A citation-based method for searching scientific literature

David M Parichy, Michael R Elizondo, Margaret G Mills, Tiffany N Gordon, Raymond E Engeszer. Dev Dyn 2009
Times Cited: 418







List of co-cited articles
502 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Stages of embryonic development of the zebrafish.
C B Kimmel, W W Ballard, S R Kimmel, B Ullmann, T F Schilling. Dev Dyn 1995
28

The zebrafish reference genome sequence and its relationship to the human genome.
Kerstin Howe, Matthew D Clark, Carlos F Torroja, James Torrance, Camille Berthelot, Matthieu Muffato, John E Collins, Sean Humphray, Karen McLaren, Lucy Matthews,[...]. Nature 2013
13

Fiji: an open-source platform for biological-image analysis.
Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid,[...]. Nat Methods 2012
13


Thyroid hormone-dependent adult pigment cell lineage and pattern in zebrafish.
Sarah K McMenamin, Emily J Bain, Anna E McCann, Larissa B Patterson, Dae Seok Eom, Zachary P Waller, James C Hamill, Julie A Kuhlman, Judith S Eisen, David M Parichy. Science 2014
105
11


Proliferation, dispersal and patterned aggregation of iridophores in the skin prefigure striped colouration of zebrafish.
Ajeet Pratap Singh, Ursula Schach, Christiane Nüsslein-Volhard. Nat Cell Biol 2014
76
10

Iridophores and their interactions with other chromatophores are required for stripe formation in zebrafish.
Hans Georg Frohnhöfer, Jana Krauss, Hans-Martin Maischein, Christiane Nüsslein-Volhard. Development 2013
115
8

Working with zebrafish at postembryonic stages.
S K McMenamin, M N Chandless, D M Parichy. Methods Cell Biol 2016
21
33

Interactions between zebrafish pigment cells responsible for the generation of Turing patterns.
Akiko Nakamasu, Go Takahashi, Akio Kanbe, Shigeru Kondo. Proc Natl Acad Sci U S A 2009
190
7

Heterotypic interactions regulate cell shape and density during color pattern formation in zebrafish.
Prateek Mahalwar, Ajeet Pratap Singh, Andrey Fadeev, Christiane Nüsslein-Volhard, Uwe Irion. Biol Open 2016
25
28

Is pigment patterning in fish skin determined by the Turing mechanism?
Masakatsu Watanabe, Shigeru Kondo. Trends Genet 2015
62
11

Leukocyte tyrosine kinase functions in pigment cell development.
Susana S Lopes, Xueyan Yang, Jeanette Müller, Thomas J Carney, Anthony R McAdow, Gerd-Jörg Rauch, Arie S Jacoby, Laurence D Hurst, Mariana Delfino-Machín, Pascal Haffter,[...]. PLoS Genet 2008
97
7

Thyroid hormone regulates distinct paths to maturation in pigment cell lineages.
Lauren M Saunders, Abhishek K Mishra, Andrew J Aman, Victor M Lewis, Matthew B Toomey, Jonathan S Packer, Xiaojie Qiu, Jose L McFaline-Figueroa, Joseph C Corbo, Cole Trapnell,[...]. Elife 2019
41
17

On the embryonic origin of adult melanophores: the role of ErbB and Kit signalling in establishing melanophore stem cells in zebrafish.
Christopher M Dooley, Alessandro Mongera, Brigitte Walderich, Christiane Nüsslein-Volhard. Development 2013
88
7





Transparent adult zebrafish as a tool for in vivo transplantation analysis.
Richard Mark White, Anna Sessa, Christopher Burke, Teresa Bowman, Jocelyn LeBlanc, Craig Ceol, Caitlin Bourque, Michael Dovey, Wolfram Goessling, Caroline Erter Burns,[...]. Cell Stem Cell 2008
734
6

The Developmental Genetics of Vertebrate Color Pattern Formation: Lessons from Zebrafish.
Uwe Irion, Ajeet Pratap Singh, Christiane Nüsslein-Volhard. Curr Top Dev Biol 2016
44
13

Involvement of Delta/Notch signaling in zebrafish adult pigment stripe patterning.
Hiroki Hamada, Masakatsu Watanabe, Hiu Eunice Lau, Tomoki Nishida, Toshiaki Hasegawa, David M Parichy, Shigeru Kondo. Development 2014
87
6

