue-specific epigenetic variation across brain and blood.
Matthew N Davies, Manuela Volta, Ruth Pidsley, Katie Lunnon, Abhishek Dixit, Simon Lovestone, Cristian Coarfa, R Alan Harris, Aleksandar Milosavljevic, Claire Troakes,[...]. Genome Biol 2012
451
13

Gender specific differences in levels of DNA methylation at selected loci from human total blood: a tendency toward higher methylation levels in males.
Osman El-Maarri, Tim Becker, Judith Junen, Syed Saadi Manzoor, Amalia Diaz-Lacava, Rainer Schwaab, Thomas Wienker, Johannes Oldenburg. Hum Genet 2007
193
13

A study of the influence of sex on genome wide methylation.
Jingyu Liu, Marilee Morgan, Kent Hutchison, Vince D Calhoun. PLoS One 2010
164
12

High density DNA methylation array with single CpG site resolution.
Marina Bibikova, Bret Barnes, Chan Tsan, Vincent Ho, Brandy Klotzle, Jennie M Le, David Delano, Lu Zhang, Gary P Schroth, Kevin L Gunderson,[...]. Genomics 2011
12

Decline in genomic DNA methylation through aging in a cohort of elderly subjects.
Valentina Bollati, Joel Schwartz, Robert Wright, Augusto Litonjua, Letizia Tarantini, Helen Suh, David Sparrow, Pantel Vokonas, Andrea Baccarelli. Mech Ageing Dev 2009
380
12

Differential DNA methylation in purified human blood cells: implications for cell lineage and studies on disease susceptibility.
Lovisa E Reinius, Nathalie Acevedo, Maaike Joerink, Göran Pershagen, Sven-Erik Dahlén, Dario Greco, Cilla Söderhäll, Annika Scheynius, Juha Kere. PLoS One 2012
631
12

Age-dependent DNA methylation of genes that are suppressed in stem cells is a hallmark of cancer.
Andrew E Teschendorff, Usha Menon, Aleksandra Gentry-Maharaj, Susan J Ramus, Daniel J Weisenberger, Hui Shen, Mihaela Campan, Houtan Noushmehr, Christopher G Bell, A Peter Maxwell,[...]. Genome Res 2010
528
12

Human aging-associated DNA hypermethylation occurs preferentially at bivalent chromatin domains.
Vardhman K Rakyan, Thomas A Down, Siarhei Maslau, Toby Andrew, Tsun-Po Yang, Huriya Beyan, Pamela Whittaker, Owen T McCann, Sarah Finer, Ana M Valdes,[...]. Genome Res 2010
451
11

A beta-mixture quantile normalization method for correcting probe design bias in Illumina Infinium 450 k DNA methylation data.
Andrew E Teschendorff, Francesco Marabita, Matthias Lechner, Thomas Bartlett, Jesper Tegner, David Gomez-Cabrero, Stephan Beck. Bioinformatics 2013
739
11

DNA methylation profiles in monozygotic and dizygotic twins.
Zachary A Kaminsky, Thomas Tang, Sun-Chong Wang, Carolyn Ptak, Gabriel H T Oh, Albert H C Wong, Laura A Feldcamp, Carl Virtanen, Jonas Halfvarson, Curt Tysk,[...]. Nat Genet 2009
428
11

Significant differences in global genomic DNA methylation by gender and race/ethnicity in peripheral blood.
Fang Fang Zhang, Roberto Cardarelli, Joan Carroll, Kimberly G Fulda, Manleen Kaur, Karina Gonzalez, Jamboor K Vishwanatha, Regina M Santella, Alfredo Morabia. Epigenetics 2011
239
11

Tobacco smoking leads to extensive genome-wide changes in DNA methylation.
Sonja Zeilinger, Brigitte Kühnel, Norman Klopp, Hansjörg Baurecht, Anja Kleinschmidt, Christian Gieger, Stephan Weidinger, Eva Lattka, Jerzy Adamski, Annette Peters,[...]. PLoS One 2013
455
11


Continuous Aging of the Human DNA Methylome Throughout the Human Lifespan.
Asa Johansson, Stefan Enroth, Ulf Gyllensten. PLoS One 2013
188
11


Age-associated DNA methylation in pediatric populations.
Reid S Alisch, Benjamin G Barwick, Pankaj Chopra, Leila K Myrick, Glen A Satten, Karen N Conneely, Stephen T Warren. Genome Res 2012
230
10

Epigenetic programming by maternal behavior.
Ian C G Weaver, Nadia Cervoni, Frances A Champagne, Ana C D'Alessio, Shakti Sharma, Jonathan R Seckl, Sergiy Dymov, Moshe Szyf, Michael J Meaney. Nat Neurosci 2004
10


Epigenome-wide association data implicate DNA methylation as an intermediary of genetic risk in rheumatoid arthritis.
Yun Liu, Martin J Aryee, Leonid Padyukov, M Daniele Fallin, Espen Hesselberg, Arni Runarsson, Lovisa Reinius, Nathalie Acevedo, Margaret Taub, Marcus Ronninger,[...]. Nat Biotechnol 2013
564
10

