A citation-based method for searching scientific literature

Allan R Jones, Caroline C Overly, Susan M Sunkin. Nat Rev Neurosci 2009
Times Cited: 161







List of co-cited articles
368 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Genome-wide atlas of gene expression in the adult mouse brain.
Ed S Lein, Michael J Hawrylycz, Nancy Ao, Mikael Ayres, Amy Bensinger, Amy Bernard, Andrew F Boe, Mark S Boguski, Kevin S Brockway, Emi J Byrnes,[...]. Nature 2007
24

An anatomically comprehensive atlas of the adult human brain transcriptome.
Michael J Hawrylycz, Ed S Lein, Angela L Guillozet-Bongaarts, Elaine H Shen, Lydia Ng, Jeremy A Miller, Louie N van de Lagemaat, Kimberly A Smith, Amanda Ebbert, Zackery L Riley,[...]. Nature 2012
18

Allen Brain Atlas: an integrated spatio-temporal portal for exploring the central nervous system.
Susan M Sunkin, Lydia Ng, Chris Lau, Tim Dolbeare, Terri L Gilbert, Carol L Thompson, Michael Hawrylycz, Chinh Dang. Nucleic Acids Res 2013
246
12

Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.
M Ashburner, C A Ball, J A Blake, D Botstein, H Butler, J M Cherry, A P Davis, K Dolinski, S S Dwight, J T Eppig,[...]. Nat Genet 2000
9

Generating specificity and diversity in the transcriptional response to hypoxia.
Urban Lendahl, Kian Leong Lee, Henry Yang, Lorenz Poellinger. Nat Rev Genet 2009
219
9

Clustering of spatial gene expression patterns in the mouse brain and comparison with classical neuroanatomy.
Jason W Bohland, Hemant Bokil, Sayan D Pathak, Chang-Kyu Lee, Lydia Ng, Christopher Lau, Chihchau Kuan, Michael Hawrylycz, Partha P Mitra. Methods 2010
44
15


An anatomic gene expression atlas of the adult mouse brain.
Lydia Ng, Amy Bernard, Chris Lau, Caroline C Overly, Hong-Wei Dong, Chihchau Kuan, Sayan Pathak, Susan M Sunkin, Chinh Dang, Jason W Bohland,[...]. Nat Neurosci 2009
171
6


Spatio-temporal transcriptome of the human brain.
Hyo Jung Kang, Yuka Imamura Kawasawa, Feng Cheng, Ying Zhu, Xuming Xu, Mingfeng Li, André M M Sousa, Mihovil Pletikos, Kyle A Meyer, Goran Sedmak,[...]. Nature 2011
6

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources.
Da Wei Huang, Brad T Sherman, Richard A Lempicki. Nat Protoc 2009
6

A mesoscale connectome of the mouse brain.
Seung Wook Oh, Julie A Harris, Lydia Ng, Brent Winslow, Nicholas Cain, Stefan Mihalas, Quanxin Wang, Chris Lau, Leonard Kuan, Alex M Henry,[...]. Nature 2014
944
6

Insights from spatially mapped gene expression in the mouse brain.
Susan M Sunkin, John G Hohmann. Hum Mol Genet 2007
29
17

Neuroinformatics for genome-wide 3D gene expression mapping in the mouse brain.
Lydia Ng, Sayan Pathak, Chihchau Kuan, Chris Lau, Hong-Wei Dong, Andrew Sodt, Chinh Dang, Brian Avants, Paul Yushkevich, James Gee,[...]. IEEE/ACM Trans Comput Biol Bioinform 2007
74
6

Exploration and visualization of gene expression with neuroanatomy in the adult mouse brain.
Christopher Lau, Lydia Ng, Carol Thompson, Sayan Pathak, Leonard Kuan, Allan Jones, Mike Hawrylycz. BMC Bioinformatics 2008
55
9

