A citation-based method for searching scientific literature

Lin Tian, S Andrew Hires, Tianyi Mao, Daniel Huber, M Eugenia Chiappe, Sreekanth H Chalasani, Leopoldo Petreanu, Jasper Akerboom, Sean A McKinney, Eric R Schreiter, Cornelia I Bargmann, Vivek Jayaraman, Karel Svoboda, Loren L Looger. Nat Methods 2009
Times Cited: 1192







List of co-cited articles
592 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Ultrasensitive fluorescent proteins for imaging neuronal activity.
Tsai-Wen Chen, Trevor J Wardill, Yi Sun, Stefan R Pulver, Sabine L Renninger, Amy Baohan, Eric R Schreiter, Rex A Kerr, Michael B Orger, Vivek Jayaraman,[...]. Nature 2013
47


Optimization of a GCaMP calcium indicator for neural activity imaging.
Jasper Akerboom, Tsai-Wen Chen, Trevor J Wardill, Lin Tian, Jonathan S Marvin, Sevinç Mutlu, Nicole Carreras Calderón, Federico Esposti, Bart G Borghuis, Xiaonan Richard Sun,[...]. J Neurosci 2012
694
24

High-performance calcium sensors for imaging activity in neuronal populations and microcompartments.
Hod Dana, Yi Sun, Boaz Mohar, Brad K Hulse, Aaron M Kerlin, Jeremy P Hasseman, Getahun Tsegaye, Arthur Tsang, Allan Wong, Ronak Patel,[...]. Nat Methods 2019
167
23

Sensitive red protein calcium indicators for imaging neural activity.
Hod Dana, Boaz Mohar, Yi Sun, Sujatha Narayan, Andrew Gordus, Jeremy P Hasseman, Getahun Tsegaye, Graham T Holt, Amy Hu, Deepika Walpita,[...]. Elife 2016
341
21

An expanded palette of genetically encoded Ca²⁺ indicators.
Yongxin Zhao, Satoko Araki, Jiahui Wu, Takayuki Teramoto, Yu-Fen Chang, Masahiro Nakano, Ahmed S Abdelfattah, Manabi Fujiwara, Takeshi Ishihara, Takeharu Nagai,[...]. Science 2011
721
17

Fluorescent indicators for Ca2+ based on green fluorescent proteins and calmodulin.
A Miyawaki, J Llopis, R Heim, J M McCaffery, J A Adams, M Ikura, R Y Tsien. Nature 1997
14

Rational Engineering of XCaMPs, a Multicolor GECI Suite for In Vivo Imaging of Complex Brain Circuit Dynamics.
Masatoshi Inoue, Atsuya Takeuchi, Satoshi Manita, Shin-Ichiro Horigane, Masayuki Sakamoto, Ryosuke Kawakami, Kazushi Yamaguchi, Kouhei Otomo, Hiroyuki Yokoyama, Ryang Kim,[...]. Cell 2019
57
22

Ultrafast neuronal imaging of dopamine dynamics with designed genetically encoded sensors.
Tommaso Patriarchi, Jounhong Ryan Cho, Katharina Merten, Mark W Howe, Aaron Marley, Wei-Hong Xiong, Robert W Folk, Gerard Joey Broussard, Ruqiang Liang, Min Jee Jang,[...]. Science 2018
234
13

Genetically encoded indicators of neuronal activity.
Michael Z Lin, Mark J Schnitzer. Nat Neurosci 2016
255
11

A genetically encoded near-infrared fluorescent calcium ion indicator.
Yong Qian, Kiryl D Piatkevich, Benedict Mc Larney, Ahmed S Abdelfattah, Sohum Mehta, Mitchell H Murdock, Sven Gottschalk, Rosana S Molina, Wei Zhang, Yingche Chen,[...]. Nat Methods 2019
56
19

Imaging cellular signals in the heart in vivo: Cardiac expression of the high-signal Ca2+ indicator GCaMP2.
Yvonne N Tallini, Masamichi Ohkura, Bum-Rak Choi, Guangju Ji, Keiji Imoto, Robert Doran, Jane Lee, Patricia Plan, Jason Wilson, Hong-Bo Xin,[...]. Proc Natl Acad Sci U S A 2006
310
11

Genetically encoded calcium indicators for multi-color neural activity imaging and combination with optogenetics.
Jasper Akerboom, Nicole Carreras Calderón, Lin Tian, Sebastian Wabnig, Matthias Prigge, Johan Tolö, Andrew Gordus, Michael B Orger, Kristen E Severi, John J Macklin,[...]. Front Mol Neurosci 2013
380
10

Fast GCaMPs for improved tracking of neuronal activity.
Xiaonan R Sun, Aleksandra Badura, Diego A Pacheco, Laura A Lynch, Eve R Schneider, Matthew P Taylor, Ian B Hogue, Lynn W Enquist, Mala Murthy, Samuel S-H Wang. Nat Commun 2013
76
11

Imaging calcium in neurons.
Christine Grienberger, Arthur Konnerth. Neuron 2012
548
9