Cross-sectional and longitudinal changes in DNA methylation with age: an epigenome-wide analysis revealing over 60 novel age-associated CpG sites.
Ines Florath, Katja Butterbach, Heiko Müller, Melanie Bewerunge-Hudler, Hermann Brenner. Hum Mol Genet 2014
190
10

Age-associated epigenetic drift: implications, and a case of epigenetic thrift?
Andrew E Teschendorff, James West, Stephan Beck. Hum Mol Genet 2013
164
10

The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores.
Rafael A Irizarry, Christine Ladd-Acosta, Bo Wen, Zhijin Wu, Carolina Montano, Patrick Onyango, Hengmi Cui, Kevin Gabo, Michael Rongione, Maree Webster,[...]. Nat Genet 2009
10

Genetic control of individual differences in gene-specific methylation in human brain.
Dandan Zhang, Lijun Cheng, Judith A Badner, Chao Chen, Qi Chen, Wei Luo, David W Craig, Margot Redman, Elliot S Gershon, Chunyu Liu. Am J Hum Genet 2010
292
10

Factors underlying variable DNA methylation in a human community cohort.
Lucia L Lam, Eldon Emberly, Hunter B Fraser, Sarah M Neumann, Edith Chen, Gregory E Miller, Michael S Kobor. Proc Natl Acad Sci U S A 2012
264
10

DNA methylation signatures in development and aging of the human prefrontal cortex.
Shusuke Numata, Tianzhang Ye, Thomas M Hyde, Xavier Guitart-Navarro, Ran Tao, Michael Wininger, Carlo Colantuoni, Daniel R Weinberger, Joel E Kleinman, Barbara K Lipska. Am J Hum Genet 2012
253
9


DNA methylation profiling of human chromosomes 6, 20 and 22.
Florian Eckhardt, Joern Lewin, Rene Cortese, Vardhman K Rakyan, John Attwood, Matthias Burger, John Burton, Tony V Cox, Rob Davies, Thomas A Down,[...]. Nat Genet 2006
888
9

Differential DNA methylation with age displays both common and dynamic features across human tissues that are influenced by CpG landscape.
Kenneth Day, Lindsay L Waite, Anna Thalacker-Mercer, Andrew West, Marcas M Bamman, James D Brooks, Richard M Myers, Devin Absher. Genome Biol 2013
201
9

Human DNA methylomes at base resolution show widespread epigenomic differences.
Ryan Lister, Mattia Pelizzola, Robert H Dowen, R David Hawkins, Gary Hon, Julian Tonti-Filippini, Joseph R Nery, Leonard Lee, Zhen Ye, Que-Minh Ngo,[...]. Nature 2009
9

Genetic analysis of DNA methylation and gene expression levels in whole blood of healthy human subjects.
Kristel R van Eijk, Simone de Jong, Marco P M Boks, Terry Langeveld, Fabrice Colas, Jan H Veldink, Carolien G F de Kovel, Esther Janson, Eric Strengman, Peter Langfelder,[...]. BMC Genomics 2012
141
9

Allele-specific FKBP5 DNA demethylation mediates gene-childhood trauma interactions.
Torsten Klengel, Divya Mehta, Christoph Anacker, Monika Rex-Haffner, Jens C Pruessner, Carmine M Pariante, Thaddeus W W Pace, Kristina B Mercer, Helen S Mayberg, Bekh Bradley,[...]. Nat Neurosci 2013
798
9

Abundant quantitative trait loci exist for DNA methylation and gene expression in human brain.
J Raphael Gibbs, Marcel P van der Brug, Dena G Hernandez, Bryan J Traynor, Michael A Nalls, Shiao-Lin Lai, Sampath Arepalli, Allissa Dillman, Ian P Rafferty, Juan Troncoso,[...]. PLoS Genet 2010
562
9

DNA methylation age of blood predicts all-cause mortality in later life.
Riccardo E Marioni, Sonia Shah, Allan F McRae, Brian H Chen, Elena Colicino, Sarah E Harris, Jude Gibson, Anjali K Henders, Paul Redmond, Simon R Cox,[...]. Genome Biol 2015
519
9

Methylation of ELOVL2 gene as a new epigenetic marker of age.
Paolo Garagnani, Maria G Bacalini, Chiara Pirazzini, Davide Gori, Cristina Giuliani, Daniela Mari, Anna M Di Blasio, Davide Gentilini, Giovanni Vitale, Sebastiano Collino,[...]. Aging Cell 2012
205
8

A data-driven approach to preprocessing Illumina 450K methylation array data.
Ruth Pidsley, Chloe C Y Wong, Manuela Volta, Katie Lunnon, Jonathan Mill, Leonard C Schalkwyk. BMC Genomics 2013
498
8

Tobacco-smoking-related differential DNA methylation: 27K discovery and replication.
Lutz P Breitling, Rongxi Yang, Bernhard Korn, Barbara Burwinkel, Hermann Brenner. Am J Hum Genet 2011
439
8


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.