A high-resolution spatiotemporal atlas of gene expression of the developing mouse brain.
Carol L Thompson, Lydia Ng, Vilas Menon, Salvador Martinez, Chang-Kyu Lee, Katie Glattfelder, Susan M Sunkin, Alex Henry, Christopher Lau, Chinh Dang,[...]. Neuron 2014
116
5

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists.
Da Wei Huang, Brad T Sherman, Richard A Lempicki. Nucleic Acids Res 2009
5

Genomic anatomy of the hippocampus.
Carol L Thompson, Sayan D Pathak, Andreas Jeromin, Lydia L Ng, Cameron R MacPherson, Marty T Mortrud, Allison Cusick, Zackery L Riley, Susan M Sunkin, Amy Bernard,[...]. Neuron 2008
237
4

A robust and high-throughput Cre reporting and characterization system for the whole mouse brain.
Linda Madisen, Theresa A Zwingman, Susan M Sunkin, Seung Wook Oh, Hatim A Zariwala, Hong Gu, Lydia L Ng, Richard D Palmiter, Michael J Hawrylycz, Allan R Jones,[...]. Nat Neurosci 2010
4

Molecular evolution of the metazoan PHD-HIF oxygen-sensing system.
Kalle T Rytkönen, Tom A Williams, Gillian M Renshaw, Craig R Primmer, Mikko Nikinmaa. Mol Biol Evol 2011
76
5

A general framework for weighted gene co-expression network analysis.
Bin Zhang, Steve Horvath. Stat Appl Genet Mol Biol 2005
4

Large-scale cellular-resolution gene profiling in human neocortex reveals species-specific molecular signatures.
Hongkui Zeng, Elaine H Shen, John G Hohmann, Seung Wook Oh, Amy Bernard, Joshua J Royall, Katie J Glattfelder, Susan M Sunkin, John A Morris, Angela L Guillozet-Bongaarts,[...]. Cell 2012
170
4

Gene expression of Caenorhabditis elegans neurons carries information on their synaptic connectivity.
Alon Kaufman, Gideon Dror, Isaac Meilijson, Eytan Ruppin. PLoS Comput Biol 2006
40
10

Gene expression in the rodent brain is associated with its regional connectivity.
Lior Wolf, Chen Goldberg, Nathan Manor, Roded Sharan, Eytan Ruppin. PLoS Comput Biol 2011
40
10


The Cancer Genome Atlas Pan-Cancer analysis project.
John N Weinstein, Eric A Collisson, Gordon B Mills, Kenna R Mills Shaw, Brad A Ozenberger, Kyle Ellrott, Ilya Shmulevich, Chris Sander, Joshua M Stuart. Nat Genet 2013
4

Cell-type-based model explaining coexpression patterns of genes in the brain.
Pascal Grange, Jason W Bohland, Benjamin W Okaty, Ken Sugino, Hemant Bokil, Sacha B Nelson, Lydia Ng, Michael Hawrylycz, Partha P Mitra. Proc Natl Acad Sci U S A 2014
43
9

Transcriptional landscape of the prenatal human brain.
Jeremy A Miller, Song-Lin Ding, Susan M Sunkin, Kimberly A Smith, Lydia Ng, Aaron Szafer, Amanda Ebbert, Zackery L Riley, Joshua J Royall, Kaylynn Aiona,[...]. Nature 2014
560
4

NIH Image to ImageJ: 25 years of image analysis.
Caroline A Schneider, Wayne S Rasband, Kevin W Eliceiri. Nat Methods 2012
4

The Allen Human Brain Atlas: comprehensive gene expression mapping of the human brain.
Elaine H Shen, Caroline C Overly, Allan R Jones. Trends Neurosci 2012
72
5

Functional organization of the transcriptome in human brain.
Michael C Oldham, Genevieve Konopka, Kazuya Iwamoto, Peter Langfelder, Tadafumi Kato, Steve Horvath, Daniel H Geschwind. Nat Neurosci 2008
469
4

Entrez Gene: gene-centered information at NCBI.
Donna Maglott, Jim Ostell, Kim D Pruitt, Tatiana Tatusova. Nucleic Acids Res 2011
447
3