NIH Image to ImageJ: 25 years of image analysis.
Caroline A Schneider, Wayne S Rasband, Kevin W Eliceiri. Nat Methods 2012
6


STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
6


Zebrafish stripes as a model for vertebrate colour pattern formation.
Ajeet Pratap Singh, Christiane Nüsslein-Volhard. Curr Biol 2015
96
5


Distinct patterns of notochord mineralization in zebrafish coincide with the localization of Osteocalcin isoform 1 during early vertebral centra formation.
Anabela Bensimon-Brito, João Cardeira, Maria Leonor Cancela, Ann Huysseune, Paul Eckhard Witten. BMC Dev Biol 2012
61
8


Evolution of Endothelin signaling and diversification of adult pigment pattern in Danio fishes.
Jessica E Spiewak, Emily J Bain, Jin Liu, Kellie Kou, Samantha L Sturiale, Larissa B Patterson, Parham Diba, Judith S Eisen, Ingo Braasch, Julia Ganz,[...]. PLoS Genet 2018
26
19

The Tol2kit: a multisite gateway-based construction kit for Tol2 transposon transgenesis constructs.
Kristen M Kwan, Esther Fujimoto, Clemens Grabher, Benjamin D Mangum, Melissa E Hardy, Douglas S Campbell, John M Parant, H Joseph Yost, John P Kanki, Chi-Bin Chien. Dev Dyn 2007
5


Long-distance communication by specialized cellular projections during pigment pattern development and evolution.
Dae Seok Eom, Emily J Bain, Larissa B Patterson, Megan E Grout, David M Parichy. Elife 2015
71
7


Modelling stripe formation in zebrafish: an agent-based approach.
Alexandria Volkening, Björn Sandstede. J R Soc Interface 2015
29
17



Metamorphosis in teleosts.
Sarah K McMenamin, David M Parichy. Curr Top Dev Biol 2013
60
8

High-throughput gene targeting and phenotyping in zebrafish using CRISPR/Cas9.
Gaurav K Varshney, Wuhong Pei, Matthew C LaFave, Jennifer Idol, Lisha Xu, Viviana Gallardo, Blake Carrington, Kevin Bishop, MaryPat Jones, Mingyu Li,[...]. Genome Res 2015
269
5

The behaviour and ecology of the zebrafish, Danio rerio.
Rowena Spence, Gabriele Gerlach, Christian Lawrence, Carl Smith. Biol Rev Camb Philos Soc 2008
519
5

Rapid reverse genetic screening using CRISPR in zebrafish.
Arish N Shah, Crystal F Davey, Alex C Whitebirch, Adam C Miller, Cecilia B Moens. Nat Methods 2015
193
5

Highly Efficient CRISPR-Cas9-Based Methods for Generating Deletion Mutations and F0 Embryos that Lack Gene Function in Zebrafish.
Kazuyuki Hoshijima, Michael J Jurynec, Dana Klatt Shaw, Ashley M Jacobi, Mark A Behlke, David Jonah Grunwald. Dev Cell 2019
78
6

A classification system for zebrafish adipose tissues.
James E N Minchin, John F Rawls. Dis Model Mech 2017
41
9


Spot pattern of leopard Danio is caused by mutation in the zebrafish connexin41.8 gene.
Masakatsu Watanabe, Motoko Iwashita, Masaru Ishii, Yoshihisa Kurachi, Atsushi Kawakami, Shigeru Kondo, Norihiro Okada. EMBO Rep 2006
121
4

Gap junctions composed of connexins 41.8 and 39.4 are essential for colour pattern formation in zebrafish.
Uwe Irion, Hans Georg Frohnhöfer, Jana Krauss, Tuǧba Çolak Champollion, Hans-Martin Maischein, Silke Geiger-Rudolph, Christian Weiler, Christiane Nüsslein-Volhard. Elife 2014
57
7


Small teleost fish provide new insights into human skeletal diseases.
P E Witten, M P Harris, A Huysseune, C Winkler. Methods Cell Biol 2017
47
8

Efficient multiplex biallelic zebrafish genome editing using a CRISPR nuclease system.
Li-En Jao, Susan R Wente, Wenbiao Chen. Proc Natl Acad Sci U S A 2013
766
4


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.