A Genetically Encoded Fluorescent Sensor Enables Rapid and Specific Detection of Dopamine in Flies, Fish, and Mice.
Fangmiao Sun, Jianzhi Zeng, Miao Jing, Jingheng Zhou, Jiesi Feng, Scott F Owen, Yichen Luo, Funing Li, Huan Wang, Takashi Yamaguchi,[...]. Cell 2018
189
9

An optimized fluorescent probe for visualizing glutamate neurotransmission.
Jonathan S Marvin, Bart G Borghuis, Lin Tian, Joseph Cichon, Mark T Harnett, Jasper Akerboom, Andrew Gordus, Sabine L Renninger, Tsai-Wen Chen, Cornelia I Bargmann,[...]. Nat Methods 2013
431
9

Circularly permuted green fluorescent proteins engineered to sense Ca2+.
T Nagai, A Sawano, E S Park, A Miyawaki. Proc Natl Acad Sci U S A 2001
672
9

Fiji: an open-source platform for biological-image analysis.
Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid,[...]. Nat Methods 2012
8

Neural circuits. Labeling of active neural circuits in vivo with designed calcium integrators.
Benjamin F Fosque, Yi Sun, Hod Dana, Chao-Tsung Yang, Tomoko Ohyama, Michael R Tadross, Ronak Patel, Marta Zlatic, Douglas S Kim, Misha B Ahrens,[...]. Science 2015
200
8


A genetically encoded fluorescent acetylcholine indicator for in vitro and in vivo studies.
Miao Jing, Peng Zhang, Guangfu Wang, Jiesi Feng, Lukas Mesik, Jianzhi Zeng, Huoqing Jiang, Shaohua Wang, Jess C Looby, Nick A Guagliardo,[...]. Nat Biotechnol 2018
107
8

A Genetically Encoded Fluorescent Sensor for Rapid and Specific In Vivo Detection of Norepinephrine.
Jiesi Feng, Changmei Zhang, Julieta E Lischinsky, Miao Jing, Jingheng Zhou, Huan Wang, Yajun Zhang, Ao Dong, Zhaofa Wu, Hao Wu,[...]. Neuron 2019
88
9

Miniaturized integration of a fluorescence microscope.
Kunal K Ghosh, Laurie D Burns, Eric D Cocker, Axel Nimmerjahn, Yaniv Ziv, Abbas El Gamal, Mark J Schnitzer. Nat Methods 2011
428
8

Circular permutation and receptor insertion within green fluorescent proteins.
G S Baird, D A Zacharias, R Y Tsien. Proc Natl Acad Sci U S A 1999
581
8


Imaging neuronal activity with genetically encoded calcium indicators.
Lin Tian, S Andrew Hires, Loren L Looger. Cold Spring Harb Protoc 2012
91
7

Rational design of a high-affinity, fast, red calcium indicator R-CaMP2.
Masatoshi Inoue, Atsuya Takeuchi, Shin-ichiro Horigane, Masamichi Ohkura, Keiko Gengyo-Ando, Hajime Fujii, Satoshi Kamijo, Sayaka Takemoto-Kimura, Masanobu Kano, Junichi Nakai,[...]. Nat Methods 2015
139
7

Ultrafast Two-Photon Imaging of a High-Gain Voltage Indicator in Awake Behaving Mice.
Vincent Villette, Mariya Chavarha, Ivan K Dimov, Jonathan Bradley, Lagnajeet Pradhan, Benjamin Mathieu, Stephen W Evans, Simon Chamberland, Dongqing Shi, Renzhi Yang,[...]. Cell 2019
53
13

A genetically encoded fluorescent sensor for in vivo imaging of GABA.
Jonathan S Marvin, Yoshiteru Shimoda, Vincent Magloire, Marco Leite, Takashi Kawashima, Thomas P Jensen, Ilya Kolb, Erika L Knott, Ondrej Novak, Kaspar Podgorski,[...]. Nat Methods 2019
74
9

The versatility and universality of calcium signalling.
M J Berridge, P Lipp, M D Bootman. Nat Rev Mol Cell Biol 2000
7

The development and application of optogenetics.
Lief Fenno, Ofer Yizhar, Karl Deisseroth. Annu Rev Neurosci 2011
908
7

Improved calcium sensor GCaMP-X overcomes the calcium channel perturbations induced by the calmodulin in GCaMP.
Yaxiong Yang, Nan Liu, Yuanyuan He, Yuxia Liu, Lin Ge, Linzhi Zou, Sen Song, Wei Xiong, Xiaodong Liu. Nat Commun 2018
57
10

A Cre-dependent GCaMP3 reporter mouse for neuronal imaging in vivo.
Hatim A Zariwala, Bart G Borghuis, Tycho M Hoogland, Linda Madisen, Lin Tian, Chris I De Zeeuw, Hongkui Zeng, Loren L Looger, Karel Svoboda, Tsai-Wen Chen. J Neurosci 2012
235
6