The Database of Interacting Proteins: 2004 update.
Lukasz Salwinski, Christopher S Miller, Adam J Smith, Frank K Pettit, James U Bowie, David Eisenberg. Nucleic Acids Res 2004
3

dbSNP: the NCBI database of genetic variation.
S T Sherry, M H Ward, M Kholodov, J Baker, L Phan, E M Smigielski, K Sirotkin. Nucleic Acids Res 2001
3

Human Protein Reference Database--2009 update.
T S Keshava Prasad, Renu Goel, Kumaran Kandasamy, Shivakumar Keerthikumar, Sameer Kumar, Suresh Mathivanan, Deepthi Telikicherla, Rajesh Raju, Beema Shafreen, Abhilash Venugopal,[...]. Nucleic Acids Res 2009
3

RNA-Seq: a revolutionary tool for transcriptomics.
Zhong Wang, Mark Gerstein, Michael Snyder. Nat Rev Genet 2009
3

PID: the Pathway Interaction Database.
Carl F Schaefer, Kira Anthony, Shiva Krupa, Jeffrey Buchoff, Matthew Day, Timo Hannay, Kenneth H Buetow. Nucleic Acids Res 2009
839
3

TopHat: discovering splice junctions with RNA-Seq.
Cole Trapnell, Lior Pachter, Steven L Salzberg. Bioinformatics 2009
3

Database resources of the National Center for Biotechnology Information.
Eric W Sayers, Tanya Barrett, Dennis A Benson, Evan Bolton, Stephen H Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M Church, Michael Dicuccio, Scott Federhen,[...]. Nucleic Acids Res 2012
391
3

Alternative isoform regulation in human tissue transcriptomes.
Eric T Wang, Rickard Sandberg, Shujun Luo, Irina Khrebtukova, Lu Zhang, Christine Mayr, Stephen F Kingsmore, Gary P Schroth, Christopher B Burge. Nature 2008
3

The IntAct molecular interaction database in 2012.
Samuel Kerrien, Bruno Aranda, Lionel Breuza, Alan Bridge, Fiona Broackes-Carter, Carol Chen, Margaret Duesbury, Marine Dumousseau, Marc Feuermann, Ursula Hinz,[...]. Nucleic Acids Res 2012
621
3


The neuroscience information framework: a data and knowledge environment for neuroscience.
Daniel Gardner, Huda Akil, Giorgio A Ascoli, Douglas M Bowden, William Bug, Duncan E Donohue, David H Goldberg, Bernice Grafstein, Jeffrey S Grethe, Amarnath Gupta,[...]. Neuroinformatics 2008
115
3

GenePaint.org: an atlas of gene expression patterns in the mouse embryo.
Axel Visel, Christina Thaller, Gregor Eichele. Nucleic Acids Res 2004
356
3

Hypoxic regulation of erythropoiesis and iron metabolism.
Volker H Haase. Am J Physiol Renal Physiol 2010
160
3

Targeting of HIF-alpha to the von Hippel-Lindau ubiquitylation complex by O2-regulated prolyl hydroxylation.
P Jaakkola, D R Mole, Y M Tian, M I Wilson, J Gielbert, S J Gaskell, A von Kriegsheim, H F Hebestreit, M Mukherji, C J Schofield,[...]. Science 2001
3

BrainMap: the social evolution of a human brain mapping database.
Angela R Laird, Jack L Lancaster, Peter T Fox. Neuroinformatics 2005
297
3

Functional and evolutionary insights into human brain development through global transcriptome analysis.
Matthew B Johnson, Yuka Imamura Kawasawa, Christopher E Mason, Zeljka Krsnik, Giovanni Coppola, Darko Bogdanović, Daniel H Geschwind, Shrikant M Mane, Matthew W State, Nenad Sestan. Neuron 2009
376
3

The brain atlas concordance problem: quantitative comparison of anatomical parcellations.
Jason W Bohland, Hemant Bokil, Cara B Allen, Partha P Mitra. PLoS One 2009
82
3


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.