Genetically encoded Ca(2+) indicators: properties and evaluation.
Vadim Pérez Koldenkova, Takeharu Nagai. Biochim Biophys Acta 2013
102
6

Optogenetics in neural systems.
Ofer Yizhar, Lief E Fenno, Thomas J Davidson, Murtaza Mogri, Karl Deisseroth. Neuron 2011
946
6

Visualization of cortical, subcortical and deep brain neural circuit dynamics during naturalistic mammalian behavior with head-mounted microscopes and chronically implanted lenses.
Shanna L Resendez, Josh H Jennings, Randall L Ung, Vijay Mohan K Namboodiri, Zhe Charles Zhou, James M Otis, Hiroshi Nomura, Jenna A McHenry, Oksana Kosyk, Garret D Stuber. Nat Protoc 2016
109
6

Improved methods for marking active neuron populations.
Benjamien Moeyaert, Graham Holt, Rajtarun Madangopal, Alberto Perez-Alvarez, Brenna C Fearey, Nicholas F Trojanowski, Julia Ledderose, Timothy A Zolnik, Aniruddha Das, Davina Patel,[...]. Nat Commun 2018
34
14

Millisecond-timescale, genetically targeted optical control of neural activity.
Edward S Boyden, Feng Zhang, Ernst Bamberg, Georg Nagel, Karl Deisseroth. Nat Neurosci 2005
5

Single-fluorophore biosensors for sensitive and multiplexed detection of signalling activities.
Sohum Mehta, Yong Zhang, Richard H Roth, Jin-Fan Zhang, Albert Mo, Brian Tenner, Richard L Huganir, Jin Zhang. Nat Cell Biol 2018
42
11

Transgenic mice for intersectional targeting of neural sensors and effectors with high specificity and performance.
Linda Madisen, Aleena R Garner, Daisuke Shimaoka, Amy S Chuong, Nathan C Klapoetke, Lu Li, Alexander van der Bourg, Yusuke Niino, Ladan Egolf, Claudio Monetti,[...]. Neuron 2015
451
5

Bright and photostable chemigenetic indicators for extended in vivo voltage imaging.
Ahmed S Abdelfattah, Takashi Kawashima, Amrita Singh, Ondrej Novak, Hui Liu, Yichun Shuai, Yi-Chieh Huang, Luke Campagnola, Stephanie C Seeman, Jianing Yu,[...]. Science 2019
109
5

Stability, affinity, and chromatic variants of the glutamate sensor iGluSnFR.
Jonathan S Marvin, Benjamin Scholl, Daniel E Wilson, Kaspar Podgorski, Abbas Kazemipour, Johannes Alexander Müller, Susanne Schoch, Francisco José Urra Quiroz, Nelson Rebola, Huan Bao,[...]. Nat Methods 2018
95
5

A genetically encoded Ca2+ indicator based on circularly permutated sea anemone red fluorescent protein eqFP578.
Yi Shen, Hod Dana, Ahmed S Abdelfattah, Ronak Patel, Jamien Shea, Rosana S Molina, Bijal Rawal, Vladimir Rancic, Yu-Fen Chang, Lanshi Wu,[...]. BMC Biol 2018
38
13

Independent optical excitation of distinct neural populations.
Nathan C Klapoetke, Yasunobu Murata, Sung Soo Kim, Stefan R Pulver, Amanda Birdsey-Benson, Yong Ku Cho, Tania K Morimoto, Amy S Chuong, Eric J Carpenter, Zhijian Tian,[...]. Nat Methods 2014
832
5

Voltage imaging and optogenetics reveal behaviour-dependent changes in hippocampal dynamics.
Yoav Adam, Jeong J Kim, Shan Lou, Yongxin Zhao, Michael E Xie, Daan Brinks, Hao Wu, Mohammed A Mostajo-Radji, Simon Kheifets, Vicente Parot,[...]. Nature 2019
80
6

The structure of the nervous system of the nematode Caenorhabditis elegans.
J G White, E Southgate, J N Thomson, S Brenner. Philos Trans R Soc Lond B Biol Sci 1986
5

Genetically encoded bright Ca2+ probe applicable for dynamic Ca2+ imaging of dendritic spines.
Masamichi Ohkura, Masanori Matsuzaki, Haruo Kasai, Keiji Imoto, Junichi Nakai. Anal Chem 2005
86
5

Imaging intraorganellar Ca2+ at subcellular resolution using CEPIA.
Junji Suzuki, Kazunori Kanemaru, Kuniaki Ishii, Masamichi Ohkura, Yohei Okubo, Masamitsu Iino. Nat Commun 2014
191
5

Crystal structures of the GCaMP calcium sensor reveal the mechanism of fluorescence signal change and aid rational design.
Jasper Akerboom, Jonathan D Vélez Rivera, María M Rodríguez Guilbe, Elisa C Alfaro Malavé, Hector H Hernandez, Lin Tian, S Andrew Hires, Jonathan S Marvin, Loren L Looger, Eric R Schreiter. J Biol Chem 2009
154
5


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.